Clone Sequence Records
BS14003.3prime Sequence
571 bp (540 high quality bases) assembled on 2006-10-13
> BS14003.3prime
ATGGTCTAGAAAGCTTTTAGTTCTTCTGCTTTTGGTTGTAGTTTTTCAAG
GCCTCGGCCAGTTCCGATAGTGCCGATTTCTGGGCCTTCTCCTGCTTGCG
CTCCTGCTGCTTCTTCAACTGCTTGCACAGTTTCTTCAACTGCTTGCGCT
CCTTCTTTGCCGATTTCTTCTCGCCACTGTCGTCCTCTTCGGACGAGGAA
GATCCACCCCGCTTCTTCCGGCGGCTCAACTCGGCACATTGTTGCAGCAG
CTTGGCGGCCTCATCATCATCGGGCTTTGGAGTGGTGGTCGTAGTAGTGG
TTGTGGTGGTGCTCGGGGTGGTGCTGGGAGTGGTGCTGGGAGTGGTGCTG
GGAGTGGTGCTGGTGGTGGTGCTCGGGGTGGTGCTTGTGGTAGTCGTACT
GGCAGTTGTGGACTCTGACTTGGGCTTTTCCGTTGTCGTCGTCGTAGTCG
TAGTGGTTGTAGACGACTCTTTAGGCTTCGGAGTCGTCGTGGTGGTGGTG
GTTGAGGTGGTGGTGCTCGGCGTAGTGCTCTCCTGTGGCCTGGCCAAAAT
CGTGGAGCAGCTGGCCACCAG
BS14003.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14419-PA | 588 | CG14419-RA | 34..588 | 571..17 | 2775 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:17:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14419-RA | 729 | CG14419-RA | 77..631 | 571..17 | 2775 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:17:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2885284..2885838 | 17..571 | 2775 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:17:13 has no hits.
BS14003.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:38 Download gff for
BS14003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14419-PA | 34..588 | 17..571 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:46:57 Download gff for
BS14003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14419-RA | 77..631 | 17..571 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:31:45 Download gff for
BS14003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14419-RA | 77..631 | 17..571 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:31:45 Download gff for
BS14003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2885284..2885838 | 17..571 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:46:57 Download gff for
BS14003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2779317..2779871 | 17..571 | 100 | | Plus |
BS14003.5prime Sequence
583 bp (581 high quality bases) assembled on 2006-10-13
> BS14003.5prime
GAAGTTATCAGTCGACATGCGCGCTTCCATACTGTTTTTCGGCCTGCTGC
TGGTGGCCAGCTGCTCCACGATTTTGGCCAGGCCACAGGAGAGCACTACG
CCGAGCACCACCACCTCAACCACCACCACCACGACGACTCCGAAGCCTAA
AGAGTCGTCTACAACCACTACGACTACGACGACGACAACGGAAAAGCCCA
AGTCAGAGTCCACAACTGCCAGTACGACTACCACAAGCACCACCCCGAGC
ACCACCACCAGCACCACTCCCAGCACCACTCCCAGCACCACTCCCAGCAC
CACCCCGAGCACCACCACAACCACTACTACGACCACCACTCCAAAGCCCG
ATGATGATGAGGCCGCCAAGCTGCTGCAACAATGTGCCGAGTTGAGCCGC
CGGAAGAAGCGGGGTGGATCTTCCTCGTCCGAAGAGGACGACAGTGGCGA
GAAGAAATCGGCAAAGAAGGAGCGCAAGCAGTTGAAGAAACTGTGCAAGC
AGTTGAAGAAGCAGCAGGAGCGCAAGCAGGAGAAGGCCCAGAAATCGGCA
CTATCGGAACTGGCCGAGGCCTTGAAAAACTAC
BS14003.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14419-PA | 588 | CG14419-RA | 1..567 | 17..583 | 2835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:28:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14419-RA | 729 | CG14419-RA | 44..610 | 17..583 | 2835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:28:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2885305..2885871 | 583..17 | 2835 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:28:34 has no hits.
