Clone BS13995 Report

Search the DGRC for BS13995

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:139
Well:95
Vector:pDNR-Dual
Associated Gene/Transcriptfok-RA
Protein status:BS13995.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13995.3prime Sequence

420 bp (420 high quality bases) assembled on 2006-10-13

> BS13995.3prime
ATGGTCTAGAAAGCTTTCACACCTTGCAGCTTTGCGGGGCGGCAAGGACG
GTCGACTGGCTGTGATTGTGGGTGTGCTCCAGCTCATGCTCGTGCTCGTG
CATGTCCTCCTCGTCCTCGCAGATGCTGTCATGGTGCTTCCTTTGCTCCC
GCTTGCGCATGTAGTTGATGAGCGGCCGCTTCTTGTGCTCCTTGCAGAAT
GGGCAGTCCTTGCGCATCTGCTTCTCGGACTTTATCTGCTTGCACTTTTC
TTGCACTCGACTGTAGCAGTCCTTGACCGCGTGTGAGGAAGTGGTGGACT
CCAGGGTACCATAGGGGAACTCCTCGTAGTCGCGGTAGTAGCCGCTGCGC
ATGGACCCGCCATATGCCATTGTGGTGTCGCTGACGCAGAATCCCCAAAC
ATCCATGTCGACTGATAACT

BS13995.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG10746-PA 390 fok-RA 1..390 406..17 1950 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
fok-RC 1903 CG43690-RC 334..726 409..17 1965 100 Minus
fok-RA 1205 CG43690-RA 334..726 409..17 1965 100 Minus
fok-RD 696 CG43690-RD 334..493 409..250 800 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20082783..20083017 17..251 1175 100 Plus
2L 23513712 2L 20084578..20084737 250..409 800 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:39:52 has no hits.

BS13995.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:35 Download gff for BS13995.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10746-PA 1..390 17..406 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:03 Download gff for BS13995.3prime
Subject Subject Range Query Range Percent Splice Strand
fok-RA 327..726 17..414 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:26:40 Download gff for BS13995.3prime
Subject Subject Range Query Range Percent Splice Strand
fok-RA 327..726 17..414 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:26:40 Download gff for BS13995.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20082783..20083015 17..249 100 <- Plus
2L 20084578..20084739 250..414 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:03 Download gff for BS13995.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20082783..20083015 17..249 100 <- Plus
arm_2L 20084578..20084739 250..414 98   Plus

BS13995.5prime Sequence

420 bp (420 high quality bases) assembled on 2006-10-13

> BS13995.5prime
GAAGTTATCAGTCGACATGGATGTTTGGGGATTCTGCGTCAGCGACACCA
CAATGGCATATGGCGGGTCCATGCGCAGCGGCTACTACCGCGACTACGAG
GAGTTCCCCTATGGTACCCTGGAGTCCACCACTTCCTCACACGCGGTCAA
GGACTGCTACAGTCGAGTGCAAGAAAAGTGCAAGCAGATAAAGTCCGAGA
AGCAGATGCGCAAGGACTGCCCATTCTGCAAGGAGCACAAGAAGCGGCCG
CTCATCAACTACATGCGCAAGCGGGAGCAAAGGAAGCACCATGACAGCAT
CTGCGAGGACGAGGAGGACATGCACGAGCACGAGCATGAGCTGGAGCACA
CCCACAATCACAGCCAGTCGACCGTCCTTGCCGCCCCGCAAAGCTGCAAG
GTGTGAAAGCTTTCTAGACC

BS13995.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG10746-PA 390 fok-RA 1..390 17..406 1950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
fok-RC 1903 CG43690-RC 334..726 14..406 1965 100 Plus
fok-RA 1205 CG43690-RA 334..726 14..406 1965 100 Plus
fok-RD 696 CG43690-RD 334..493 14..173 800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20082783..20083017 406..172 1175 100 Minus
2L 23513712 2L 20084578..20084737 173..14 800 100 Minus
Blast to na_te.dros performed on 2015-02-03 06:46:39 has no hits.

