Clone Sequence Records
BS14005.complete Sequence
1166 bp assembled on 2009-12-07
GenBank Submission: KX801167
> BS14005.complete
GAAGTTATCAGTCGACATGATGATAGCCAGCAGCCTCGCCGTCTTATATG
GCATTGCCATCGTGTCGTCGATGGGCGTGCAATCTGCCCGAGCAGACTAC
GCCGACGACTGCACCACACCGGATGGCGATCAGGGTCAGTGCATGCCCTT
CTCCTCCTGCCGCACCATCGAGGAGCGCCTGACGGAAGCCCAGAAGGCCG
GACAGAAGGTGCCAGCCGACTACGCCAGTTACCTGCAGAAGGCACTCTGC
GGCGAGTTCAATGGAGTGCGCCACTTCTGCTGCCCCTCAGCCAACATTCA
GCACAACTCCAAGGTGATGAGCCTGTTCAAGGACGAAAACTTTGACTGCG
GCAACTTCCTCAGCCAAAGAGTGTCCAATGGCTACGAGGTGAAGCTCTCC
TCCAGACCCTGGATGGCCCTGCTCCGTTATCAGCAGTTTGGAGAGTCCAG
ATTCCTTTGCGGCGGAGCTATGATATCCGAGCGCTACATCCTGACTGCTG
CTCACTGTGTCCACGGTCTTCAGAACGATCTTTATGAGATCCGGCTCGGC
GAGCACCGCATCTCTACGGAGGAGGATTGCCGGCAGCAGGGACGCAAGAA
GAAATGTGCCCCGCCAGTTGTGAATGTGGGCATTGAGAAGCATCTGATTC
ATGAGAAGTACGACGCCCGCCACATCATGCATGACATAGCTCTCCTGAAG
CTCAACAGGAGCGTCCCCTTCCAGAAGCACATCAAGCCCATTTGCCTGCC
CATCACGGATGAGCTGAAGGAGAAGGCAGAGCAGATAAGCACCTACTTCG
TGACCGGCTGGGGCACCACGGAGAACGGCTCGTCGTCGGATGTGTTGCTC
CAGGCGAACGTGCCTCTGCAGCCGCGATCCGCCTGTTCCCAGGCCTACCG
CAGGGCAGTGCCGCTCAGTCAACTTTGCGTGGGTGGTGGCGACCTGCAGG
ACTCCTGCAAGGGCGACTCCGGCGGCCCCCTCCAAGCACCTGCCCAGTAC
TTGGGCGAGTATGCGCCGAAAATGGTCGAGTTCGGGATCGTCAGCCAGGG
TGTGGTCACCTGCGGGCAGATTAGCCTGCCCGGTCTGTACACAAATGTGG
GCGAGTACGTGCAGTGGATCACGGACACCATGGCCAGCAATGGCCTGTGA
AAGCTTTCTAGACCAT
BS14005.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:59:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| grass-RB | 1134 | CG5896-PB | 1..1134 | 17..1150 | 5655 | 99.9 | Plus |
| grass-RA | 1008 | CG5896-PA | 1..1008 | 143..1150 | 5025 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:59:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| grass-RB | 1317 | CG5896-RB | 88..1225 | 13..1150 | 5660 | 99.8 | Plus |
| grass-RA | 1391 | CG5896-RA | 242..1299 | 93..1150 | 5275 | 99.9 | Plus |
| grass-RA | 1391 | CG5896-RA | 88..170 | 13..95 | 400 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:59:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27159265..27159689 | 726..1150 | 2110 | 99.8 | Plus |
| 3R | 32079331 | 3R | 27158630..27158845 | 268..483 | 1080 | 100 | Plus |
| 3R | 32079331 | 3R | 27159008..27159201 | 532..725 | 970 | 100 | Plus |
| 3R | 32079331 | 3R | 27158189..27158364 | 93..268 | 880 | 100 | Plus |
| 3R | 32079331 | 3R | 27158035..27158117 | 13..95 | 400 | 98.8 | Plus |
| 3R | 32079331 | 3R | 27158903..27158951 | 483..531 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:59:31 has no hits.