BS14003.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:38 Download gff for
BS14003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14419-PA | 1..567 | 17..583 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:37 Download gff for
BS14003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14419-RA | 33..610 | 7..583 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:15:44 Download gff for
BS14003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14419-RA | 33..610 | 7..583 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:15:44 Download gff for
BS14003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2885305..2885882 | 7..583 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:37 Download gff for
BS14003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2779338..2779915 | 7..583 | 99 | | Minus |
BS14003.complete Sequence
620 bp assembled on 2006-11-01
GenBank Submission: FJ637580
> BS14003.complete
GAAGTTATCAGTCGACATGCGCGCTTCCATACTGTTTTTCGGCCTGCTGC
TGGTGGCCAGCTGCTCCACGATTTTGGCCAGGCCACAGGAGAGCACTACG
CCGAGCACCACCACCTCAACCACCACCACCACGACGACTCCGAAGCCTAA
AGAGTCGTCTACAACCACTACGACTACGACGACGACAACGGAAAAGCCCA
AGTCAGAGTCCACAACTGCCAGTACGACTACCACAAGCACCACCCCGAGC
ACCACCACCAGCACCACTCCCAGCACCACTCCCAGCACCACTCCCAGCAC
CACCCCGAGCACCACCACAACCACTACTACGACCACCACTCCAAAGCCCG
ATGATGATGAGGCCGCCAAGCTGCTGCAACAATGTGCCGAGTTGAGCCGC
CGGAAGAAGCGGGGTGGATCTTCCTCGTCCGAAGAGGACGACAGTGGCGA
GAAGAAATCGGCAAAGAAGGAGCGCAAGCAGTTGAAGAAACTGTGCAAGC
AGTTGAAGAAGCAGCAGGAGCGCAAGCAGGAGAAGGCCCAGAAATCGGCA
CTATCGGAACTGGCCGAGGCCTTGAAAAACTACAACCAAAAGCAGAAGAA
CTAAAAGCTTTCTAGACCAT
BS14003.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:10:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14419-RA | 588 | CG14419-PA | 1..588 | 17..604 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:10:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14419-RA | 729 | CG14419-RA | 44..631 | 17..604 | 2940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:10:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2885284..2885871 | 604..17 | 2940 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:10:50 has no hits.
BS14003.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:33 Download gff for
BS14003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14419-RA | 1..588 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:52 Download gff for
BS14003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14419-RA | 30..628 | 7..604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:47:01 Download gff for
BS14003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14419-RA | 44..629 | 17..602 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:33 Download gff for
BS14003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14419-RA | 30..628 | 7..604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:50 Download gff for
BS14003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14419-RA | 44..629 | 17..602 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:50 Download gff for
BS14003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2885286..2885871 | 17..602 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:47:01 Download gff for
BS14003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2779319..2779904 | 17..602 | 100 | | Minus |
BS14003.pep Sequence
Translation from 16 to 603
> BS14003.pep
MRASILFFGLLLVASCSTILARPQESTTPSTTTSTTTTTTTPKPKESSTT
