Clone Sequence Records
BS13993.3prime Sequence
626 bp (554 high quality bases) assembled on 2006-10-13
> BS13993.3prime
ATGGTCTAGAAAGCTTCTACTGTTCCTTGGCCAGGCGGCGCAGGGCACGT
TTCCGGGTGCCCAGGATGTTCTTCATAACGATGTTGCGTGCGAACTGTTC
GCCGAACACCGCCTCCGTGAAGTGGATGACCAGCTGGAGTAGAGCATGCG
GCAGATAGCCCGCCGTCTGGGTGGCAATGCCCAGGGTGGACAGCGCCGAG
CGGACATACGTTTCCGGCGAGGGAGCAAACACGCTAGCCTTTCGGATCTT
AGACATATTTGTGGCCACAAAGCCCGGCTGGACGCTCTGGATGAGGATGC
CGTGCTCCTTGTACTCCGTCTGCAGGTCATCACTGAATTTGTTCACAAAG
GCCTTGGTGGAACTGTACACGCTCAGCAGCGGATTAGGAATGACTCCGGC
GGTGGACGATACATTTATGATCACACCACGTCGCTGGCTAATCATGCCGG
GTAGAAAAAGTGCGGTCATGTGCGTCACCGAGTGGATATTGGCAGCCACA
ATGTTGCGCAGGAATGGGGGATCGGCTTTGTAGCAGTCCAGAAAGTACTC
GGGATGGCCGTAGCTGATGCCCACGTTGTTGACCAGCACTCCGACATTGA
GGCCCGTGGTCTTTTCGCGGATCTTA
BS13993.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1444-PA | 966 | CG1444-RA | 357..966 | 626..17 | 3025 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:30:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1444-RA | 1705 | CG1444-RA | 798..1408 | 626..16 | 3040 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:30:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7911250..7911588 | 354..16 | 1695 | 100 | Minus |
X | 23542271 | X | 7910920..7911194 | 626..352 | 1360 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:30:50 has no hits.
BS13993.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:34 Download gff for
BS13993.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1444-PA | 358..966 | 17..625 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:14:23 Download gff for
BS13993.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1444-RA | 799..1410 | 11..625 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:38 Download gff for
BS13993.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1444-RA | 799..1410 | 11..625 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:38 Download gff for
BS13993.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7910921..7911193 | 353..625 | 99 | -> | Minus |
X | 7911252..7911590 | 11..352 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:14:23 Download gff for
BS13993.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7804954..7805226 | 353..625 | 99 | -> | Minus |
arm_X | 7805285..7805623 | 11..352 | 99 | | Minus |
BS13993.5prime Sequence
680 bp (547 high quality bases) assembled on 2006-10-13
> BS13993.5prime
GAAGTTATCAGTCGACATGGAGGAGAACAACTCGCAAGTGCTGAGCCTGC
TGGGCGGTCTGGCCATCGGAATCGTGGGCTTCCAGGTCTTCCGGAAGGTC
CTGCCCTGGATTTACGCCAATGTTGTTGGCCCCAAGGTCTTTGGCTCCTC
GGTGGATCTCTCCAAAATGGGCGAGTGGGCAGTTGTCACCGGGTCGACCG
ATGGAATTGGCAAGGCCTACGCCAAGGAGTTGGCTCGCAGGGGCTTGAAA
CTGGTGCTGATTAGTAGATCCCTGGAGAAACTGAATGTGGTGGCCAAGGA
GATAGGCGATAAATACGGTGTGGAGGTGCGTGTGATCGATGTGGACTTCA
CCGGCGGTGACGAGATCTACGATAAGATCCGCGAAAAGACCACTGGCCTC
AATGTCGGAGTGCTGGTCAACAACGTGGGCATCAGCTACGGCCATCCCGA
GTACTTTCTGGACTGCTACAAAGCCGATCCCCCATTCCTGCGCAACATTG
TGGCTGCCAATATCCACTCGGTGACGCACATGACCGCACTTTTTCTACCC
GGCATGATTAGCCAGCGACGTGGTGTGATCATAAATGTATCGTCCACCGC
CGGAGTCATTTCTAATCCGCTGCTGAGCGTGTACAGTTCCACCAAGGCCT
TTTGTGAACAAATTTCATTGATGACCTGCA
BS13993.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1444-PA | 966 | CG1444-RA | 1..636 | 17..652 | 3155 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:16:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1444-RA | 1705 | CG1444-RA | 441..1103 | 16..680 | 3245 | 99.4 | Plus |
CG31810-RA | 1138 | CG31810-RA | 208..290 | 176..258 | 190 | 83.3 | Plus |
CG31809-RC | 1186 | CG31809-RC | 257..339 | 176..258 | 190 | 83.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:16:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7910851..7911194 | 304..647 | 1705 | 99.7 | Plus |
X | 23542271 | X | 7909371..7909537 | 16..182 | 835 | 100 | Plus |
X | 23542271 | X | 7910707..7910785 | 228..306 | 395 | 100 | Plus |
X | 23542271 | X | 7909875..7909924 | 180..229 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:16:04 has no hits.
