Clone Sequence Records
BS13994.3prime Sequence
486 bp (486 high quality bases) assembled on 2006-10-13
> BS13994.3prime
ATGGTCTAGAAAGCTTTCAGAAGGCGGCCGAGGCGATGACCTGCAGGGCC
ATGTAGACGGTGGCGCCCAAGGCCACGAAGAAGGCGAGGGCACGGGAAGG
CTGGGGCACCACGACCACGGCGTAGACCAGTGTGTGGACGATGCGGGCGA
TGCCCACGGCGCGGAACAGGTTGATGGCCAGAAAGGCGGCCGGATCAGTC
AGGACGTAGAGCAGACCGATGGCGAAGAAGGGCAGGATGTTCTCCAGGTC
GTTGCGGTGGGCACGGCGCACACGCTCCACGTTCGGATCGTCGAACTTGA
CCTTCAGCTTGGGGGACATCAGGTCCTCGGGGTTGGCGAAGGTGGCCGTA
AAGAAGCGCATGAGACCCGTGTAAATACCAGCGGCGAAGATCTTGAGTAT
CAATATAGCCGACCATCCCAGGTAGCATCGGAACACCTGGTTCTCCAGCG
ACATGAGTTCGGGGTTAAGCATGTCGACTGATAACT
BS13994.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1742-PB | 456 | Mgstl-RB | 1..456 | 472..17 | 2280 | 100 | Minus |
CG1742-PA | 459 | Mgstl-RA | 133..459 | 343..17 | 1635 | 100 | Minus |
CG32510-PA | 387 | CG32510-RA | 7..333 | 17..343 | 1635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:07:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mgstl-RC | 951 | CG1742-RC | 395..850 | 472..17 | 2280 | 100 | Minus |
Mgstl-RB | 591 | CG1742-RB | 35..490 | 472..17 | 2280 | 100 | Minus |
Mgstl-RA | 660 | CG1742-RA | 233..559 | 343..17 | 1635 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:07:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21043680..21044006 | 343..17 | 1635 | 100 | Minus |
2L | 23513712 | 2L | 22226345..22226671 | 343..17 | 1530 | 97.9 | Minus |
X | 23542271 | X | 21042519..21042647 | 472..344 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:07:39 has no hits.
BS13994.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:35 Download gff for
BS13994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1742-PB | 1..456 | 17..472 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:00 Download gff for
BS13994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mgstl-RB | 30..492 | 13..477 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:44 Download gff for
BS13994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mgstl-RB | 30..492 | 13..477 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:44 Download gff for
BS13994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21042514..21042647 | 344..477 | 98 | -> | Minus |
X | 21043680..21044008 | 13..343 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:00 Download gff for
BS13994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20913541..20913674 | 344..477 | 98 | -> | Minus |
arm_X | 20914707..20915035 | 13..343 | 99 | | Minus |
BS13994.5prime Sequence
486 bp (486 high quality bases) assembled on 2006-10-13
> BS13994.5prime
GAAGTTATCAGTCGACATGCTTAACCCCGAACTCATGTCGCTGGAGAACC
AGGTGTTCCGATGCTACCTGGGATGGTCGGCTATATTGATACTCAAGATC
TTCGCCGCTGGTATTTACACGGGTCTCATGCGCTTCTTTACGGCCACCTT
CGCCAACCCCGAGGACCTGATGTCCCCCAAGCTGAAGGTCAAGTTCGACG
ATCCGAACGTGGAGCGTGTGCGCCGTGCCCACCGCAACGACCTGGAGAAC
ATCCTGCCCTTCTTCGCCATCGGTCTGCTCTACGTCCTGACTGATCCGGC
CGCCTTTCTGGCCATCAACCTGTTCCGCGCCGTGGGCATCGCCCGCATCG
TCCACACACTGGTCTACGCCGTGGTCGTGGTGCCCCAGCCTTCCCGTGCC
CTCGCCTTCTTCGTGGCCTTGGGCGCCACCGTCTACATGGCCCTGCAGGT
CATCGCCTCGGCCGCCTTCTGAAAGCTTTCTAGACC
BS13994.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1742-PB | 456 | Mgstl-RB | 1..456 | 17..472 | 2280 | 100 | Plus |
CG1742-PA | 459 | Mgstl-RA | 133..459 | 146..472 | 1635 | 100 | Plus |
CG32510-PA | 387 | CG32510-RA | 7..333 | 472..146 | 1635 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:11:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mgstl-RC | 951 | CG1742-RC | 395..850 | 17..472 | 2280 | 100 | Plus |
Mgstl-RB | 591 | CG1742-RB | 35..490 | 17..472 | 2280 | 100 | Plus |
Mgstl-RA | 660 | CG1742-RA | 233..559 | 146..472 | 1635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:11:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21043680..21044006 | 146..472 | 1635 | 100 | Plus |
2L | 23513712 | 2L | 22226345..22226671 | 146..472 | 1530 | 97.9 | Plus |
X | 23542271 | X | 21042519..21042647 | 17..145 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:11:24 has no hits.