TTTTTTTTEKPKSESTTASTTTTSTTPSTTTSTTPSTTPSTTPSTTPSTT
TTTTTTTTPKPDDDEAAKLLQQCAELSRRKKRGGSSSSEEDDSGEKKSAK
KERKQLKKLCKQLKKQQERKQEKAQKSALSELAEALKNYNQKQKN*
BS14003.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14419-PA | 195 | CG14419-PA | 1..195 | 1..195 | 971 | 100 | Plus |
Muc96D-PA | 881 | CG31439-PA | 155..236 | 26..107 | 260 | 63.4 | Plus |
Muc96D-PA | 881 | CG31439-PA | 323..406 | 28..111 | 259 | 61.9 | Plus |
Muc96D-PA | 881 | CG31439-PA | 273..354 | 26..107 | 257 | 62.2 | Plus |
Muc96D-PA | 881 | CG31439-PA | 205..285 | 28..108 | 256 | 63 | Plus |
Muc96D-PA | 881 | CG31439-PA | 366..448 | 26..108 | 256 | 62.7 | Plus |
Muc96D-PA | 881 | CG31439-PA | 444..530 | 26..108 | 255 | 60.9 | Plus |
CG34220-PA | 726 | CG34220-PA | 86..168 | 26..108 | 254 | 62.7 | Plus |
CG34220-PA | 726 | CG34220-PA | 90..176 | 26..108 | 254 | 60.9 | Plus |
Muc96D-PA | 881 | CG31439-PA | 476..559 | 26..108 | 253 | 61.9 | Plus |
CG34220-PA | 726 | CG34220-PA | 73..156 | 26..108 | 253 | 63.1 | Plus |
Muc96D-PA | 881 | CG31439-PA | 188..277 | 26..108 | 252 | 58.9 | Plus |
Muc96D-PA | 881 | CG31439-PA | 285..372 | 17..108 | 252 | 59.1 | Plus |
Muc96D-PA | 881 | CG31439-PA | 306..395 | 26..108 | 252 | 58.9 | Plus |
Muc96D-PA | 881 | CG31439-PA | 167..254 | 17..108 | 252 | 59.1 | Plus |
Muc96D-PA | 881 | CG31439-PA | 564..646 | 26..108 | 252 | 61.4 | Plus |
Muc96D-PA | 881 | CG31439-PA | 138..221 | 26..108 | 251 | 63.1 | Plus |
Muc96D-PA | 881 | CG31439-PA | 339..421 | 26..108 | 250 | 60.2 | Plus |
Muc96D-PA | 881 | CG31439-PA | 421..503 | 26..108 | 250 | 60.2 | Plus |
Muc96D-PA | 881 | CG31439-PA | 486..585 | 17..108 | 250 | 55 | Plus |
Muc96D-PA | 881 | CG31439-PA | 221..306 | 26..108 | 248 | 60.5 | Plus |
Muc96D-PA | 881 | CG31439-PA | 405..485 | 28..108 | 248 | 60.5 | Plus |
Muc96D-PA | 881 | CG31439-PA | 231..314 | 26..108 | 247 | 61.9 | Plus |
Muc96D-PA | 881 | CG31439-PA | 256..339 | 26..108 | 247 | 61.9 | Plus |
Muc96D-PA | 881 | CG31439-PA | 368..456 | 26..108 | 247 | 60.7 | Plus |
Muc96D-PA | 881 | CG31439-PA | 452..534 | 26..108 | 247 | 60.2 | Plus |
Muc96D-PA | 881 | CG31439-PA | 145..239 | 15..109 | 246 | 52.6 | Plus |
Muc96D-PA | 881 | CG31439-PA | 248..335 | 26..108 | 246 | 59.1 | Plus |
Muc96D-PA | 881 | CG31439-PA | 125..217 | 16..108 | 245 | 53.8 | Plus |
Muc96D-PA | 881 | CG31439-PA | 263..357 | 15..109 | 245 | 52.6 | Plus |
Muc96D-PA | 881 | CG31439-PA | 508..593 | 26..108 | 245 | 59.3 | Plus |
CG34220-PA | 726 | CG34220-PA | 46..138 | 16..108 | 245 | 54.8 | Plus |
CG34220-PA | 726 | CG34220-PA | 110..198 | 26..112 | 245 | 57.3 | Plus |
Muc96D-PA | 881 | CG31439-PA | 205..286 | 27..108 | 244 | 61 | Plus |
Muc96D-PA | 881 | CG31439-PA | 298..380 | 26..108 | 244 | 59 | Plus |
Muc96D-PA | 881 | CG31439-PA | 347..429 | 26..108 | 244 | 60.2 | Plus |
Muc96D-PA | 881 | CG31439-PA | 427..511 | 26..109 | 244 | 61.2 | Plus |
Muc96D-PA | 881 | CG31439-PA | 610..692 | 26..108 | 244 | 60.2 | Plus |
Muc96D-PA | 881 | CG31439-PA | 613..695 | 26..108 | 244 | 60.2 | Plus |
Muc96D-PA | 881 | CG31439-PA | 180..262 | 26..108 | 244 | 59 | Plus |
Mur82C-PB | 578 | CG12586-PB | 179..273 | 17..108 | 244 | 52.6 | Plus |
Muc96D-PA | 881 | CG31439-PA | 341..425 | 26..108 | 243 | 60 | Plus |
Muc96D-PA | 881 | CG31439-PA | 378..473 | 17..108 | 243 | 54.2 | Plus |
Muc96D-PA | 881 | CG31439-PA | 414..507 | 15..108 | 243 | 54.3 | Plus |
Muc96D-PA | 881 | CG31439-PA | 461..541 | 28..107 | 243 | 61.7 | Plus |
