Clone Sequence Records
BS13995.3prime Sequence
420 bp (420 high quality bases) assembled on 2006-10-13
> BS13995.3prime
ATGGTCTAGAAAGCTTTCACACCTTGCAGCTTTGCGGGGCGGCAAGGACG
GTCGACTGGCTGTGATTGTGGGTGTGCTCCAGCTCATGCTCGTGCTCGTG
CATGTCCTCCTCGTCCTCGCAGATGCTGTCATGGTGCTTCCTTTGCTCCC
GCTTGCGCATGTAGTTGATGAGCGGCCGCTTCTTGTGCTCCTTGCAGAAT
GGGCAGTCCTTGCGCATCTGCTTCTCGGACTTTATCTGCTTGCACTTTTC
TTGCACTCGACTGTAGCAGTCCTTGACCGCGTGTGAGGAAGTGGTGGACT
CCAGGGTACCATAGGGGAACTCCTCGTAGTCGCGGTAGTAGCCGCTGCGC
ATGGACCCGCCATATGCCATTGTGGTGTCGCTGACGCAGAATCCCCAAAC
ATCCATGTCGACTGATAACT
BS13995.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10746-PA | 390 | fok-RA | 1..390 | 406..17 | 1950 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:39:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fok-RC | 1903 | CG43690-RC | 334..726 | 409..17 | 1965 | 100 | Minus |
fok-RA | 1205 | CG43690-RA | 334..726 | 409..17 | 1965 | 100 | Minus |
fok-RD | 696 | CG43690-RD | 334..493 | 409..250 | 800 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:39:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20082783..20083017 | 17..251 | 1175 | 100 | Plus |
2L | 23513712 | 2L | 20084578..20084737 | 250..409 | 800 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:39:52 has no hits.
BS13995.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:35 Download gff for
BS13995.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10746-PA | 1..390 | 17..406 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:03 Download gff for
BS13995.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fok-RA | 327..726 | 17..414 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:26:40 Download gff for
BS13995.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fok-RA | 327..726 | 17..414 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:26:40 Download gff for
BS13995.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20082783..20083015 | 17..249 | 100 | <- | Plus |
2L | 20084578..20084739 | 250..414 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:03 Download gff for
BS13995.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20082783..20083015 | 17..249 | 100 | <- | Plus |
arm_2L | 20084578..20084739 | 250..414 | 98 | | Plus |
BS13995.5prime Sequence
420 bp (420 high quality bases) assembled on 2006-10-13
> BS13995.5prime
GAAGTTATCAGTCGACATGGATGTTTGGGGATTCTGCGTCAGCGACACCA
CAATGGCATATGGCGGGTCCATGCGCAGCGGCTACTACCGCGACTACGAG
GAGTTCCCCTATGGTACCCTGGAGTCCACCACTTCCTCACACGCGGTCAA
GGACTGCTACAGTCGAGTGCAAGAAAAGTGCAAGCAGATAAAGTCCGAGA
AGCAGATGCGCAAGGACTGCCCATTCTGCAAGGAGCACAAGAAGCGGCCG
CTCATCAACTACATGCGCAAGCGGGAGCAAAGGAAGCACCATGACAGCAT
CTGCGAGGACGAGGAGGACATGCACGAGCACGAGCATGAGCTGGAGCACA
CCCACAATCACAGCCAGTCGACCGTCCTTGCCGCCCCGCAAAGCTGCAAG
GTGTGAAAGCTTTCTAGACC
BS13995.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10746-PA | 390 | fok-RA | 1..390 | 17..406 | 1950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:46:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fok-RC | 1903 | CG43690-RC | 334..726 | 14..406 | 1965 | 100 | Plus |
fok-RA | 1205 | CG43690-RA | 334..726 | 14..406 | 1965 | 100 | Plus |
fok-RD | 696 | CG43690-RD | 334..493 | 14..173 | 800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:46:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20082783..20083017 | 406..172 | 1175 | 100 | Minus |
2L | 23513712 | 2L | 20084578..20084737 | 173..14 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:46:39 has no hits.
