Clone BS14004 Report

Search the DGRC for BS14004

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:140
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG12998-RA
Protein status:BS14004.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14004.3prime Sequence

372 bp (372 high quality bases) assembled on 2006-10-13

> BS14004.3prime
ATGGTCTAGAAAGCTTTTACCACCATCCACTATTGGAGCTGGAACTGGAC
CATCCATTGCTGTTCCATCCGGAGTTGCCGCTGCTCCAACCAGAGTTTCC
ACCCCATCCGGAGTTGCCGCCCCATCCGGAGTTGCTACCCCATCCGGAGT
TACCGCCCCATCCAGAGTTTCCGCCCCATCCGGAGCCGCCGCCTCCTCCG
ATCTTTATGACCTTGATGACTTGCGGCTGCTGGGCAACCCAGCCACTATT
CCATCCGGAGCTGCTGCCGCCCCAAGGATTCGATCCCCAGCCCGAGGATC
GGACCAATCCGGCCGAAACACAGGCCACCAGTGCGCAGAGTACAATGAAT
ACCTTCATGTCGACTGATAACT

BS14004.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG12998-PA 342 CG12998-RA 1..342 358..17 1710 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG12998-RB 1121 CG12998-RB 315..657 358..16 1715 100 Minus
CG12998-RA 612 CG12998-RA 99..441 358..16 1715 100 Minus
CG12998-RB 1121 CG12998-RB 488..569 149..65 225 85.9 Minus
CG12998-RB 1121 CG12998-RB 524..608 185..104 225 85.9 Minus
CG12998-RA 612 CG12998-RA 272..353 149..65 225 85.9 Minus
CG12998-RA 612 CG12998-RA 308..392 185..104 225 85.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:46:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17218981..17219323 358..16 1715 100 Minus
X 23542271 X 17219154..17219235 149..65 195 84.7 Minus
X 23542271 X 17219190..17219274 185..104 195 84.7 Minus
Blast to na_te.dros performed on 2015-02-03 06:46:51 has no hits.

BS14004.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:38 Download gff for BS14004.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12998-PA 1..342 17..358 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:36 Download gff for BS14004.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12998-RA 93..439 16..366 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:25 Download gff for BS14004.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12998-RA 95..441 16..366 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:25 Download gff for BS14004.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17218977..17219323 16..366 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:36 Download gff for BS14004.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17113010..17113356 16..366 98   Minus

BS14004.5prime Sequence

372 bp (372 high quality bases) assembled on 2006-10-13

> BS14004.5prime
GAAGTTATCCTTCGACATGAAGGTATTCATTGTACTCTGCGCACTGGTGG
CCTGTGTTTCGGCCGGATTGGTCCGATCCTCGGGCTGGGGATCGAATCCT
TGGGGCGGCAGCAGCTCCGGATGGAATAGTGGCTGGGTTGCCCAGCAGCC
GCAAGTCATCAAGGTCATAAAGATCGGAGGAGGCGGCGGCTCCGGATGGG
GCGGAAACTCTGGATGGGGCGGTAACTCCGGATGGGGTAGCAACTCCGGA
TGGGGCGGCAACTCCGGATGGGGTGGAAACTCTGGTTGGAGCAGCGGCAA
CTCCGGATGGAACAGCAATGGATGGTCCAGTTCCAGCTCCAATAGTGGAT
GGTGGTAAAAGCTTTCTAGACC

BS14004.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG12998-PA 342 CG12998-RA 1..342 17..358 1710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG12998-RB 1121 CG12998-RB 315..657 17..359 1715 100 Plus
CG12998-RA 612 CG12998-RA 99..441 17..359 1715 100 Plus
CG12998-RB 1121 CG12998-RB 488..569 226..310 225 85.9 Plus
CG12998-RB 1121 CG12998-RB 524..608 190..271 225 85.9 Plus
CG12998-RA 612 CG12998-RA 272..353 226..310 225 85.9 Plus
CG12998-RA 612 CG12998-RA 308..392 190..271 225 85.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17218981..17219323 17..359 1715 100 Plus
X 23542271 X 17219154..17219235 226..310 195 84.7 Plus
X 23542271 X 17219190..17219274 190..271 195 84.7 Plus
Blast to na_te.dros performed on 2015-02-11 09:12:08 has no hits.