BS13993.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:35 Download gff for
BS13993.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1444-PA | 1..661 | 17..679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:35:59 Download gff for
BS13993.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1444-RA | 433..1102 | 7..679 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:06 Download gff for
BS13993.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1444-RA | 433..1102 | 7..679 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:06 Download gff for
BS13993.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7909363..7909537 | 7..182 | 97 | -> | Plus |
X | 7909878..7909924 | 183..229 | 100 | -> | Plus |
X | 7910709..7910784 | 230..305 | 100 | -> | Plus |
X | 7910853..7911193 | 306..646 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:59 Download gff for
BS13993.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7803396..7803570 | 7..182 | 97 | -> | Plus |
arm_X | 7803911..7803957 | 183..229 | 100 | -> | Plus |
arm_X | 7804742..7804817 | 230..305 | 100 | -> | Plus |
arm_X | 7804886..7805226 | 306..646 | 99 | -> | Plus |
BS13993.complete Sequence
998 bp assembled on 2006-11-01
GenBank Submission: FJ637577
> BS13993.complete
GAAGTTATCAGTCGACATGGAGGAGAACAACTCGCAAGTGCTGAGCCTGC
TGGGCGGTCTGGCCATCGGAATCGTGGGCTTCCAGGTCTTCCGGAAGGTC
CTGCCCTGGATTTACGCCAATGTTGTTGGCCCCAAGGTCTTTGGCTCCTC
GGTGGATCTCTCCAAAATGGGCGAGTGGGCAGTTGTCACCGGGTCGACCG
ATGGAATTGGCAAGGCCTACGCCAAGGAGTTGGCTCGCAGGGGCTTGAAA
CTGGTGCTGATTAGTAGATCCCTGGAGAAACTGAATGTGGTGGCCAAGGA
GATAGGCGATAAATACGGTGTGGAGGTGCGTGTGATCGATGTGGACTTCA
CCGGCGGTGACGAGATCTACGATAAGATCCGCGAAAAGACCACTGGCCTC
AATGTCGGAGTGCTGGTCAACAACGTGGGCATCAGCTACGGCCATCCCGA
GTACTTTCTGGACTGCTACAAAGCCGATCCCCCATTCCTGCGCAACATTG
TGGCTGCCAATATCCACTCGGTGACGCACATGACCGCACTTTTTCTACCC
GGCATGATTAGCCAGCGACGTGGTGTGATCATAAATGTATCGTCCACCGC
CGGAGTCATTCCTAATCCGCTGCTGAGCGTGTACAGTTCCACCAAGGCCT
TTGTGAACAAATTCAGTGATGACCTGCAGACGGAGTACAAGGAGCACGGC
ATCCTCATCCAGAGCGTCCAGCCGGGCTTTGTGGCCACAAATATGTCTAA
GATCCGAAAGGCTAGCGTGTTTGCTCCCTCGCCGGAAACGTATGTCCGCT
CGGCGCTGTCCACCCTGGGCATTGCCACCCAGACGGCGGGCTATCTGCCG
CATGCTCTACTCCAGCTGGTCATCCACTTCACGGAGGCGGTGTTCGGCGA
ACAGTTCGCACGCAACATCGTTATGAAGAACATCCTGGGCACCCGGAAAC
GTGCCCTGCGCCGCCTGGCCAAGGAACAGTAGAAGCTTTCTAGACCAT
BS13993.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:50:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1444-RA | 966 | CG1444-PA | 1..966 | 17..982 | 4830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:50:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1444-RA | 1705 | CG1444-RA | 441..1408 | 16..983 | 4840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:50:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7910851..7911194 | 304..647 | 1720 | 100 | Plus |