BS13995.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:36 Download gff for
BS13995.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10746-PA | 1..390 | 17..406 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:35 Download gff for
BS13995.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fok-RA | 327..726 | 9..406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:23 Download gff for
BS13995.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fok-RA | 327..726 | 9..406 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:23 Download gff for
BS13995.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20082783..20083015 | 174..406 | 100 | <- | Minus |
2L | 20084578..20084739 | 9..173 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:35 Download gff for
BS13995.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20082783..20083015 | 174..406 | 100 | <- | Minus |
arm_2L | 20084578..20084739 | 9..173 | 98 | | Minus |
BS13995.complete Sequence
422 bp assembled on 2006-11-01
GenBank Submission: FJ637579
> BS13995.complete
GAAGTTATCAGTCGACATGGATGTTTGGGGATTCTGCGTCAGCGACACCA
CAATGGCATATGGCGGGTCCATGCGCAGCGGCTACTACCGCGACTACGAG
GAGTTCCCCTATGGTACCCTGGAGTCCACCACTTCCTCACACGCGGTCAA
GGACTGCTACAGTCGAGTGCAAGAAAAGTGCAAGCAGATAAAGTCCGAGA
AGCAGATGCGCAAGGACTGCCCATTCTGCAAGGAGCACAAGAAGCGGCCG
CTCATCAACTACATGCGCAAGCGGGAGCAAAGGAAGCACCATGACAGCAT
CTGCGAGGACGAGGAGGACATGCACGAGCACGAGCATGAGCTGGAGCACA
CCCACAATCACAGCCAGTCGACCGTCCTTGCCGCCCCGCAAAGCTGCAAG
GTGTGAAAGCTTTCTAGACCAT
BS13995.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:12:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fok-RC | 390 | CG43690-PC | 1..390 | 17..406 | 1950 | 100 | Plus |
fok-RA | 390 | CG43690-PA | 1..390 | 17..406 | 1950 | 100 | Plus |
fok-RD | 312 | CG43690-PD | 1..157 | 17..173 | 785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fok-RC | 1903 | CG43690-RC | 334..726 | 14..406 | 1965 | 100 | Plus |
fok-RA | 1205 | CG43690-RA | 334..726 | 14..406 | 1965 | 100 | Plus |
fok-RD | 696 | CG43690-RD | 334..493 | 14..173 | 800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:12:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20082783..20083017 | 406..172 | 1175 | 100 | Minus |
2L | 23513712 | 2L | 20084578..20084737 | 173..14 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:12:11 has no hits.
BS13995.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:31 Download gff for
BS13995.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fok-RA | 1..390 | 17..406 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:51 Download gff for
BS13995.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fok-RA | 324..723 | 9..406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:53 Download gff for
BS13995.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fok-RA | 337..725 | 17..405 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:31 Download gff for
BS13995.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fok-RA | 324..723 | 9..406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:20:42 Download gff for
BS13995.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fok-RA | 337..725 | 17..405 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:20:42 Download gff for
BS13995.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20082784..20083015 | 174..405 | 100 | <- | Minus |
2L | 20084578..20084734 | 17..173 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:53 Download gff for
BS13995.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20082784..20083015 | 174..405 | 100 | <- | Minus |
arm_2L | 20084578..20084734 | 17..173 | 100 | | Minus |
BS13995.pep Sequence
Translation from 16 to 405
> BS13995.pep
MDVWGFCVSDTTMAYGGSMRSGYYRDYEEFPYGTLESTTSSHAVKDCYSR
VQEKCKQIKSEKQMRKDCPFCKEHKKRPLINYMRKREQRKHHDSICEDEE
DMHEHEHELEHTHNHSQSTVLAAPQSCKV*
BS13995.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fok-PC | 129 | CG43690-PC | 1..129 | 1..129 | 720 | 100 | Plus |
fok-PA | 129 | CG43690-PA | 1..129 | 1..129 | 720 | 100 | Plus |
fok-PD | 103 | CG43690-PD | 1..81 | 1..90 | 292 | 67.8 | Plus |