Clone BS13993 Report

Search the DGRC for BS13993

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:139
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptCG1444-RA
Protein status:BS13993.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13993.3prime Sequence

626 bp (554 high quality bases) assembled on 2006-10-13

> BS13993.3prime
ATGGTCTAGAAAGCTTCTACTGTTCCTTGGCCAGGCGGCGCAGGGCACGT
TTCCGGGTGCCCAGGATGTTCTTCATAACGATGTTGCGTGCGAACTGTTC
GCCGAACACCGCCTCCGTGAAGTGGATGACCAGCTGGAGTAGAGCATGCG
GCAGATAGCCCGCCGTCTGGGTGGCAATGCCCAGGGTGGACAGCGCCGAG
CGGACATACGTTTCCGGCGAGGGAGCAAACACGCTAGCCTTTCGGATCTT
AGACATATTTGTGGCCACAAAGCCCGGCTGGACGCTCTGGATGAGGATGC
CGTGCTCCTTGTACTCCGTCTGCAGGTCATCACTGAATTTGTTCACAAAG
GCCTTGGTGGAACTGTACACGCTCAGCAGCGGATTAGGAATGACTCCGGC
GGTGGACGATACATTTATGATCACACCACGTCGCTGGCTAATCATGCCGG
GTAGAAAAAGTGCGGTCATGTGCGTCACCGAGTGGATATTGGCAGCCACA
ATGTTGCGCAGGAATGGGGGATCGGCTTTGTAGCAGTCCAGAAAGTACTC
GGGATGGCCGTAGCTGATGCCCACGTTGTTGACCAGCACTCCGACATTGA
GGCCCGTGGTCTTTTCGCGGATCTTA

BS13993.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG1444-PA 966 CG1444-RA 357..966 626..17 3025 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:30:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG1444-RA 1705 CG1444-RA 798..1408 626..16 3040 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:30:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7911250..7911588 354..16 1695 100 Minus
X 23542271 X 7910920..7911194 626..352 1360 99.6 Minus
Blast to na_te.dros performed on 2015-02-10 16:30:50 has no hits.

BS13993.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:34 Download gff for BS13993.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1444-PA 358..966 17..625 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:14:23 Download gff for BS13993.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1444-RA 799..1410 11..625 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:38 Download gff for BS13993.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1444-RA 799..1410 11..625 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:38 Download gff for BS13993.3prime
Subject Subject Range Query Range Percent Splice Strand
X 7910921..7911193 353..625 99 -> Minus
X 7911252..7911590 11..352 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:14:23 Download gff for BS13993.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7804954..7805226 353..625 99 -> Minus
arm_X 7805285..7805623 11..352 99   Minus

BS13993.5prime Sequence

680 bp (547 high quality bases) assembled on 2006-10-13

> BS13993.5prime
GAAGTTATCAGTCGACATGGAGGAGAACAACTCGCAAGTGCTGAGCCTGC
TGGGCGGTCTGGCCATCGGAATCGTGGGCTTCCAGGTCTTCCGGAAGGTC
CTGCCCTGGATTTACGCCAATGTTGTTGGCCCCAAGGTCTTTGGCTCCTC
GGTGGATCTCTCCAAAATGGGCGAGTGGGCAGTTGTCACCGGGTCGACCG
ATGGAATTGGCAAGGCCTACGCCAAGGAGTTGGCTCGCAGGGGCTTGAAA
CTGGTGCTGATTAGTAGATCCCTGGAGAAACTGAATGTGGTGGCCAAGGA
GATAGGCGATAAATACGGTGTGGAGGTGCGTGTGATCGATGTGGACTTCA
CCGGCGGTGACGAGATCTACGATAAGATCCGCGAAAAGACCACTGGCCTC
AATGTCGGAGTGCTGGTCAACAACGTGGGCATCAGCTACGGCCATCCCGA
GTACTTTCTGGACTGCTACAAAGCCGATCCCCCATTCCTGCGCAACATTG
TGGCTGCCAATATCCACTCGGTGACGCACATGACCGCACTTTTTCTACCC
GGCATGATTAGCCAGCGACGTGGTGTGATCATAAATGTATCGTCCACCGC
CGGAGTCATTTCTAATCCGCTGCTGAGCGTGTACAGTTCCACCAAGGCCT
TTTGTGAACAAATTTCATTGATGACCTGCA

BS13993.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG1444-PA 966 CG1444-RA 1..636 17..652 3155 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:16:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG1444-RA 1705 CG1444-RA 441..1103 16..680 3245 99.4 Plus
CG31810-RA 1138 CG31810-RA 208..290 176..258 190 83.3 Plus
CG31809-RC 1186 CG31809-RC 257..339 176..258 190 83.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:16:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7910851..7911194 304..647 1705 99.7 Plus
X 23542271 X 7909371..7909537 16..182 835 100 Plus
X 23542271 X 7910707..7910785 228..306 395 100 Plus
X 23542271 X 7909875..7909924 180..229 250 100 Plus
Blast to na_te.dros performed on 2015-01-31 10:16:04 has no hits.

