Clone Sequence Records
BS14006.complete Sequence
1169 bp assembled on 2009-12-07
GenBank Submission: KX800450
> BS14006.complete
GAAGTTATCAGTCGACATGAACAAAACGATTCTGCACTGGAGCTACCTGA
ATTTCAAGGATGTCCCGATGGATCTGTTCCTCTACGAGGATCTCGAGGAA
GTCTACCTCAAGGAGAACTTCATCTCGGTGATACCCAAATGGCTGCTGAA
CATCACCACACTGAAGTTTATTCATTTGGCTGGCAATAATCTGAGTGAAC
TGCCGGTGGACATCTATATGCTGGAGAATCTGGAGTTCCTGGACGTATCC
AACAATGAGCTCAAGGAGCTGCCCCCCACACTGGGTCTCCTGTTGAATCT
CCAGCAGCTGAATGTGTCGGGGAATCAGCTCACCGAACTACCAGTGGAGC
TAAGTGGTTTGCGCAATCTGGAGCACCTGAACATTGGCAAGAACCAATTT
CGACGCCTGCCGGTTCAGCTGAGCGAGTGCGTCCGCCTCAACGAGCTGAA
TGTGAGCGACAACGAGGCGCTTGTCCACATCCCCGAGCGCATCTCCAACC
TGCCCATGCTGCAGTCCCTCGCCGCAGATCGTTGTGCGCTCGTCTACTTG
CCGGCAGCTCTCTCCAAGTTCATGAACCATGTGCGCATCTTCCACAACAC
CGCTATCAACTACATACCCATGGTCTATGAGAGGTTCTATCAAAACTTTT
ACGACAACCGCCAGAGGAATACTCCCGTCGCCGTGCATCGCAAGGGTTTG
TTTTGGGTCCGCGAGCTGGAGACCAGCACCAGGTTGCTTCTTCCGGTTGG
CACCCGCACAGTATTTCCGGTTCCGTCGGTGGAGAACCGCGTTTCGCTCT
ACGATGACTGTCTGCACGCTCTGCAGACGCTGAACCGCTTCACGCCCGTA
TATGAGAATGTAGCCATGCATCGTCTGCTCCCAGAACCGTACATCAGTTC
CCACATCAACAATGGACCCATCGCCCGCTGCACGAACTCCACCTGCTCCA
GATGTCTCTATACCTCGTACTACTTCATGGTTGTGAAAAGGCGTGGCAGT
ACATCCAAACAGCTCTTCACCTGCAACTTCTGCACCAACCGATGTGGTCT
CCTTTGGTTGACTAGCAATGATAAGAAGTACTACCAATTGGCTTGGCGAG
TCTCAGATGATGACGACGATGATGAGGAAGAACACATGGCCAGCAACAAA
TAGAAGCTTTCTAGACCAT
BS14006.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:08:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11099-RB | 1137 | CG11099-PB | 1..1137 | 17..1153 | 5685 | 100 | Plus |
CG11099-RA | 1137 | CG11099-PA | 1..1137 | 17..1153 | 5685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:08:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11099-RB | 2173 | CG11099-RB | 258..1395 | 17..1154 | 5690 | 100 | Plus |
CG11099-RA | 2319 | CG11099-RA | 404..1541 | 17..1154 | 5690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:08:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20236638..20236968 | 17..347 | 1655 | 100 | Plus |
2R | 25286936 | 2R | 20237693..20238005 | 679..991 | 1565 | 100 | Plus |
2R | 25286936 | 2R | 20237026..20237211 | 347..532 | 930 | 100 | Plus |
2R | 25286936 | 2R | 20238257..20238422 | 989..1154 | 830 | 100 | Plus |
2R | 25286936 | 2R | 20237289..20237436 | 531..678 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:08:07 has no hits.