BS14004.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:39 Download gff for BS14004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12998-PA 1..342 17..358 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:03:22 Download gff for BS14004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12998-RA 97..439 17..359 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:23:15 Download gff for BS14004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12998-RA 99..441 17..359 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:23:15 Download gff for BS14004.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17218981..17219323 17..359 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:03:22 Download gff for BS14004.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17113014..17113356 17..359 100   Plus

BS14004.complete Sequence

374 bp assembled on 2006-11-01

GenBank Submission: FJ637581

> BS14004.complete
GAAGTTATCAGTCGACATGAAGGTATTCATTGTACTCTGCGCACTGGTGG
CCTGTGTTTCGGCCGGATTGGTCCGATCCTCGGGCTGGGGATCGAATCCT
TGGGGCGGCAGCAGCTCCGGATGGAATAGTGGCTGGGTTGCCCAGCAGCC
GCAAGTCATCAAGGTCATAAAGATCGGAGGAGGCGGCGGCTCCGGATGGG
GCGGAAACTCTGGATGGGGCGGTAACTCCGGATGGGGTAGCAACTCCGGA
TGGGGCGGCAACTCCGGATGGGGTGGAAACTCTGGTTGGAGCAGCGGCAA
CTCCGGATGGAACAGCAATGGATGGTCCAGTTCCAGCTCCAATAGTGGAT
GGTGGTAAAAGCTTTCTAGACCAT

BS14004.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:22:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG12998-RB 342 CG12998-PB 1..342 17..358 1710 100 Plus
CG12998-RA 342 CG12998-PA 1..342 17..358 1710 100 Plus
CG12998-RB 342 CG12998-PB 210..294 190..271 195 84.7 Plus
CG12998-RB 342 CG12998-PB 174..255 226..310 195 84.7 Plus
CG12998-RA 342 CG12998-PA 174..255 226..310 195 84.7 Plus
CG12998-RA 342 CG12998-PA 210..294 190..271 195 84.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:22:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12998-RB 1121 CG12998-RB 315..657 17..359 1715 100 Plus
CG12998-RA 612 CG12998-RA 99..441 17..359 1715 100 Plus
CG12998-RB 1121 CG12998-RB 488..569 226..310 195 84.7 Plus
CG12998-RB 1121 CG12998-RB 524..608 190..271 195 84.7 Plus
CG12998-RA 612 CG12998-RA 272..353 226..310 195 84.7 Plus
CG12998-RA 612 CG12998-RA 308..392 190..271 195 84.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:22:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17218981..17219323 17..359 1715 100 Plus
X 23542271 X 17219190..17219274 190..271 195 84.7 Plus
X 23542271 X 17219154..17219235 226..310 195 84.7 Plus
Blast to na_te.dros performed on 2014-11-27 01:22:13 has no hits.

BS14004.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:34 Download gff for BS14004.complete
Subject Subject Range Query Range Percent Splice Strand
CG12998-RA 1..342 17..358 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:54 Download gff for BS14004.complete
Subject Subject Range Query Range Percent Splice Strand
CG12998-RA 96..442 9..359 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:12 Download gff for BS14004.complete
Subject Subject Range Query Range Percent Splice Strand
CG12998-RA 97..436 17..356 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:35 Download gff for BS14004.complete
Subject Subject Range Query Range Percent Splice Strand
CG12998-RA 96..442 9..359 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:24:02 Download gff for BS14004.complete
Subject Subject Range Query Range Percent Splice Strand
CG12998-RA 99..438 17..356 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:24:02 Download gff for BS14004.complete
Subject Subject Range Query Range Percent Splice Strand
X 17218981..17219320 17..356 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:12 Download gff for BS14004.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17113014..17113353 17..356 100   Plus

BS14004.pep Sequence

Translation from 16 to 357

> BS14004.pep
MKVFIVLCALVACVSAGLVRSSGWGSNPWGGSSSGWNSGWVAQQPQVIKV
IKIGGGGGSGWGGNSGWGGNSGWGSNSGWGGNSGWGGNSGWSSGNSGWNS
NGWSSSSSNSGWW*

BS14004.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG12998-PB 113 CG12998-PB 1..113 1..113 660 100 Plus
CG12998-PA 113 CG12998-PA 1..113 1..113 660 100 Plus
CG34327-PA 220 CG34327-PA 15..131 7..109 182 40.5 Plus
CG13376-PB 200 CG13376-PB 1..147 1..112 178 34.2 Plus
CG34227-PA 104 CG34227-PA 54..102 55..113 177 50.8 Plus
CG34227-PA 104 CG34227-PA 55..101 35..98 176 45.3 Plus
CG34327-PA 220 CG34327-PA 57..174 21..113 170 39.2 Plus
CG34327-PA 220 CG34327-PA 133..218 14..112 163 43.3 Plus
CG34327-PA 220 CG34327-PA 83..183 21..112 144 35 Plus