Clone BS14006 Report

Search the DGRC for BS14006

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:140
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCG11099-RA
Protein status:BS14006.pep: full length peptide match
Sequenced Size:1169

Clone Sequence Records

BS14006.complete Sequence

1169 bp assembled on 2009-12-07

GenBank Submission: KX800450

> BS14006.complete
GAAGTTATCAGTCGACATGAACAAAACGATTCTGCACTGGAGCTACCTGA
ATTTCAAGGATGTCCCGATGGATCTGTTCCTCTACGAGGATCTCGAGGAA
GTCTACCTCAAGGAGAACTTCATCTCGGTGATACCCAAATGGCTGCTGAA
CATCACCACACTGAAGTTTATTCATTTGGCTGGCAATAATCTGAGTGAAC
TGCCGGTGGACATCTATATGCTGGAGAATCTGGAGTTCCTGGACGTATCC
AACAATGAGCTCAAGGAGCTGCCCCCCACACTGGGTCTCCTGTTGAATCT
CCAGCAGCTGAATGTGTCGGGGAATCAGCTCACCGAACTACCAGTGGAGC
TAAGTGGTTTGCGCAATCTGGAGCACCTGAACATTGGCAAGAACCAATTT
CGACGCCTGCCGGTTCAGCTGAGCGAGTGCGTCCGCCTCAACGAGCTGAA
TGTGAGCGACAACGAGGCGCTTGTCCACATCCCCGAGCGCATCTCCAACC
TGCCCATGCTGCAGTCCCTCGCCGCAGATCGTTGTGCGCTCGTCTACTTG
CCGGCAGCTCTCTCCAAGTTCATGAACCATGTGCGCATCTTCCACAACAC
CGCTATCAACTACATACCCATGGTCTATGAGAGGTTCTATCAAAACTTTT
ACGACAACCGCCAGAGGAATACTCCCGTCGCCGTGCATCGCAAGGGTTTG
TTTTGGGTCCGCGAGCTGGAGACCAGCACCAGGTTGCTTCTTCCGGTTGG
CACCCGCACAGTATTTCCGGTTCCGTCGGTGGAGAACCGCGTTTCGCTCT
ACGATGACTGTCTGCACGCTCTGCAGACGCTGAACCGCTTCACGCCCGTA
TATGAGAATGTAGCCATGCATCGTCTGCTCCCAGAACCGTACATCAGTTC
CCACATCAACAATGGACCCATCGCCCGCTGCACGAACTCCACCTGCTCCA
GATGTCTCTATACCTCGTACTACTTCATGGTTGTGAAAAGGCGTGGCAGT
ACATCCAAACAGCTCTTCACCTGCAACTTCTGCACCAACCGATGTGGTCT
CCTTTGGTTGACTAGCAATGATAAGAAGTACTACCAATTGGCTTGGCGAG
TCTCAGATGATGACGACGATGATGAGGAAGAACACATGGCCAGCAACAAA
TAGAAGCTTTCTAGACCAT

BS14006.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG11099-RB 1137 CG11099-PB 1..1137 17..1153 5685 100 Plus
CG11099-RA 1137 CG11099-PA 1..1137 17..1153 5685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:08:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG11099-RB 2173 CG11099-RB 258..1395 17..1154 5690 100 Plus
CG11099-RA 2319 CG11099-RA 404..1541 17..1154 5690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20236638..20236968 17..347 1655 100 Plus
2R 25286936 2R 20237693..20238005 679..991 1565 100 Plus
2R 25286936 2R 20237026..20237211 347..532 930 100 Plus
2R 25286936 2R 20238257..20238422 989..1154 830 100 Plus
2R 25286936 2R 20237289..20237436 531..678 740 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:08:07 has no hits.