BS14006.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:02 Download gff for
BS14006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11099-RA | 404..1534 | 17..1147 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:47 Download gff for
BS14006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11099-RA | 404..1534 | 17..1147 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:10:12 Download gff for
BS14006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11099-RA | 404..1534 | 17..1147 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:46 Download gff for
BS14006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11099-RA | 404..1534 | 17..1147 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:46 Download gff for
BS14006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20237693..20238004 | 679..990 | 100 | -> | Plus |
2R | 20238259..20238415 | 991..1147 | 100 | | Plus |
2R | 20236638..20236968 | 17..347 | 100 | -> | Plus |
2R | 20237027..20237209 | 348..530 | 100 | -> | Plus |
2R | 20237289..20237436 | 531..678 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:47 Download gff for
BS14006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16124143..16124473 | 17..347 | 100 | -> | Plus |
arm_2R | 16124532..16124714 | 348..530 | 100 | -> | Plus |
arm_2R | 16124794..16124941 | 531..678 | 100 | -> | Plus |
arm_2R | 16125198..16125509 | 679..990 | 100 | -> | Plus |
arm_2R | 16125764..16125920 | 991..1147 | 100 | | Plus |
BS14006.3prime Sequence
570 bp (468 high quality bases) assembled on 2006-10-13
> BS14006.3prime
ATGGTCTAGAAAGCTTCTATTTGTTGCTGGCCATGTGTTCTTCCTCATCA
TCGTCGTCATCATCTGAGACTCGCCAAGCCAATTGGTAGTACTTCTTATC
ATTGCTAGTCAACCAAAGGAGACCACATCGGTTGGTGCAGAAGTTGCAGG
TGAAGAGCTGTTTGGATGTACTGCCACGCCTTTTCACAACCATGAAGTAG
TACGAGGTATAGAGACATCTGGAGCAGGTGGAGTTCGTGCAGCGGGCGAT
GGGTCCATTGTTGATGTGGGAACTGATGTACGGTTCTGGGAGCAGACGAT
GCATGGCTACATTCTCATATACGGGCGTGAAGCGGTTCAGCGTCTGCAGA
GCGTGCAGACAGTCATCGTAGAGCGAAACGCGGTTCTCCACCGACGGAAC
CGGAAATACTGTGCGGGTGCCAACCGGAAGAAGCAACCTGGTGCTGGTCT
CCAGCTCGCGGACCCAAAACAACCCCTTGCGATGCACGGCGACGGGAGTA
TTCCTCTGGCGGTTGTCGTAAAAGTTTTGAAAGAACCTCTCATAGACCAT
GGGTATGTAGTTGATAGCGG
BS14006.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:15:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11099-PA | 1137 | CG11099-RA | 584..1137 | 570..17 | 2720 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:14:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11099-RB | 2173 | CG11099-RB | 841..1395 | 570..16 | 2745 | 99.6 | Minus |
CG11099-RA | 2319 | CG11099-RA | 987..1541 | 570..16 | 2745 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:14:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20237693..20238005 | 491..179 | 1550 | 99.7 | Minus |
2R | 25286936 | 2R | 20238257..20238422 | 181..16 | 830 | 100 | Minus |
2R | 25286936 | 2R | 20237358..20237436 | 570..492 | 380 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:14:14 has no hits.
BS14006.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:40 Download gff for
BS14006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11099-PA | 584..1137 | 17..570 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:37:42 Download gff for
BS14006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11099-RA | 987..1548 | 6..570 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:46 Download gff for
BS14006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11099-RA | 987..1548 | 6..570 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:46 Download gff for
BS14006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20237358..20237436 | 492..570 | 98 | -> | Minus |
2R | 20237693..20238004 | 180..491 | 99 | -> | Minus |
2R | 20238259..20238429 | 6..179 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:37:42 Download gff for
BS14006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16124863..16124941 | 492..570 | 98 | -> | Minus |
arm_2R | 16125198..16125509 | 180..491 | 99 | -> | Minus |
arm_2R | 16125764..16125934 | 6..179 | 97 | | Minus |
BS14006.5prime Sequence
617 bp (547 high quality bases) assembled on 2006-10-13
> BS14006.5prime
GAAGTTATCAGTCGACATGAACAAAACGATTCTGCACTGGAGCTACCTGA
ATTTCAAGGATGTCCCGATGGATCTGTTCCTCTACGAGGATCTCGAGGAA
GTCTACCTCAAGGAGAACTTCATCTCGGTGATACCCAAATGGCTGCTGAA
CATCACCACACTGAAGTTTATTCATTTGGCTGGCAATAATCTGAGTGAAC
TGCCGGTGGACATCTATATGCTGGAGAATCTGGAGTTCCTGGACGTATCC
AACAATGAGCTCAAGGAGCTGCCCCCCACACTGGGTCTCCTGTTGAATCT
CCAGCAGCTGAATGTGTCGGGGAATCAGCTCACCGAACTACCAGTGGAGC
TAAGTGGTTTGCGCAATCTGGAGCACCTGAACATTGGCAAGAACCAATTT
CGACGCCTGCCGGTTCAGCTGAGCGAGTGCGTCCGCCTCAACGAGCTGAA
TGTGAGCGACAACGAGGCGCTTGTCCACATCCCCGAGCGCATCTCCAACC
TGCCCATGCTGCAGTCCCTCGCCGCAGATCGTTGTGCGCTCGTCTACTTT
GCGGCAGCTCTCTCCAAGTTCATGAACCATGTGCGCATCTTCAACAACAC
CGCTATCAACTACATAC
BS14006.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:15:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11099-PA | 1137 | CG11099-RA | 1..601 | 17..617 | 2930 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:36:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11099-RB | 2173 | CG11099-RB | 258..858 | 17..617 | 2960 | 99.5 | Plus |
CG11099-RA | 2319 | CG11099-RA | 404..1004 | 17..617 | 2960 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:36:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20236638..20236968 | 17..347 | 1655 | 100 | Plus |
2R | 25286936 | 2R | 20237026..20237211 | 347..532 | 930 | 100 | Plus |
2R | 25286936 | 2R | 20237289..20237375 | 531..617 | 390 | 96.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:36:52 has no hits.
