Clone Sequence Records
BS14007.3prime Sequence
336 bp (336 high quality bases) assembled on 2006-10-13
> BS14007.3prime
ATGGTCTAGAAAGCTTCTAAAACCTAATGGCAAAGTCCTTGTAGTCCAGT
CGGCTGAGATTGCCCTGGTTCCGGACCTCACAGCGATCGATTTGGCAGCC
GGGTGAGCCCTCAGTGGACAGCCAGGTGATCATCTTGTCCACCTCCTCCT
TGGGCCCCTGCATCTTGCCCACAATGGTGCCCTGTTTGCTGTTCTTCACC
CAGCCAGTGATTCCCGCCTTGGTGCAGCGATCGCGGGTGTCTTTCGTGAG
ATTCAGGCCTTGTACATGTCCATAGACCTCGAAATCCAGCGTCACCAGCA
GTCGGATATCCGGAATGCCCATGTCGACTGATAACT
BS14007.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14022-PA | 306 | CG14022-RA | 1..306 | 322..17 | 1530 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:29:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14022-RB | 617 | CG14022-RB | 207..518 | 327..16 | 1545 | 99.7 | Minus |
CG14022-RA | 652 | CG14022-RA | 242..553 | 327..16 | 1545 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:29:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5328252..5328381 | 131..260 | 650 | 100 | Plus |
2L | 23513712 | 2L | 5328074..5328189 | 16..131 | 580 | 100 | Plus |
2L | 23513712 | 2L | 5328569..5328638 | 258..327 | 335 | 98.6 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:29:25 has no hits.
BS14007.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:41 Download gff for
BS14007.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14022-PA | 1..306 | 17..322 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:40 Download gff for
BS14007.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14022-RA | 237..553 | 16..332 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:15:50 Download gff for
BS14007.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14022-RA | 237..553 | 16..332 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:15:50 Download gff for
BS14007.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5328074..5328189 | 16..131 | 100 | <- | Plus |
2L | 5328253..5328379 | 132..258 | 100 | <- | Plus |
2L | 5328570..5328643 | 259..332 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:40 Download gff for
BS14007.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5328570..5328643 | 259..332 | 96 | | Plus |
arm_2L | 5328074..5328189 | 16..131 | 100 | <- | Plus |
arm_2L | 5328253..5328379 | 132..258 | 100 | <- | Plus |
BS14007.5prime Sequence
336 bp (336 high quality bases) assembled on 2006-10-13
> BS14007.5prime
GAAGTTATCAGTCGACATGGGCATTCCGGATATCCGACTGCTGGTGACGC
TGGATTTCGAGGTCTATGGACATGTACAAGGCCTGAATCTCACGAAAGAC
ACCCGCGATCGCTGCACCAAGGCGGGAATCACTGGCTGGGTGAAGAACAG
CAAACAGGGCACCATTGTGGGCAAGATGCAGGGGCCCAAGGAGGAGGTGG
ACAAGATGATCACCTGGCTGTCCACTGAGGGCTCACCCGGCTGCCAAATC
GATCGCTGTGAGGTCCGGAACCAGGGCAATCTCAGCCGACTGGACTACAA
GGACTTTGCCATTAGGTTTTAGAAGCTTTCTAGACC
BS14007.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14022-PA | 306 | CG14022-RA | 1..306 | 17..322 | 1530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:12:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14022-RB | 617 | CG14022-RB | 207..518 | 12..323 | 1545 | 99.7 | Plus |
CG14022-RA | 652 | CG14022-RA | 242..553 | 12..323 | 1545 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:12:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5328252..5328381 | 208..79 | 650 | 100 | Minus |
2L | 23513712 | 2L | 5328074..5328189 | 323..208 | 580 | 100 | Minus |
2L | 23513712 | 2L | 5328569..5328638 | 81..12 | 335 | 98.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:12:12 has no hits.