BS13995.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:36 Download gff for BS13995.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10746-PA 1..390 17..406 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:35 Download gff for BS13995.5prime
Subject Subject Range Query Range Percent Splice Strand
fok-RA 327..726 9..406 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:23 Download gff for BS13995.5prime
Subject Subject Range Query Range Percent Splice Strand
fok-RA 327..726 9..406 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:23 Download gff for BS13995.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20082783..20083015 174..406 100 <- Minus
2L 20084578..20084739 9..173 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:35 Download gff for BS13995.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20082783..20083015 174..406 100 <- Minus
arm_2L 20084578..20084739 9..173 98   Minus

BS13995.complete Sequence

422 bp assembled on 2006-11-01

GenBank Submission: FJ637579

> BS13995.complete
GAAGTTATCAGTCGACATGGATGTTTGGGGATTCTGCGTCAGCGACACCA
CAATGGCATATGGCGGGTCCATGCGCAGCGGCTACTACCGCGACTACGAG
GAGTTCCCCTATGGTACCCTGGAGTCCACCACTTCCTCACACGCGGTCAA
GGACTGCTACAGTCGAGTGCAAGAAAAGTGCAAGCAGATAAAGTCCGAGA
AGCAGATGCGCAAGGACTGCCCATTCTGCAAGGAGCACAAGAAGCGGCCG
CTCATCAACTACATGCGCAAGCGGGAGCAAAGGAAGCACCATGACAGCAT
CTGCGAGGACGAGGAGGACATGCACGAGCACGAGCATGAGCTGGAGCACA
CCCACAATCACAGCCAGTCGACCGTCCTTGCCGCCCCGCAAAGCTGCAAG
GTGTGAAAGCTTTCTAGACCAT

BS13995.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
fok-RC 390 CG43690-PC 1..390 17..406 1950 100 Plus
fok-RA 390 CG43690-PA 1..390 17..406 1950 100 Plus
fok-RD 312 CG43690-PD 1..157 17..173 785 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
fok-RC 1903 CG43690-RC 334..726 14..406 1965 100 Plus
fok-RA 1205 CG43690-RA 334..726 14..406 1965 100 Plus
fok-RD 696 CG43690-RD 334..493 14..173 800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:12:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20082783..20083017 406..172 1175 100 Minus
2L 23513712 2L 20084578..20084737 173..14 800 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:12:11 has no hits.

BS13995.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:31 Download gff for BS13995.complete
Subject Subject Range Query Range Percent Splice Strand
fok-RA 1..390 17..406 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:51 Download gff for BS13995.complete
Subject Subject Range Query Range Percent Splice Strand
fok-RA 324..723 9..406 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:53 Download gff for BS13995.complete
Subject Subject Range Query Range Percent Splice Strand
fok-RA 337..725 17..405 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:31 Download gff for BS13995.complete
Subject Subject Range Query Range Percent Splice Strand
fok-RA 324..723 9..406 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:20:42 Download gff for BS13995.complete
Subject Subject Range Query Range Percent Splice Strand
fok-RA 337..725 17..405 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:20:42 Download gff for BS13995.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20082784..20083015 174..405 100 <- Minus
2L 20084578..20084734 17..173 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:53 Download gff for BS13995.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20082784..20083015 174..405 100 <- Minus
arm_2L 20084578..20084734 17..173 100   Minus

BS13995.pep Sequence

Translation from 16 to 405

> BS13995.pep
MDVWGFCVSDTTMAYGGSMRSGYYRDYEEFPYGTLESTTSSHAVKDCYSR
VQEKCKQIKSEKQMRKDCPFCKEHKKRPLINYMRKREQRKHHDSICEDEE
DMHEHEHELEHTHNHSQSTVLAAPQSCKV*

BS13995.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:35
Subject Length Description Subject Range Query Range Score Percent Strand
fok-PC 129 CG43690-PC 1..129 1..129 720 100 Plus
fok-PA 129 CG43690-PA 1..129 1..129 720 100 Plus
fok-PD 103 CG43690-PD 1..81 1..90 292 67.8 Plus