Clone Sequence Records
BS13992.3prime Sequence
567 bp (509 high quality bases) assembled on 2006-10-13
> BS13992.3prime
ATGGTCTAGAAAGCTTTTAGTGGTGTCCCTGGGCTTCGGCCTCCAGCTGC
TCCTTGGACTTGTAGCCGACCTGCTCCTCGGGAGTGTGGGGCCAGAAGGT
AGGCTTGTTGAGGGGATCGAGTGCGCTATCGGGGAATGCGTCGCGGTAGT
CCTCCATGGTCATCTGGTCGTAGGGCAGCAGAGACTTGAGATGGGCGATC
TCCTTTTGGTAGTTCTGAATGCGCTGCTCCGAGGCCTTCTTGTAGGCATC
GATTTCGCTCTGCGACGCCTTGATCTCGGCATCCACCTGGGACGACACCT
TGTCCTGGGGATAGGGCACCTTCAGGGCTTCGTACTGCTTCTGGAAGCTA
TCGACGAGTCCGGCCACTGGCACAAGCTTCTTGTAGTTGGCCCAATCGAT
CTGGGGTGGGCACTCGGGATTGGCCAGCACGGCGCGCACATAGATGTCCG
ACTTGGTCTTGAAGGCGCCGAAGCTGCTCTTCTGGTTGGCGGGCACGCGC
TCGGCGAGAGCGGACCAGTTGATCGAGGATTGGGCGATACGGCGGGCGGC
CTTGTCAACTGATAACT
BS13992.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6030-PB | 537 | ATPsyn-d-RB | 3..537 | 551..17 | 2650 | 99.8 | Minus |
CG6030-PA | 537 | ATPsyn-d-RA | 3..537 | 551..17 | 2650 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:07:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-d-RC | 950 | CG6030-RC | 90..625 | 551..16 | 2665 | 99.8 | Minus |
ATPsyn-d-RA | 734 | CG6030-RA | 90..625 | 551..16 | 2665 | 99.8 | Minus |
ATPsyn-d-RB | 694 | CG6030-RB | 37..572 | 551..16 | 2665 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:07:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19095411..19095946 | 551..16 | 2665 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:07:26 has no hits.
BS13992.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:33 Download gff for
BS13992.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6030-PA | 1..537 | 17..552 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:58 Download gff for
BS13992.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-d-RB | 46..585 | 16..556 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:42 Download gff for
BS13992.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-d-RB | 33..572 | 16..556 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:42 Download gff for
BS13992.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19095407..19095946 | 16..556 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:58 Download gff for
BS13992.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14921129..14921668 | 16..556 | 99 | | Minus |
BS13992.5prime Sequence
541 bp (490 high quality bases) assembled on 2006-10-13
> BS13992.5prime
GAAGTTATCAGTCGACATGGCCGCCCGCCGTATCGCCCAATCCTCGATCA
ACTGGTCCGCTCTCGCCGAGCGCGTGCCCGCCAACCAGAAGAGCAGCTTC
GGCGCCTTCAAGACCAAGTCGGACATCTATGTGCGCGCCGTGCTGGCCAA
TCCCGAGTGCCCACCCCAGATCGATTGGGCCAACTACAAGAAGCTTGTGC
CAGTGGCCGGACTCGTCGATAGCTTCCAGAAGCAGTACGAAGCCCTGAAG
GTGCCCTATCCCCAGGACAAGGTGTCGTCCCAGGTGGATGCCGAGATCAA
GGCGTCGCAGAGCGAAATCGATGCCTACAAGAAGGCCTCGGAGCAGCGCA
TTCAGAACTACCAAAAGGAGATCGCCCATCTCAAGTCTCTGCTGCCCTAC
GACCAGATGACCATGGAGGACTACCGCGACGCATTCCCCGATAGCGCACT
CGATCCCCTCAACAAGCCTACCTTCTGGCCCCACACTCCCGAGGAGCAGG
TCGGCTACAAGTCCCAGGAGCAGCTGGAGGCCGAAGCCCAG
BS13992.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6030-PB | 537 | ATPsyn-d-RB | 1..525 | 17..541 | 2575 | 99.6 | Plus |
CG6030-PA | 537 | ATPsyn-d-RA | 1..525 | 17..541 | 2575 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:30:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-d-RC | 950 | CG6030-RC | 88..612 | 17..541 | 2595 | 99.6 | Plus |
ATPsyn-d-RA | 734 | CG6030-RA | 88..612 | 17..541 | 2595 | 99.6 | Plus |
ATPsyn-d-RB | 694 | CG6030-RB | 35..559 | 17..541 | 2595 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:30:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19095409..19095933 | 17..541 | 2595 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:30:47 has no hits.