BS14006.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:02 Download gff for BS14006.complete
Subject Subject Range Query Range Percent Splice Strand
CG11099-RA 404..1534 17..1147 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:47 Download gff for BS14006.complete
Subject Subject Range Query Range Percent Splice Strand
CG11099-RA 404..1534 17..1147 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:10:12 Download gff for BS14006.complete
Subject Subject Range Query Range Percent Splice Strand
CG11099-RA 404..1534 17..1147 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:46 Download gff for BS14006.complete
Subject Subject Range Query Range Percent Splice Strand
CG11099-RA 404..1534 17..1147 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:46 Download gff for BS14006.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20237693..20238004 679..990 100 -> Plus
2R 20238259..20238415 991..1147 100   Plus
2R 20236638..20236968 17..347 100 -> Plus
2R 20237027..20237209 348..530 100 -> Plus
2R 20237289..20237436 531..678 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:47 Download gff for BS14006.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16124143..16124473 17..347 100 -> Plus
arm_2R 16124532..16124714 348..530 100 -> Plus
arm_2R 16124794..16124941 531..678 100 -> Plus
arm_2R 16125198..16125509 679..990 100 -> Plus
arm_2R 16125764..16125920 991..1147 100   Plus

BS14006.3prime Sequence

570 bp (468 high quality bases) assembled on 2006-10-13

> BS14006.3prime
ATGGTCTAGAAAGCTTCTATTTGTTGCTGGCCATGTGTTCTTCCTCATCA
TCGTCGTCATCATCTGAGACTCGCCAAGCCAATTGGTAGTACTTCTTATC
ATTGCTAGTCAACCAAAGGAGACCACATCGGTTGGTGCAGAAGTTGCAGG
TGAAGAGCTGTTTGGATGTACTGCCACGCCTTTTCACAACCATGAAGTAG
TACGAGGTATAGAGACATCTGGAGCAGGTGGAGTTCGTGCAGCGGGCGAT
GGGTCCATTGTTGATGTGGGAACTGATGTACGGTTCTGGGAGCAGACGAT
GCATGGCTACATTCTCATATACGGGCGTGAAGCGGTTCAGCGTCTGCAGA
GCGTGCAGACAGTCATCGTAGAGCGAAACGCGGTTCTCCACCGACGGAAC
CGGAAATACTGTGCGGGTGCCAACCGGAAGAAGCAACCTGGTGCTGGTCT
CCAGCTCGCGGACCCAAAACAACCCCTTGCGATGCACGGCGACGGGAGTA
TTCCTCTGGCGGTTGTCGTAAAAGTTTTGAAAGAACCTCTCATAGACCAT
GGGTATGTAGTTGATAGCGG

BS14006.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:15:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG11099-PA 1137 CG11099-RA 584..1137 570..17 2720 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG11099-RB 2173 CG11099-RB 841..1395 570..16 2745 99.6 Minus
CG11099-RA 2319 CG11099-RA 987..1541 570..16 2745 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:14:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20237693..20238005 491..179 1550 99.7 Minus
2R 25286936 2R 20238257..20238422 181..16 830 100 Minus
2R 25286936 2R 20237358..20237436 570..492 380 98.7 Minus
Blast to na_te.dros performed on 2015-02-10 15:14:14 has no hits.

BS14006.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:40 Download gff for BS14006.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11099-PA 584..1137 17..570 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:37:42 Download gff for BS14006.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11099-RA 987..1548 6..570 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:46 Download gff for BS14006.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11099-RA 987..1548 6..570 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:46 Download gff for BS14006.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20237358..20237436 492..570 98 -> Minus
2R 20237693..20238004 180..491 99 -> Minus
2R 20238259..20238429 6..179 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:37:42 Download gff for BS14006.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16124863..16124941 492..570 98 -> Minus
arm_2R 16125198..16125509 180..491 99 -> Minus
arm_2R 16125764..16125934 6..179 97   Minus