BS13993.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:35 Download gff for BS13993.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1444-PA 1..661 17..679 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:35:59 Download gff for BS13993.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1444-RA 433..1102 7..679 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:06 Download gff for BS13993.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1444-RA 433..1102 7..679 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:06 Download gff for BS13993.5prime
Subject Subject Range Query Range Percent Splice Strand
X 7909363..7909537 7..182 97 -> Plus
X 7909878..7909924 183..229 100 -> Plus
X 7910709..7910784 230..305 100 -> Plus
X 7910853..7911193 306..646 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:59 Download gff for BS13993.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7803396..7803570 7..182 97 -> Plus
arm_X 7803911..7803957 183..229 100 -> Plus
arm_X 7804742..7804817 230..305 100 -> Plus
arm_X 7804886..7805226 306..646 99 -> Plus

BS13993.complete Sequence

998 bp assembled on 2006-11-01

GenBank Submission: FJ637577

> BS13993.complete
GAAGTTATCAGTCGACATGGAGGAGAACAACTCGCAAGTGCTGAGCCTGC
TGGGCGGTCTGGCCATCGGAATCGTGGGCTTCCAGGTCTTCCGGAAGGTC
CTGCCCTGGATTTACGCCAATGTTGTTGGCCCCAAGGTCTTTGGCTCCTC
GGTGGATCTCTCCAAAATGGGCGAGTGGGCAGTTGTCACCGGGTCGACCG
ATGGAATTGGCAAGGCCTACGCCAAGGAGTTGGCTCGCAGGGGCTTGAAA
CTGGTGCTGATTAGTAGATCCCTGGAGAAACTGAATGTGGTGGCCAAGGA
GATAGGCGATAAATACGGTGTGGAGGTGCGTGTGATCGATGTGGACTTCA
CCGGCGGTGACGAGATCTACGATAAGATCCGCGAAAAGACCACTGGCCTC
AATGTCGGAGTGCTGGTCAACAACGTGGGCATCAGCTACGGCCATCCCGA
GTACTTTCTGGACTGCTACAAAGCCGATCCCCCATTCCTGCGCAACATTG
TGGCTGCCAATATCCACTCGGTGACGCACATGACCGCACTTTTTCTACCC
GGCATGATTAGCCAGCGACGTGGTGTGATCATAAATGTATCGTCCACCGC
CGGAGTCATTCCTAATCCGCTGCTGAGCGTGTACAGTTCCACCAAGGCCT
TTGTGAACAAATTCAGTGATGACCTGCAGACGGAGTACAAGGAGCACGGC
ATCCTCATCCAGAGCGTCCAGCCGGGCTTTGTGGCCACAAATATGTCTAA
GATCCGAAAGGCTAGCGTGTTTGCTCCCTCGCCGGAAACGTATGTCCGCT
CGGCGCTGTCCACCCTGGGCATTGCCACCCAGACGGCGGGCTATCTGCCG
CATGCTCTACTCCAGCTGGTCATCCACTTCACGGAGGCGGTGTTCGGCGA
ACAGTTCGCACGCAACATCGTTATGAAGAACATCCTGGGCACCCGGAAAC
GTGCCCTGCGCCGCCTGGCCAAGGAACAGTAGAAGCTTTCTAGACCAT

BS13993.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:50:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG1444-RA 966 CG1444-PA 1..966 17..982 4830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1444-RA 1705 CG1444-RA 441..1408 16..983 4840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:50:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7910851..7911194 304..647 1720 100 Plus
X 23542271 X 7911250..7911588 645..983 1695 100 Plus
X 23542271 X 7909371..7909537 16..182 835 100 Plus
X 23542271 X 7910707..7910785 228..306 395 100 Plus
X 23542271 X 7909875..7909924 180..229 250 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:50:38 has no hits.

BS13993.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:28 Download gff for BS13993.complete
Subject Subject Range Query Range Percent Splice Strand
CG1444-RA 1..966 17..982 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:48 Download gff for BS13993.complete
Subject Subject Range Query Range Percent Splice Strand
CG1444-RA 472..1449 7..988 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:45 Download gff for BS13993.complete
Subject Subject Range Query Range Percent Splice Strand
CG1444-RA 442..1407 17..982 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:28 Download gff for BS13993.complete
Subject Subject Range Query Range Percent Splice Strand
CG1444-RA 472..1449 7..988 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:22 Download gff for BS13993.complete
Subject Subject Range Query Range Percent Splice Strand
CG1444-RA 442..1407 17..982 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:22 Download gff for BS13993.complete
Subject Subject Range Query Range Percent Splice Strand
X 7909372..7909537 17..182 100 -> Plus
X 7909878..7909924 183..229 100 -> Plus
X 7910709..7910784 230..305 100 -> Plus
X 7910853..7911193 306..646 100 -> Plus
X 7911252..7911587 647..982 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:45 Download gff for BS13993.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7803405..7803570 17..182 100 -> Plus
arm_X 7803911..7803957 183..229 100 -> Plus
arm_X 7804742..7804817 230..305 100 -> Plus
arm_X 7804886..7805226 306..646 100 -> Plus
arm_X 7805285..7805620 647..982 100   Plus

BS13993.pep Sequence

Translation from 16 to 981

> BS13993.pep
MEENNSQVLSLLGGLAIGIVGFQVFRKVLPWIYANVVGPKVFGSSVDLSK
MGEWAVVTGSTDGIGKAYAKELARRGLKLVLISRSLEKLNVVAKEIGDKY
GVEVRVIDVDFTGGDEIYDKIREKTTGLNVGVLVNNVGISYGHPEYFLDC
YKADPPFLRNIVAANIHSVTHMTALFLPGMISQRRGVIINVSSTAGVIPN
PLLSVYSSTKAFVNKFSDDLQTEYKEHGILIQSVQPGFVATNMSKIRKAS
VFAPSPETYVRSALSTLGIATQTAGYLPHALLQLVIHFTEAVFGEQFARN
IVMKNILGTRKRALRRLAKEQ*

BS13993.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG1444-PA 321 CG1444-PA 1..321 1..321 1617 100 Plus
CG13284-PE 325 CG13284-PE 9..286 6..281 523 42 Plus
CG13284-PA 325 CG13284-PA 9..286 6..281 523 42 Plus
CG13284-PC 338 CG13284-PC 22..299 6..281 523 42 Plus
CG13284-PD 339 CG13284-PD 23..300 6..281 523 42 Plus