BS13992.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:34 Download gff for
BS13992.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6030-PA | 1..525 | 17..541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:42:24 Download gff for
BS13992.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-d-RB | 32..572 | 2..541 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:59 Download gff for
BS13992.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-d-RB | 19..559 | 2..541 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:59 Download gff for
BS13992.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19095397..19095933 | 6..541 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:24 Download gff for
BS13992.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14921119..14921655 | 6..541 | 98 | | Plus |
BS13992.complete Sequence
569 bp assembled on 2006-11-01
GenBank Submission: FJ637576
> BS13992.complete
GAAGTTATCAGTCGACATGGCCGCCCGCCGTATCGCCCAATCCTCGATCA
ACTGGTCCGCTCTCGCCGAGCGCGTGCCCGCCAACCAGAAGAGCAGCTTC
GGCGCCTTCAAGACCAAGTCGGACATCTATGTGCGCGCCGTGCTGGCCAA
TCCCGAGTGCCCACCCCAGATCGATTGGGCCAACTACAAGAAGCTTGTGC
CAGTGGCCGGACTCGTCGATAGCTTCCAGAAGCAGTACGAAGCCCTGAAG
GTGCCCTATCCCCAGGACAAGGTGTCGTCCCAGGTGGATGCCGAGATCAA
GGCGTCGCAGAGCGAAATCGATGCCTACAAGAAGGCCTCGGAGCAGCGCA
TTCAGAACTACCAAAAGGAGATCGCCCATCTCAAGTCTCTGCTGCCCTAC
GACCAGATGACCATGGAGGACTACCGCGACGCATTCCCCGATAGCGCACT
CGATCCCCTCAACAAGCCTACCTTCTGGCCCCACACTCCCGAGGAGCAGG
TCGGCTACAAGTCCAAGGAGCAGCTGGAGGCCGAAGCCCAGGGACACCAC
TAAAAGCTTTCTAGACCAT
BS13992.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:05:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-d-RC | 537 | CG6030-PC | 1..537 | 17..553 | 2670 | 99.8 | Plus |
ATPsyn-d-RA | 537 | CG6030-PA | 1..537 | 17..553 | 2670 | 99.8 | Plus |
ATPsyn-d-RB | 537 | CG6030-PB | 1..537 | 17..553 | 2670 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-d-RC | 950 | CG6030-RC | 88..625 | 17..554 | 2675 | 99.8 | Plus |
ATPsyn-d-RA | 734 | CG6030-RA | 88..625 | 17..554 | 2675 | 99.8 | Plus |
ATPsyn-d-RB | 694 | CG6030-RB | 35..572 | 17..554 | 2675 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19095409..19095946 | 17..554 | 2675 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:05:27 has no hits.
BS13992.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:25 Download gff for
BS13992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-d-RA | 1..537 | 17..553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:45 Download gff for
BS13992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-d-RA | 66..615 | 6..554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:44:40 Download gff for
BS13992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-d-RB | 48..582 | 17..551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:25 Download gff for
BS13992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-d-RA | 66..615 | 6..554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:18:15 Download gff for
BS13992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-d-RB | 35..569 | 17..551 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:18:15 Download gff for
BS13992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19095409..19095943 | 17..551 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:44:40 Download gff for
BS13992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14921131..14921665 | 17..551 | 99 | | Plus |
BS13992.pep Sequence
Translation from 16 to 552
> BS13992.pep
MAARRIAQSSINWSALAERVPANQKSSFGAFKTKSDIYVRAVLANPECPP
QIDWANYKKLVPVAGLVDSFQKQYEALKVPYPQDKVSSQVDAEIKASQSE
IDAYKKASEQRIQNYQKEIAHLKSLLPYDQMTMEDYRDAFPDSALDPLNK
PTFWPHTPEEQVGYKSKEQLEAEAQGHH*
BS13992.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-d-PC | 178 | CG6030-PC | 1..178 | 1..178 | 929 | 100 | Plus |
ATPsyn-d-PA | 178 | CG6030-PA | 1..178 | 1..178 | 929 | 100 | Plus |
ATPsyn-d-PB | 178 | CG6030-PB | 1..178 | 1..178 | 929 | 100 | Plus |
CG7813-PA | 734 | CG7813-PA | 19..200 | 4..178 | 241 | 33.7 | Plus |