X | 23542271 | X | 7911250..7911588 | 645..983 | 1695 | 100 | Plus |
X | 23542271 | X | 7909371..7909537 | 16..182 | 835 | 100 | Plus |
X | 23542271 | X | 7910707..7910785 | 228..306 | 395 | 100 | Plus |
X | 23542271 | X | 7909875..7909924 | 180..229 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:50:38 has no hits.
BS13993.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:28 Download gff for
BS13993.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1444-RA | 1..966 | 17..982 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:48 Download gff for
BS13993.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1444-RA | 472..1449 | 7..988 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:45 Download gff for
BS13993.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1444-RA | 442..1407 | 17..982 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:28 Download gff for
BS13993.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1444-RA | 472..1449 | 7..988 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:22 Download gff for
BS13993.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1444-RA | 442..1407 | 17..982 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:22 Download gff for
BS13993.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7909372..7909537 | 17..182 | 100 | -> | Plus |
X | 7909878..7909924 | 183..229 | 100 | -> | Plus |
X | 7910709..7910784 | 230..305 | 100 | -> | Plus |
X | 7910853..7911193 | 306..646 | 100 | -> | Plus |
X | 7911252..7911587 | 647..982 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:45 Download gff for
BS13993.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7803405..7803570 | 17..182 | 100 | -> | Plus |
arm_X | 7803911..7803957 | 183..229 | 100 | -> | Plus |
arm_X | 7804742..7804817 | 230..305 | 100 | -> | Plus |
arm_X | 7804886..7805226 | 306..646 | 100 | -> | Plus |
arm_X | 7805285..7805620 | 647..982 | 100 | | Plus |
BS13993.pep Sequence
Translation from 16 to 981
> BS13993.pep
MEENNSQVLSLLGGLAIGIVGFQVFRKVLPWIYANVVGPKVFGSSVDLSK
MGEWAVVTGSTDGIGKAYAKELARRGLKLVLISRSLEKLNVVAKEIGDKY
GVEVRVIDVDFTGGDEIYDKIREKTTGLNVGVLVNNVGISYGHPEYFLDC
YKADPPFLRNIVAANIHSVTHMTALFLPGMISQRRGVIINVSSTAGVIPN
PLLSVYSSTKAFVNKFSDDLQTEYKEHGILIQSVQPGFVATNMSKIRKAS
VFAPSPETYVRSALSTLGIATQTAGYLPHALLQLVIHFTEAVFGEQFARN
IVMKNILGTRKRALRRLAKEQ*
BS13993.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1444-PA | 321 | CG1444-PA | 1..321 | 1..321 | 1617 | 100 | Plus |
CG13284-PE | 325 | CG13284-PE | 9..286 | 6..281 | 523 | 42 | Plus |
CG13284-PA | 325 | CG13284-PA | 9..286 | 6..281 | 523 | 42 | Plus |
CG13284-PC | 338 | CG13284-PC | 22..299 | 6..281 | 523 | 42 | Plus |
CG13284-PD | 339 | CG13284-PD | 23..300 | 6..281 | 523 | 42 | Plus |