BS14005.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:06 Download gff for
BS14005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grass-RB | 94..1226 | 17..1149 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:03:06 Download gff for
BS14005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grass-RB | 92..1224 | 17..1149 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:58 Download gff for
BS14005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grass-RB | 94..1226 | 17..1149 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:27 Download gff for
BS14005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grass-RB | 92..1224 | 17..1149 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:27 Download gff for
BS14005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27158039..27158117 | 17..95 | 100 | -> | Plus |
| 3R | 27158192..27158364 | 96..268 | 100 | -> | Plus |
| 3R | 27158631..27158844 | 269..482 | 100 | -> | Plus |
| 3R | 27158903..27158951 | 483..531 | 100 | -> | Plus |
| 3R | 27159008..27159201 | 532..725 | 100 | -> | Plus |
| 3R | 27159265..27159688 | 726..1149 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:03:06 Download gff for
BS14005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22983761..22983839 | 17..95 | 100 | -> | Plus |
| arm_3R | 22983914..22984086 | 96..268 | 100 | -> | Plus |
| arm_3R | 22984353..22984566 | 269..482 | 100 | -> | Plus |
| arm_3R | 22984625..22984673 | 483..531 | 100 | -> | Plus |
| arm_3R | 22984730..22984923 | 532..725 | 100 | -> | Plus |
| arm_3R | 22984987..22985410 | 726..1149 | 99 | | Plus |
BS14005.3prime Sequence
544 bp (512 high quality bases) assembled on 2006-10-13
> BS14005.3prime
ATGGTCTAGAAAGCTTTCACAGGCCATTGCTGGCCATGGTGTCCGTGATC
CACTGCACGTACTCGCCCACATTTGTGTACAGACCGGGCAGGCTAATCTG
CCCGCAGGTGACCACACCCTGGCTGACGATCCCGAACTCGACCATTTTCG
GCGCATACTCGCCCAAGTACTGGGCAGGTGCTTGGAGGGGGCCGCCGGAG
TCGCCCTTGCAGGAGTCCTGCAGGTCGCCACCACCCACGCAAAGTTGACT
GAGCGGCACTGCCCTGCGGTAGGCCTGGGAACAGGCGGATCGCGGCTGCA
GAGGCACGTTCGCCTGGAGCAACACATCCGACGACGAGCCGTTCTCCGTG
GTGCCCCAGCCGGTCACGAAGTAGGTGCTTATCTGCTCTGCCTTCTCCTT
CAGCTCATCCGTGATGGGCAGGCAAATGGGCTTGATGTGCTTCTGGAAGG
GGACGCTCCTGTTGAGCTTCAGGAGAGCTATGTCATGCATGATGTGGCGG
GCGTCGTACTTCTCATGAATCAGATGCTTCTCAATGCCCACATT
BS14005.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:15:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5896-PA | 1008 | CG5896-RA | 481..1008 | 544..17 | 2615 | 99.8 | Minus |
| CG5896-PB | 1134 | CG5896-RB | 607..1134 | 544..17 | 2615 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:15:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| grass-RB | 1317 | CG5896-RB | 698..1225 | 544..17 | 2625 | 99.8 | Minus |
| grass-RA | 1391 | CG5896-RA | 772..1299 | 544..17 | 2625 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:15:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27159265..27159689 | 441..17 | 2110 | 99.8 | Minus |
| 3R | 32079331 | 3R | 27159099..27159201 | 544..442 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:15:53 has no hits.
