Clone Sequence Records
BS14004.3prime Sequence
372 bp (372 high quality bases) assembled on 2006-10-13
> BS14004.3prime
ATGGTCTAGAAAGCTTTTACCACCATCCACTATTGGAGCTGGAACTGGAC
CATCCATTGCTGTTCCATCCGGAGTTGCCGCTGCTCCAACCAGAGTTTCC
ACCCCATCCGGAGTTGCCGCCCCATCCGGAGTTGCTACCCCATCCGGAGT
TACCGCCCCATCCAGAGTTTCCGCCCCATCCGGAGCCGCCGCCTCCTCCG
ATCTTTATGACCTTGATGACTTGCGGCTGCTGGGCAACCCAGCCACTATT
CCATCCGGAGCTGCTGCCGCCCCAAGGATTCGATCCCCAGCCCGAGGATC
GGACCAATCCGGCCGAAACACAGGCCACCAGTGCGCAGAGTACAATGAAT
ACCTTCATGTCGACTGATAACT
BS14004.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12998-PA | 342 | CG12998-RA | 1..342 | 358..17 | 1710 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:46:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12998-RB | 1121 | CG12998-RB | 315..657 | 358..16 | 1715 | 100 | Minus |
CG12998-RA | 612 | CG12998-RA | 99..441 | 358..16 | 1715 | 100 | Minus |
CG12998-RB | 1121 | CG12998-RB | 488..569 | 149..65 | 225 | 85.9 | Minus |
CG12998-RB | 1121 | CG12998-RB | 524..608 | 185..104 | 225 | 85.9 | Minus |
CG12998-RA | 612 | CG12998-RA | 272..353 | 149..65 | 225 | 85.9 | Minus |
CG12998-RA | 612 | CG12998-RA | 308..392 | 185..104 | 225 | 85.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:46:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17218981..17219323 | 358..16 | 1715 | 100 | Minus |
X | 23542271 | X | 17219154..17219235 | 149..65 | 195 | 84.7 | Minus |
X | 23542271 | X | 17219190..17219274 | 185..104 | 195 | 84.7 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:46:51 has no hits.
BS14004.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:38 Download gff for
BS14004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12998-PA | 1..342 | 17..358 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:36 Download gff for
BS14004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12998-RA | 93..439 | 16..366 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:25 Download gff for
BS14004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12998-RA | 95..441 | 16..366 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:25 Download gff for
BS14004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17218977..17219323 | 16..366 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:36 Download gff for
BS14004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17113010..17113356 | 16..366 | 98 | | Minus |
BS14004.5prime Sequence
372 bp (372 high quality bases) assembled on 2006-10-13
> BS14004.5prime
GAAGTTATCCTTCGACATGAAGGTATTCATTGTACTCTGCGCACTGGTGG
CCTGTGTTTCGGCCGGATTGGTCCGATCCTCGGGCTGGGGATCGAATCCT
TGGGGCGGCAGCAGCTCCGGATGGAATAGTGGCTGGGTTGCCCAGCAGCC
GCAAGTCATCAAGGTCATAAAGATCGGAGGAGGCGGCGGCTCCGGATGGG
GCGGAAACTCTGGATGGGGCGGTAACTCCGGATGGGGTAGCAACTCCGGA
TGGGGCGGCAACTCCGGATGGGGTGGAAACTCTGGTTGGAGCAGCGGCAA
CTCCGGATGGAACAGCAATGGATGGTCCAGTTCCAGCTCCAATAGTGGAT
GGTGGTAAAAGCTTTCTAGACC
BS14004.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12998-PA | 342 | CG12998-RA | 1..342 | 17..358 | 1710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:12:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12998-RB | 1121 | CG12998-RB | 315..657 | 17..359 | 1715 | 100 | Plus |
CG12998-RA | 612 | CG12998-RA | 99..441 | 17..359 | 1715 | 100 | Plus |
CG12998-RB | 1121 | CG12998-RB | 488..569 | 226..310 | 225 | 85.9 | Plus |
CG12998-RB | 1121 | CG12998-RB | 524..608 | 190..271 | 225 | 85.9 | Plus |
CG12998-RA | 612 | CG12998-RA | 272..353 | 226..310 | 225 | 85.9 | Plus |
CG12998-RA | 612 | CG12998-RA | 308..392 | 190..271 | 225 | 85.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:12:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17218981..17219323 | 17..359 | 1715 | 100 | Plus |
X | 23542271 | X | 17219154..17219235 | 226..310 | 195 | 84.7 | Plus |
X | 23542271 | X | 17219190..17219274 | 190..271 | 195 | 84.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:12:08 has no hits.
