Clone BS13994 Report

Search the DGRC for BS13994

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:139
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptMgstl-RB
Protein status:BS13994.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13994.3prime Sequence

486 bp (486 high quality bases) assembled on 2006-10-13

> BS13994.3prime
ATGGTCTAGAAAGCTTTCAGAAGGCGGCCGAGGCGATGACCTGCAGGGCC
ATGTAGACGGTGGCGCCCAAGGCCACGAAGAAGGCGAGGGCACGGGAAGG
CTGGGGCACCACGACCACGGCGTAGACCAGTGTGTGGACGATGCGGGCGA
TGCCCACGGCGCGGAACAGGTTGATGGCCAGAAAGGCGGCCGGATCAGTC
AGGACGTAGAGCAGACCGATGGCGAAGAAGGGCAGGATGTTCTCCAGGTC
GTTGCGGTGGGCACGGCGCACACGCTCCACGTTCGGATCGTCGAACTTGA
CCTTCAGCTTGGGGGACATCAGGTCCTCGGGGTTGGCGAAGGTGGCCGTA
AAGAAGCGCATGAGACCCGTGTAAATACCAGCGGCGAAGATCTTGAGTAT
CAATATAGCCGACCATCCCAGGTAGCATCGGAACACCTGGTTCTCCAGCG
ACATGAGTTCGGGGTTAAGCATGTCGACTGATAACT

BS13994.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG1742-PB 456 Mgstl-RB 1..456 472..17 2280 100 Minus
CG1742-PA 459 Mgstl-RA 133..459 343..17 1635 100 Minus
CG32510-PA 387 CG32510-RA 7..333 17..343 1635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
Mgstl-RC 951 CG1742-RC 395..850 472..17 2280 100 Minus
Mgstl-RB 591 CG1742-RB 35..490 472..17 2280 100 Minus
Mgstl-RA 660 CG1742-RA 233..559 343..17 1635 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21043680..21044006 343..17 1635 100 Minus
2L 23513712 2L 22226345..22226671 343..17 1530 97.9 Minus
X 23542271 X 21042519..21042647 472..344 645 100 Minus
Blast to na_te.dros performed on 2015-02-08 12:07:39 has no hits.

BS13994.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:35 Download gff for BS13994.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1742-PB 1..456 17..472 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:00 Download gff for BS13994.3prime
Subject Subject Range Query Range Percent Splice Strand
Mgstl-RB 30..492 13..477 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:44 Download gff for BS13994.3prime
Subject Subject Range Query Range Percent Splice Strand
Mgstl-RB 30..492 13..477 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:44 Download gff for BS13994.3prime
Subject Subject Range Query Range Percent Splice Strand
X 21042514..21042647 344..477 98 -> Minus
X 21043680..21044008 13..343 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:00 Download gff for BS13994.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20913541..20913674 344..477 98 -> Minus
arm_X 20914707..20915035 13..343 99   Minus

BS13994.5prime Sequence

486 bp (486 high quality bases) assembled on 2006-10-13

> BS13994.5prime
GAAGTTATCAGTCGACATGCTTAACCCCGAACTCATGTCGCTGGAGAACC
AGGTGTTCCGATGCTACCTGGGATGGTCGGCTATATTGATACTCAAGATC
TTCGCCGCTGGTATTTACACGGGTCTCATGCGCTTCTTTACGGCCACCTT
CGCCAACCCCGAGGACCTGATGTCCCCCAAGCTGAAGGTCAAGTTCGACG
ATCCGAACGTGGAGCGTGTGCGCCGTGCCCACCGCAACGACCTGGAGAAC
ATCCTGCCCTTCTTCGCCATCGGTCTGCTCTACGTCCTGACTGATCCGGC
CGCCTTTCTGGCCATCAACCTGTTCCGCGCCGTGGGCATCGCCCGCATCG
TCCACACACTGGTCTACGCCGTGGTCGTGGTGCCCCAGCCTTCCCGTGCC
CTCGCCTTCTTCGTGGCCTTGGGCGCCACCGTCTACATGGCCCTGCAGGT
CATCGCCTCGGCCGCCTTCTGAAAGCTTTCTAGACC

BS13994.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG1742-PB 456 Mgstl-RB 1..456 17..472 2280 100 Plus
CG1742-PA 459 Mgstl-RA 133..459 146..472 1635 100 Plus
CG32510-PA 387 CG32510-RA 7..333 472..146 1635 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
Mgstl-RC 951 CG1742-RC 395..850 17..472 2280 100 Plus
Mgstl-RB 591 CG1742-RB 35..490 17..472 2280 100 Plus
Mgstl-RA 660 CG1742-RA 233..559 146..472 1635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21043680..21044006 146..472 1635 100 Plus
2L 23513712 2L 22226345..22226671 146..472 1530 97.9 Plus
X 23542271 X 21042519..21042647 17..145 645 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:11:24 has no hits.