BS13994.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:35 Download gff for
BS13994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1742-PB | 1..456 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:26:28 Download gff for
BS13994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mgstl-RB | 30..492 | 12..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:17 Download gff for
BS13994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mgstl-RB | 30..492 | 12..476 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:17 Download gff for
BS13994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21042514..21042647 | 12..145 | 98 | -> | Plus |
X | 21043680..21044008 | 146..476 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:26:28 Download gff for
BS13994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20913541..20913674 | 12..145 | 98 | -> | Plus |
arm_X | 20914707..20915035 | 146..476 | 99 | | Plus |
BS13994.complete Sequence
488 bp assembled on 2006-11-01
GenBank Submission: FJ637578
> BS13994.complete
GAAGTTATCAGTCGACATGCTTAACCCCGAACTCATGTCGCTGGAGAACC
AGGTGTTCCGATGCTACCTGGGATGGTCGGCTATATTGATACTCAAGATC
TTCGCCGCTGGTATTTACACGGGTCTCATGCGCTTCTTTACGGCCACCTT
CGCCAACCCCGAGGACCTGATGTCCCCCAAGCTGAAGGTCAAGTTCGACG
ATCCGAACGTGGAGCGTGTGCGCCGTGCCCACCGCAACGACCTGGAGAAC
ATCCTGCCCTTCTTCGCCATCGGTCTGCTCTACGTCCTGACTGATCCGGC
CGCCTTTCTGGCCATCAACCTGTTCCGCGCCGTGGGCATCGCCCGCATCG
TCCACACACTGGTCTACGCCGTGGTCGTGGTGCCCCAGCCTTCCCGTGCC
CTCGCCTTCTTCGTGGCCTTGGGCGCCACCGTCTACATGGCCCTGCAGGT
CATCGCCTCGGCCGCCTTCTGAAAGCTTTCTAGACCAT
BS13994.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:08:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mgstl-RC | 456 | CG1742-PC | 1..456 | 17..472 | 2280 | 100 | Plus |
Mgstl-RB | 456 | CG1742-PB | 1..456 | 17..472 | 2280 | 100 | Plus |
Mgstl-RA | 459 | CG1742-PA | 133..459 | 146..472 | 1635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mgstl-RC | 951 | CG1742-RC | 395..850 | 17..472 | 2280 | 100 | Plus |
Mgstl-RB | 591 | CG1742-RB | 35..490 | 17..472 | 2280 | 100 | Plus |
Mgstl-RA | 660 | CG1742-RA | 233..559 | 146..472 | 1635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21043680..21044006 | 146..472 | 1635 | 100 | Plus |
2L | 23513712 | 2L | 22226345..22226671 | 146..472 | 1530 | 97.9 | Plus |
X | 23542271 | X | 21042519..21042647 | 17..145 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:08:01 has no hits.
BS13994.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:30 Download gff for
BS13994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mgstl-RB | 1..456 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:49 Download gff for
BS13994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mgstl-RB | 26..488 | 12..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:45 Download gff for
BS13994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mgstl-RB | 35..489 | 17..471 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:30 Download gff for
BS13994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mgstl-RB | 26..488 | 12..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:32 Download gff for
BS13994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mgstl-RB | 35..489 | 17..471 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:32 Download gff for
BS13994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21042519..21042647 | 17..145 | 100 | -> | Plus |
X | 21043680..21044005 | 146..471 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:45 Download gff for
BS13994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20913546..20913674 | 17..145 | 100 | -> | Plus |
arm_X | 20914707..20915032 | 146..471 | 100 | | Plus |
BS13994.pep Sequence
Translation from 16 to 471
> BS13994.pep
MLNPELMSLENQVFRCYLGWSAILILKIFAAGIYTGLMRFFTATFANPED
LMSPKLKVKFDDPNVERVRRAHRNDLENILPFFAIGLLYVLTDPAAFLAI
NLFRAVGIARIVHTLVYAVVVVPQPSRALAFFVALGATVYMALQVIASAA
F*
BS13994.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mgstl-PC | 151 | CG1742-PC | 1..151 | 1..151 | 757 | 100 | Plus |
Mgstl-PB | 151 | CG1742-PB | 1..151 | 1..151 | 757 | 100 | Plus |
Mgstl-PA | 152 | CG1742-PA | 6..152 | 5..151 | 614 | 83 | Plus |
CG33178-PC | 165 | CG33178-PC | 17..157 | 5..145 | 392 | 54.6 | Plus |
CG33178-PA | 165 | CG33178-PA | 17..157 | 5..145 | 392 | 54.6 | Plus |