BS14006.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:40 Download gff for
BS14006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11099-PA | 1..601 | 17..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:16:45 Download gff for
BS14006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11099-RA | 394..1004 | 6..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:25:24 Download gff for
BS14006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11099-RA | 394..1004 | 6..617 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:25:24 Download gff for
BS14006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20236628..20236968 | 6..347 | 99 | -> | Plus |
2R | 20237027..20237209 | 348..530 | 100 | -> | Plus |
2R | 20237289..20237375 | 531..617 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:16:45 Download gff for
BS14006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16124133..16124473 | 6..347 | 99 | -> | Plus |
arm_2R | 16124532..16124714 | 348..530 | 100 | -> | Plus |
arm_2R | 16124794..16124880 | 531..617 | 96 | | Plus |
BS14006.pep Sequence
Translation from 16 to 1152
> BS14006.pep
MNKTILHWSYLNFKDVPMDLFLYEDLEEVYLKENFISVIPKWLLNITTLK
FIHLAGNNLSELPVDIYMLENLEFLDVSNNELKELPPTLGLLLNLQQLNV
SGNQLTELPVELSGLRNLEHLNIGKNQFRRLPVQLSECVRLNELNVSDNE
ALVHIPERISNLPMLQSLAADRCALVYLPAALSKFMNHVRIFHNTAINYI
PMVYERFYQNFYDNRQRNTPVAVHRKGLFWVRELETSTRLLLPVGTRTVF
PVPSVENRVSLYDDCLHALQTLNRFTPVYENVAMHRLLPEPYISSHINNG
PIARCTNSTCSRCLYTSYYFMVVKRRGSTSKQLFTCNFCTNRCGLLWLTS
NDKKYYQLAWRVSDDDDDDEEEHMASNK*
BS14006.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:06:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11099-PB | 378 | CG11099-PB | 1..378 | 1..378 | 2002 | 100 | Plus |
CG11099-PA | 378 | CG11099-PA | 1..378 | 1..378 | 2002 | 100 | Plus |
scrib-PC | 1247 | CG43398-PC | 130..375 | 2..243 | 257 | 29 | Plus |
scrib-PI | 1711 | CG43398-PI | 130..375 | 2..243 | 257 | 29 | Plus |
scrib-PP | 1729 | CG43398-PP | 130..375 | 2..243 | 257 | 29 | Plus |
scrib-PC | 1247 | CG43398-PC | 22..262 | 10..245 | 219 | 29.1 | Plus |
scrib-PI | 1711 | CG43398-PI | 22..262 | 10..245 | 219 | 29.1 | Plus |
scrib-PC | 1247 | CG43398-PC | 97..265 | 15..184 | 204 | 32.4 | Plus |
scrib-PI | 1711 | CG43398-PI | 97..265 | 15..184 | 204 | 32.4 | Plus |
scrib-PC | 1247 | CG43398-PC | 121..291 | 16..187 | 203 | 32 | Plus |
scrib-PI | 1711 | CG43398-PI | 121..291 | 16..187 | 203 | 32 | Plus |
scrib-PC | 1247 | CG43398-PC | 290..396 | 24..131 | 168 | 38.9 | Plus |
scrib-PI | 1711 | CG43398-PI | 290..396 | 24..131 | 168 | 38.9 | Plus |