BS14007.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:41 Download gff for
BS14007.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14022-PA | 1..306 | 17..322 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:03:23 Download gff for
BS14007.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14022-RA | 237..553 | 7..323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:23:27 Download gff for
BS14007.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14022-RA | 237..553 | 7..323 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:23:27 Download gff for
BS14007.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5328074..5328189 | 208..323 | 100 | <- | Minus |
2L | 5328253..5328379 | 81..207 | 100 | <- | Minus |
2L | 5328570..5328643 | 7..80 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:03:23 Download gff for
BS14007.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5328074..5328189 | 208..323 | 100 | <- | Minus |
arm_2L | 5328253..5328379 | 81..207 | 100 | <- | Minus |
arm_2L | 5328570..5328643 | 7..80 | 96 | | Minus |
BS14007.complete Sequence
338 bp assembled on 2006-11-01
GenBank Submission: FJ637582
> BS14007.complete
GAAGTTATCAGTCGACATGGGCATTCCGGATATCCGACTGCTGGTGACGC
TGGATTTCGAGGTCTATGGACATGTACAAGGCCTGAATCTCACGAAAGAC
ACCCGCGATCGCTGCACCAAGGCGGGAATCACTGGCTGGGTGAAGAACAG
CAAACAGGGCACCATTGTGGGCAAGATGCAGGGGCCCAAGGAGGAGGTGG
ACAAGATGATCACCTGGCTGTCCACTGAGGGCTCACCCGGCTGCCAAATC
GATCGCTGTGAGGTCCGGAACCAGGGCAATCTCAGCCGACTGGACTACAA
GGACTTTGCCATTAGGTTTTAGAAGCTTTCTAGACCAT
BS14007.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:12:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14022-RB | 306 | CG14022-PB | 1..306 | 17..322 | 1530 | 100 | Plus |
CG14022-RA | 306 | CG14022-PA | 1..306 | 17..322 | 1530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14022-RB | 617 | CG14022-RB | 207..518 | 12..323 | 1545 | 99.7 | Plus |
CG14022-RA | 652 | CG14022-RA | 242..553 | 12..323 | 1545 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:12:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5328252..5328381 | 208..79 | 650 | 100 | Minus |
2L | 23513712 | 2L | 5328074..5328189 | 323..208 | 580 | 100 | Minus |
2L | 23513712 | 2L | 5328569..5328638 | 81..12 | 335 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:12:22 has no hits.
BS14007.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:01 Download gff for
BS14007.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14022-RA | 1..306 | 17..322 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:51 Download gff for
BS14007.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14022-RA | 228..544 | 7..323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:57 Download gff for
BS14007.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14022-RA | 247..552 | 17..322 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:01 Download gff for
BS14007.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14022-RA | 228..544 | 7..323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:20:45 Download gff for
BS14007.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14022-RA | 247..552 | 17..322 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:20:45 Download gff for
BS14007.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5328075..5328189 | 208..322 | 100 | <- | Minus |
2L | 5328253..5328379 | 81..207 | 100 | <- | Minus |
2L | 5328570..5328633 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:57 Download gff for
BS14007.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5328253..5328379 | 81..207 | 100 | <- | Minus |
arm_2L | 5328570..5328633 | 17..80 | 100 | | Minus |
arm_2L | 5328075..5328189 | 208..322 | 100 | <- | Minus |
BS14007.pep Sequence
Translation from 16 to 321
> BS14007.pep
MGIPDIRLLVTLDFEVYGHVQGLNLTKDTRDRCTKAGITGWVKNSKQGTI
VGKMQGPKEEVDKMITWLSTEGSPGCQIDRCEVRNQGNLSRLDYKDFAIR
F*
BS14007.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:31:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14022-PB | 101 | CG14022-PB | 1..101 | 1..101 | 540 | 100 | Plus |
CG14022-PA | 101 | CG14022-PA | 1..101 | 1..101 | 540 | 100 | Plus |
Acyp-PB | 120 | CG16870-PB | 10..97 | 13..100 | 170 | 37.5 | Plus |
Acyp-PA | 120 | CG16870-PA | 10..97 | 13..100 | 170 | 37.5 | Plus |
CG34161-PC | 125 | CG34161-PC | 33..124 | 9..100 | 168 | 35.9 | Plus |