Muc96D-PA | 881 | CG31439-PA | 505..601 | 17..111 | 243 | 53.6 | Plus |
Muc96D-PA | 881 | CG31439-PA | 526..616 | 26..108 | 243 | 57.1 | Plus |
Muc96D-PA | 881 | CG31439-PA | 561..650 | 17..108 | 243 | 57.4 | Plus |
Muc96D-PA | 881 | CG31439-PA | 568..654 | 17..108 | 243 | 56.5 | Plus |
Muc96D-PA | 881 | CG31439-PA | 625..719 | 17..111 | 243 | 53.7 | Plus |
Muc96D-PA | 881 | CG31439-PA | 228..310 | 26..108 | 242 | 59 | Plus |
Muc96D-PA | 881 | CG31439-PA | 473..555 | 26..108 | 242 | 59 | Plus |
Muc96D-PA | 881 | CG31439-PA | 580..669 | 26..108 | 242 | 57.8 | Plus |
CG34220-PA | 726 | CG34220-PA | 103..185 | 26..108 | 242 | 60.2 | Plus |
CG34220-PA | 726 | CG34220-PA | 268..366 | 23..112 | 242 | 54.5 | Plus |
Hmu-PA | 579 | CG3373-PA | 439..573 | 21..162 | 242 | 43.1 | Plus |
Muc96D-PA | 881 | CG31439-PA | 170..266 | 15..111 | 241 | 51.5 | Plus |
Muc96D-PA | 881 | CG31439-PA | 288..384 | 15..111 | 241 | 51.5 | Plus |
Muc96D-PA | 881 | CG31439-PA | 595..688 | 17..108 | 241 | 55.8 | Plus |
Muc96D-PA | 881 | CG31439-PA | 642..727 | 26..111 | 241 | 57 | Plus |
CG34220-PA | 726 | CG34220-PA | 104..186 | 26..108 | 238 | 59 | Plus |
CG34220-PA | 726 | CG34220-PA | 100..182 | 26..108 | 234 | 57.8 | Plus |
CG34220-PA | 726 | CG34220-PA | 102..184 | 26..108 | 234 | 57.8 | Plus |
CG34220-PA | 726 | CG34220-PA | 250..343 | 21..108 | 232 | 54.3 | Plus |
CG34220-PA | 726 | CG34220-PA | 54..141 | 21..108 | 230 | 55.7 | Plus |
CG34220-PA | 726 | CG34220-PA | 36..130 | 15..108 | 228 | 51.6 | Plus |
CG34220-PA | 726 | CG34220-PA | 65..146 | 27..108 | 226 | 57.3 | Plus |
Mur82C-PB | 578 | CG12586-PB | 216..308 | 26..108 | 224 | 53.8 | Plus |
Mur82C-PB | 578 | CG12586-PB | 198..293 | 13..108 | 223 | 47.9 | Plus |
Mur82C-PB | 578 | CG12586-PB | 222..313 | 17..108 | 223 | 52.1 | Plus |
CG34220-PA | 726 | CG34220-PA | 33..118 | 23..108 | 219 | 53.5 | Plus |
CG34220-PA | 726 | CG34220-PA | 499..648 | 23..156 | 218 | 38 | Plus |
Mur82C-PB | 578 | CG12586-PB | 229..315 | 15..107 | 214 | 51.6 | Plus |
Mur82C-PB | 578 | CG12586-PB | 199..282 | 27..109 | 211 | 55.8 | Plus |
CG34220-PA | 726 | CG34220-PA | 127..201 | 26..111 | 204 | 55.8 | Plus |
CG34220-PA | 726 | CG34220-PA | 529..629 | 16..112 | 202 | 47.7 | Plus |
CG34220-PA | 726 | CG34220-PA | 430..574 | 23..108 | 201 | 38.6 | Plus |
CG34220-PA | 726 | CG34220-PA | 302..396 | 26..111 | 199 | 45.3 | Plus |
CG34220-PA | 726 | CG34220-PA | 129..214 | 26..111 | 197 | 47.7 | Plus |
CG34220-PA | 726 | CG34220-PA | 298..382 | 26..111 | 193 | 50 | Plus |
Mur82C-PB | 578 | CG12586-PB | 255..334 | 26..109 | 186 | 50 | Plus |
CG34220-PA | 726 | CG34220-PA | 420..568 | 23..108 | 184 | 37.6 | Plus |
CG34220-PA | 726 | CG34220-PA | 236..331 | 23..108 | 179 | 44.8 | Plus |
Mur82C-PB | 578 | CG12586-PB | 188..258 | 34..109 | 178 | 55.3 | Plus |
Mur82C-PB | 578 | CG12586-PB | 279..368 | 26..114 | 177 | 46.7 | Plus |
CG34220-PA | 726 | CG34220-PA | 135..219 | 26..115 | 176 | 44.4 | Plus |
CG34220-PA | 726 | CG34220-PA | 402..501 | 21..115 | 174 | 40 | Plus |
CG34220-PA | 726 | CG34220-PA | 314..463 | 17..108 | 172 | 36 | Plus |
CG34220-PA | 726 | CG34220-PA | 385..480 | 23..112 | 169 | 41.7 | Plus |
CG34220-PA | 726 | CG34220-PA | 146..228 | 27..111 | 164 | 43.3 | Plus |
Mur82C-PB | 578 | CG12586-PB | 166..254 | 29..109 | 159 | 43.8 | Plus |
Mur82C-PB | 578 | CG12586-PB | 264..354 | 26..108 | 159 | 45.1 | Plus |