BS13994.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:35 Download gff for BS13994.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1742-PB 1..456 17..472 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:26:28 Download gff for BS13994.5prime
Subject Subject Range Query Range Percent Splice Strand
Mgstl-RB 30..492 12..476 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:17 Download gff for BS13994.5prime
Subject Subject Range Query Range Percent Splice Strand
Mgstl-RB 30..492 12..476 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:17 Download gff for BS13994.5prime
Subject Subject Range Query Range Percent Splice Strand
X 21042514..21042647 12..145 98 -> Plus
X 21043680..21044008 146..476 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:26:28 Download gff for BS13994.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20913541..20913674 12..145 98 -> Plus
arm_X 20914707..20915035 146..476 99   Plus

BS13994.complete Sequence

488 bp assembled on 2006-11-01

GenBank Submission: FJ637578

> BS13994.complete
GAAGTTATCAGTCGACATGCTTAACCCCGAACTCATGTCGCTGGAGAACC
AGGTGTTCCGATGCTACCTGGGATGGTCGGCTATATTGATACTCAAGATC
TTCGCCGCTGGTATTTACACGGGTCTCATGCGCTTCTTTACGGCCACCTT
CGCCAACCCCGAGGACCTGATGTCCCCCAAGCTGAAGGTCAAGTTCGACG
ATCCGAACGTGGAGCGTGTGCGCCGTGCCCACCGCAACGACCTGGAGAAC
ATCCTGCCCTTCTTCGCCATCGGTCTGCTCTACGTCCTGACTGATCCGGC
CGCCTTTCTGGCCATCAACCTGTTCCGCGCCGTGGGCATCGCCCGCATCG
TCCACACACTGGTCTACGCCGTGGTCGTGGTGCCCCAGCCTTCCCGTGCC
CTCGCCTTCTTCGTGGCCTTGGGCGCCACCGTCTACATGGCCCTGCAGGT
CATCGCCTCGGCCGCCTTCTGAAAGCTTTCTAGACCAT

BS13994.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:08:02
Subject Length Description Subject Range Query Range Score Percent Strand
Mgstl-RC 456 CG1742-PC 1..456 17..472 2280 100 Plus
Mgstl-RB 456 CG1742-PB 1..456 17..472 2280 100 Plus
Mgstl-RA 459 CG1742-PA 133..459 146..472 1635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:02
Subject Length Description Subject Range Query Range Score Percent Strand
Mgstl-RC 951 CG1742-RC 395..850 17..472 2280 100 Plus
Mgstl-RB 591 CG1742-RB 35..490 17..472 2280 100 Plus
Mgstl-RA 660 CG1742-RA 233..559 146..472 1635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21043680..21044006 146..472 1635 100 Plus
2L 23513712 2L 22226345..22226671 146..472 1530 97.9 Plus
X 23542271 X 21042519..21042647 17..145 645 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:08:01 has no hits.

BS13994.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:30 Download gff for BS13994.complete
Subject Subject Range Query Range Percent Splice Strand
Mgstl-RB 1..456 17..472 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:49 Download gff for BS13994.complete
Subject Subject Range Query Range Percent Splice Strand
Mgstl-RB 26..488 12..476 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:45 Download gff for BS13994.complete
Subject Subject Range Query Range Percent Splice Strand
Mgstl-RB 35..489 17..471 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:30 Download gff for BS13994.complete
Subject Subject Range Query Range Percent Splice Strand
Mgstl-RB 26..488 12..476 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:32 Download gff for BS13994.complete
Subject Subject Range Query Range Percent Splice Strand
Mgstl-RB 35..489 17..471 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:32 Download gff for BS13994.complete
Subject Subject Range Query Range Percent Splice Strand
X 21042519..21042647 17..145 100 -> Plus
X 21043680..21044005 146..471 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:45 Download gff for BS13994.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20913546..20913674 17..145 100 -> Plus
arm_X 20914707..20915032 146..471 100   Plus

BS13994.pep Sequence

Translation from 16 to 471

> BS13994.pep
MLNPELMSLENQVFRCYLGWSAILILKIFAAGIYTGLMRFFTATFANPED
LMSPKLKVKFDDPNVERVRRAHRNDLENILPFFAIGLLYVLTDPAAFLAI
NLFRAVGIARIVHTLVYAVVVVPQPSRALAFFVALGATVYMALQVIASAA
F*

BS13994.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:37
Subject Length Description Subject Range Query Range Score Percent Strand
Mgstl-PC 151 CG1742-PC 1..151 1..151 757 100 Plus
Mgstl-PB 151 CG1742-PB 1..151 1..151 757 100 Plus
Mgstl-PA 152 CG1742-PA 6..152 5..151 614 83 Plus
CG33178-PC 165 CG33178-PC 17..157 5..145 392 54.6 Plus
CG33178-PA 165 CG33178-PA 17..157 5..145 392 54.6 Plus