BS14005.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:39 Download gff for
BS14005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5896-PB | 607..1134 | 17..544 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:38:36 Download gff for
BS14005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grass-RA | 772..1299 | 17..544 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:58:46 Download gff for
BS14005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grass-RA | 772..1299 | 17..544 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:58:46 Download gff for
BS14005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27159099..27159201 | 442..544 | 100 | -> | Minus |
| 3R | 27159265..27159689 | 17..441 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:38:36 Download gff for
BS14005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22984821..22984923 | 442..544 | 100 | -> | Minus |
| arm_3R | 22984987..22985411 | 17..441 | 99 | | Minus |
BS14005.5prime Sequence
521 bp (483 high quality bases) assembled on 2006-10-13
> BS14005.5prime
GAAGTTATCAGTCGACATGATGATAGCCAGCAGCCTCGCCGTCTTATATG
GCATTGCCATCGTGTCGTCGATGGGCGTGCAATCTGCCCGAGCAGACTAC
GCCGACGACTGCACCACACCGGATGGCGATCAGGGTCAGTGCATGCCCTT
CTCCTCCTGCCGCACCATCGAGGAGCGCCTGACGGAAGCCCAGAAGGCCG
GACAGAAGGTGCCAGCCGACTACGCCAGTTACCTGCAGAAGGCACTCTGC
GGCGAGTTCAATGGAGTGCGCCACTTCTGCTGCCCCTCAGCCAACATTCA
GCACAACTCCAAGGTGATGAGCCTGTTCAAGGACGAAAACTTTGACTGCG
GCAACTTCCTCAGCCAAAGAGTGTCCAATGGCTACGAGGTGAAGCTCTCC
TCCAGACCCTGGATGGCCCTGCTCCGTTATCAGCAGTTTGGAGAGTCCAG
ATTCCCTTTGCGGCGGAGCTATGATATCCGAGCGCTACATCCTGACTGCT
GCTCACTGTGTCCACGGTCTT
BS14005.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:15:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5896-PB | 1134 | CG5896-RB | 1..504 | 17..521 | 2485 | 99.8 | Plus |
| CG5896-PA | 1008 | CG5896-RA | 1..378 | 143..521 | 1855 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:55:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| grass-RB | 1317 | CG5896-RB | 88..595 | 13..521 | 2505 | 99.6 | Plus |
| grass-RA | 1391 | CG5896-RA | 242..669 | 93..521 | 2120 | 99.8 | Plus |
| grass-RA | 1391 | CG5896-RA | 88..170 | 13..95 | 400 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:55:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27158630..27158845 | 268..484 | 1035 | 99.5 | Plus |
| 3R | 32079331 | 3R | 27158189..27158364 | 93..268 | 880 | 100 | Plus |
| 3R | 32079331 | 3R | 27158035..27158117 | 13..95 | 400 | 98.8 | Plus |
| 3R | 32079331 | 3R | 27158903..27158940 | 484..521 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:55:30 has no hits.
BS14005.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:40 Download gff for
BS14005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5896-PB | 1..504 | 17..521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:41:11 Download gff for
BS14005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grass-RB | 82..595 | 5..521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:58:35 Download gff for
BS14005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grass-RB | 82..595 | 5..521 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:58:35 Download gff for
BS14005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27158029..27158117 | 5..95 | 95 | -> | Plus |
| 3R | 27158192..27158364 | 96..268 | 100 | -> | Plus |
| 3R | 27158631..27158844 | 269..483 | 99 | -> | Plus |
| 3R | 27158903..27158940 | 484..521 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:41:11 Download gff for
BS14005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22983751..22983839 | 5..95 | 95 | -> | Plus |
| arm_3R | 22983914..22984086 | 96..268 | 100 | -> | Plus |
| arm_3R | 22984353..22984566 | 269..483 | 99 | -> | Plus |
| arm_3R | 22984625..22984662 | 484..521 | 100 | | Plus |
BS14005.pep Sequence
Translation from 16 to 1149
> BS14005.pep
MMIASSLAVLYGIAIVSSMGVQSARADYADDCTTPDGDQGQCMPFSSCRT
IEERLTEAQKAGQKVPADYASYLQKALCGEFNGVRHFCCPSANIQHNSKV
MSLFKDENFDCGNFLSQRVSNGYEVKLSSRPWMALLRYQQFGESRFLCGG
AMISERYILTAAHCVHGLQNDLYEIRLGEHRISTEEDCRQQGRKKKCAPP
VVNVGIEKHLIHEKYDARHIMHDIALLKLNRSVPFQKHIKPICLPITDEL
KEKAEQISTYFVTGWGTTENGSSSDVLLQANVPLQPRSACSQAYRRAVPL
SQLCVGGGDLQDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCG
QISLPGLYTNVGEYVQWITDTMASNGL*
BS14005.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:56:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| grass-PB | 377 | CG5896-PB | 1..377 | 1..377 | 2000 | 100 | Plus |
| grass-PA | 335 | CG5896-PA | 1..335 | 43..377 | 1786 | 100 | Plus |
| CG5909-PA | 381 | CG5909-PA | 25..380 | 32..372 | 510 | 33 | Plus |
| ea-PA | 392 | CG4920-PA | 1..392 | 1..374 | 502 | 33.7 | Plus |
| Sp7-PF | 391 | CG3066-PF | 31..389 | 32..372 | 428 | 30.7 | Plus |