BS14006.5prime Sequence

617 bp (547 high quality bases) assembled on 2006-10-13

> BS14006.5prime
GAAGTTATCAGTCGACATGAACAAAACGATTCTGCACTGGAGCTACCTGA
ATTTCAAGGATGTCCCGATGGATCTGTTCCTCTACGAGGATCTCGAGGAA
GTCTACCTCAAGGAGAACTTCATCTCGGTGATACCCAAATGGCTGCTGAA
CATCACCACACTGAAGTTTATTCATTTGGCTGGCAATAATCTGAGTGAAC
TGCCGGTGGACATCTATATGCTGGAGAATCTGGAGTTCCTGGACGTATCC
AACAATGAGCTCAAGGAGCTGCCCCCCACACTGGGTCTCCTGTTGAATCT
CCAGCAGCTGAATGTGTCGGGGAATCAGCTCACCGAACTACCAGTGGAGC
TAAGTGGTTTGCGCAATCTGGAGCACCTGAACATTGGCAAGAACCAATTT
CGACGCCTGCCGGTTCAGCTGAGCGAGTGCGTCCGCCTCAACGAGCTGAA
TGTGAGCGACAACGAGGCGCTTGTCCACATCCCCGAGCGCATCTCCAACC
TGCCCATGCTGCAGTCCCTCGCCGCAGATCGTTGTGCGCTCGTCTACTTT
GCGGCAGCTCTCTCCAAGTTCATGAACCATGTGCGCATCTTCAACAACAC
CGCTATCAACTACATAC

BS14006.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:15:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG11099-PA 1137 CG11099-RA 1..601 17..617 2930 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG11099-RB 2173 CG11099-RB 258..858 17..617 2960 99.5 Plus
CG11099-RA 2319 CG11099-RA 404..1004 17..617 2960 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:36:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20236638..20236968 17..347 1655 100 Plus
2R 25286936 2R 20237026..20237211 347..532 930 100 Plus
2R 25286936 2R 20237289..20237375 531..617 390 96.6 Plus
Blast to na_te.dros performed on 2015-02-12 04:36:52 has no hits.

BS14006.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:40 Download gff for BS14006.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11099-PA 1..601 17..617 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:16:45 Download gff for BS14006.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11099-RA 394..1004 6..617 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:25:24 Download gff for BS14006.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11099-RA 394..1004 6..617 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:25:24 Download gff for BS14006.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20236628..20236968 6..347 99 -> Plus
2R 20237027..20237209 348..530 100 -> Plus
2R 20237289..20237375 531..617 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:16:45 Download gff for BS14006.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16124133..16124473 6..347 99 -> Plus
arm_2R 16124532..16124714 348..530 100 -> Plus
arm_2R 16124794..16124880 531..617 96   Plus

BS14006.pep Sequence

Translation from 16 to 1152

> BS14006.pep
MNKTILHWSYLNFKDVPMDLFLYEDLEEVYLKENFISVIPKWLLNITTLK
FIHLAGNNLSELPVDIYMLENLEFLDVSNNELKELPPTLGLLLNLQQLNV
SGNQLTELPVELSGLRNLEHLNIGKNQFRRLPVQLSECVRLNELNVSDNE
ALVHIPERISNLPMLQSLAADRCALVYLPAALSKFMNHVRIFHNTAINYI
PMVYERFYQNFYDNRQRNTPVAVHRKGLFWVRELETSTRLLLPVGTRTVF
PVPSVENRVSLYDDCLHALQTLNRFTPVYENVAMHRLLPEPYISSHINNG
PIARCTNSTCSRCLYTSYYFMVVKRRGSTSKQLFTCNFCTNRCGLLWLTS
NDKKYYQLAWRVSDDDDDDEEEHMASNK*

BS14006.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG11099-PB 378 CG11099-PB 1..378 1..378 2002 100 Plus
CG11099-PA 378 CG11099-PA 1..378 1..378 2002 100 Plus
scrib-PC 1247 CG43398-PC 130..375 2..243 257 29 Plus
scrib-PI 1711 CG43398-PI 130..375 2..243 257 29 Plus
scrib-PP 1729 CG43398-PP 130..375 2..243 257 29 Plus
scrib-PC 1247 CG43398-PC 22..262 10..245 219 29.1 Plus
scrib-PI 1711 CG43398-PI 22..262 10..245 219 29.1 Plus
scrib-PC 1247 CG43398-PC 97..265 15..184 204 32.4 Plus
scrib-PI 1711 CG43398-PI 97..265 15..184 204 32.4 Plus
scrib-PC 1247 CG43398-PC 121..291 16..187 203 32 Plus
scrib-PI 1711 CG43398-PI 121..291 16..187 203 32 Plus
scrib-PC 1247 CG43398-PC 290..396 24..131 168 38.9 Plus
scrib-PI 1711 CG43398-PI 290..396 24..131 168 38.9 Plus