BS14004.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:39 Download gff for
BS14004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12998-PA | 1..342 | 17..358 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:03:22 Download gff for
BS14004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12998-RA | 97..439 | 17..359 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:23:15 Download gff for
BS14004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12998-RA | 99..441 | 17..359 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:23:15 Download gff for
BS14004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17218981..17219323 | 17..359 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:03:22 Download gff for
BS14004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17113014..17113356 | 17..359 | 100 | | Plus |
BS14004.complete Sequence
374 bp assembled on 2006-11-01
GenBank Submission: FJ637581
> BS14004.complete
GAAGTTATCAGTCGACATGAAGGTATTCATTGTACTCTGCGCACTGGTGG
CCTGTGTTTCGGCCGGATTGGTCCGATCCTCGGGCTGGGGATCGAATCCT
TGGGGCGGCAGCAGCTCCGGATGGAATAGTGGCTGGGTTGCCCAGCAGCC
GCAAGTCATCAAGGTCATAAAGATCGGAGGAGGCGGCGGCTCCGGATGGG
GCGGAAACTCTGGATGGGGCGGTAACTCCGGATGGGGTAGCAACTCCGGA
TGGGGCGGCAACTCCGGATGGGGTGGAAACTCTGGTTGGAGCAGCGGCAA
CTCCGGATGGAACAGCAATGGATGGTCCAGTTCCAGCTCCAATAGTGGAT
GGTGGTAAAAGCTTTCTAGACCAT
BS14004.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:22:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12998-RB | 342 | CG12998-PB | 1..342 | 17..358 | 1710 | 100 | Plus |
CG12998-RA | 342 | CG12998-PA | 1..342 | 17..358 | 1710 | 100 | Plus |
CG12998-RB | 342 | CG12998-PB | 210..294 | 190..271 | 195 | 84.7 | Plus |
CG12998-RB | 342 | CG12998-PB | 174..255 | 226..310 | 195 | 84.7 | Plus |
CG12998-RA | 342 | CG12998-PA | 174..255 | 226..310 | 195 | 84.7 | Plus |
CG12998-RA | 342 | CG12998-PA | 210..294 | 190..271 | 195 | 84.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:22:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12998-RB | 1121 | CG12998-RB | 315..657 | 17..359 | 1715 | 100 | Plus |
CG12998-RA | 612 | CG12998-RA | 99..441 | 17..359 | 1715 | 100 | Plus |
CG12998-RB | 1121 | CG12998-RB | 488..569 | 226..310 | 195 | 84.7 | Plus |
CG12998-RB | 1121 | CG12998-RB | 524..608 | 190..271 | 195 | 84.7 | Plus |
CG12998-RA | 612 | CG12998-RA | 272..353 | 226..310 | 195 | 84.7 | Plus |
CG12998-RA | 612 | CG12998-RA | 308..392 | 190..271 | 195 | 84.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:22:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17218981..17219323 | 17..359 | 1715 | 100 | Plus |
X | 23542271 | X | 17219190..17219274 | 190..271 | 195 | 84.7 | Plus |
X | 23542271 | X | 17219154..17219235 | 226..310 | 195 | 84.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:22:13 has no hits.
BS14004.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:34 Download gff for
BS14004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12998-RA | 1..342 | 17..358 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:54 Download gff for
BS14004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12998-RA | 96..442 | 9..359 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:12 Download gff for
BS14004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12998-RA | 97..436 | 17..356 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:35 Download gff for
BS14004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12998-RA | 96..442 | 9..359 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:24:02 Download gff for
BS14004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12998-RA | 99..438 | 17..356 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:24:02 Download gff for
BS14004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17218981..17219320 | 17..356 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:12 Download gff for
BS14004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17113014..17113353 | 17..356 | 100 | | Plus |
BS14004.pep Sequence
Translation from 16 to 357
> BS14004.pep
MKVFIVLCALVACVSAGLVRSSGWGSNPWGGSSSGWNSGWVAQQPQVIKV
IKIGGGGGSGWGGNSGWGGNSGWGSNSGWGGNSGWGGNSGWSSGNSGWNS
NGWSSSSSNSGWW*
BS14004.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12998-PB | 113 | CG12998-PB | 1..113 | 1..113 | 660 | 100 | Plus |
CG12998-PA | 113 | CG12998-PA | 1..113 | 1..113 | 660 | 100 | Plus |
CG34327-PA | 220 | CG34327-PA | 15..131 | 7..109 | 182 | 40.5 | Plus |
CG13376-PB | 200 | CG13376-PB | 1..147 | 1..112 | 178 | 34.2 | Plus |
CG34227-PA | 104 | CG34227-PA | 54..102 | 55..113 | 177 | 50.8 | Plus |
CG34227-PA | 104 | CG34227-PA | 55..101 | 35..98 | 176 | 45.3 | Plus |
CG34327-PA | 220 | CG34327-PA | 57..174 | 21..113 | 170 | 39.2 | Plus |
CG34327-PA | 220 | CG34327-PA | 133..218 | 14..112 | 163 | 43.3 | Plus |
CG34327-PA | 220 | CG34327-PA | 83..183 | 21..112 | 144 | 35 | Plus |