Clone BS14007 Report

Search the DGRC for BS14007

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:140
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG14022-RA
Protein status:BS14007.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14007.3prime Sequence

336 bp (336 high quality bases) assembled on 2006-10-13

> BS14007.3prime
ATGGTCTAGAAAGCTTCTAAAACCTAATGGCAAAGTCCTTGTAGTCCAGT
CGGCTGAGATTGCCCTGGTTCCGGACCTCACAGCGATCGATTTGGCAGCC
GGGTGAGCCCTCAGTGGACAGCCAGGTGATCATCTTGTCCACCTCCTCCT
TGGGCCCCTGCATCTTGCCCACAATGGTGCCCTGTTTGCTGTTCTTCACC
CAGCCAGTGATTCCCGCCTTGGTGCAGCGATCGCGGGTGTCTTTCGTGAG
ATTCAGGCCTTGTACATGTCCATAGACCTCGAAATCCAGCGTCACCAGCA
GTCGGATATCCGGAATGCCCATGTCGACTGATAACT

BS14007.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG14022-PA 306 CG14022-RA 1..306 322..17 1530 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:29:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG14022-RB 617 CG14022-RB 207..518 327..16 1545 99.7 Minus
CG14022-RA 652 CG14022-RA 242..553 327..16 1545 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:29:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5328252..5328381 131..260 650 100 Plus
2L 23513712 2L 5328074..5328189 16..131 580 100 Plus
2L 23513712 2L 5328569..5328638 258..327 335 98.6 Plus
Blast to na_te.dros performed on 2015-02-02 18:29:25 has no hits.

BS14007.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:41 Download gff for BS14007.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14022-PA 1..306 17..322 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:40 Download gff for BS14007.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14022-RA 237..553 16..332 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:15:50 Download gff for BS14007.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14022-RA 237..553 16..332 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:15:50 Download gff for BS14007.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5328074..5328189 16..131 100 <- Plus
2L 5328253..5328379 132..258 100 <- Plus
2L 5328570..5328643 259..332 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:40 Download gff for BS14007.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5328570..5328643 259..332 96   Plus
arm_2L 5328074..5328189 16..131 100 <- Plus
arm_2L 5328253..5328379 132..258 100 <- Plus

BS14007.5prime Sequence

336 bp (336 high quality bases) assembled on 2006-10-13

> BS14007.5prime
GAAGTTATCAGTCGACATGGGCATTCCGGATATCCGACTGCTGGTGACGC
TGGATTTCGAGGTCTATGGACATGTACAAGGCCTGAATCTCACGAAAGAC
ACCCGCGATCGCTGCACCAAGGCGGGAATCACTGGCTGGGTGAAGAACAG
CAAACAGGGCACCATTGTGGGCAAGATGCAGGGGCCCAAGGAGGAGGTGG
ACAAGATGATCACCTGGCTGTCCACTGAGGGCTCACCCGGCTGCCAAATC
GATCGCTGTGAGGTCCGGAACCAGGGCAATCTCAGCCGACTGGACTACAA
GGACTTTGCCATTAGGTTTTAGAAGCTTTCTAGACC

BS14007.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG14022-PA 306 CG14022-RA 1..306 17..322 1530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG14022-RB 617 CG14022-RB 207..518 12..323 1545 99.7 Plus
CG14022-RA 652 CG14022-RA 242..553 12..323 1545 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5328252..5328381 208..79 650 100 Minus
2L 23513712 2L 5328074..5328189 323..208 580 100 Minus
2L 23513712 2L 5328569..5328638 81..12 335 98.6 Minus
Blast to na_te.dros performed on 2015-02-11 09:12:12 has no hits.

BS14007.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:41 Download gff for BS14007.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14022-PA 1..306 17..322 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:03:23 Download gff for BS14007.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14022-RA 237..553 7..323 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:23:27 Download gff for BS14007.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14022-RA 237..553 7..323 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:23:27 Download gff for BS14007.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5328074..5328189 208..323 100 <- Minus
2L 5328253..5328379 81..207 100 <- Minus
2L 5328570..5328643 7..80 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:03:23 Download gff for BS14007.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5328074..5328189 208..323 100 <- Minus
arm_2L 5328253..5328379 81..207 100 <- Minus
arm_2L 5328570..5328643 7..80 96   Minus

BS14007.complete Sequence

338 bp assembled on 2006-11-01

GenBank Submission: FJ637582

> BS14007.complete
GAAGTTATCAGTCGACATGGGCATTCCGGATATCCGACTGCTGGTGACGC
TGGATTTCGAGGTCTATGGACATGTACAAGGCCTGAATCTCACGAAAGAC
ACCCGCGATCGCTGCACCAAGGCGGGAATCACTGGCTGGGTGAAGAACAG
CAAACAGGGCACCATTGTGGGCAAGATGCAGGGGCCCAAGGAGGAGGTGG
ACAAGATGATCACCTGGCTGTCCACTGAGGGCTCACCCGGCTGCCAAATC
GATCGCTGTGAGGTCCGGAACCAGGGCAATCTCAGCCGACTGGACTACAA
GGACTTTGCCATTAGGTTTTAGAAGCTTTCTAGACCAT

BS14007.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:12:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG14022-RB 306 CG14022-PB 1..306 17..322 1530 100 Plus
CG14022-RA 306 CG14022-PA 1..306 17..322 1530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG14022-RB 617 CG14022-RB 207..518 12..323 1545 99.7 Plus
CG14022-RA 652 CG14022-RA 242..553 12..323 1545 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:12:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5328252..5328381 208..79 650 100 Minus
2L 23513712 2L 5328074..5328189 323..208 580 100 Minus
2L 23513712 2L 5328569..5328638 81..12 335 98.6 Minus
Blast to na_te.dros performed on 2014-11-27 01:12:22 has no hits.

BS14007.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:01 Download gff for BS14007.complete
Subject Subject Range Query Range Percent Splice Strand
CG14022-RA 1..306 17..322 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:51 Download gff for BS14007.complete
Subject Subject Range Query Range Percent Splice Strand
CG14022-RA 228..544 7..323 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:57 Download gff for BS14007.complete
Subject Subject Range Query Range Percent Splice Strand
CG14022-RA 247..552 17..322 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:01 Download gff for BS14007.complete
Subject Subject Range Query Range Percent Splice Strand
CG14022-RA 228..544 7..323 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:20:45 Download gff for BS14007.complete
Subject Subject Range Query Range Percent Splice Strand
CG14022-RA 247..552 17..322 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:20:45 Download gff for BS14007.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5328075..5328189 208..322 100 <- Minus
2L 5328253..5328379 81..207 100 <- Minus
2L 5328570..5328633 17..80 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:57 Download gff for BS14007.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5328253..5328379 81..207 100 <- Minus
arm_2L 5328570..5328633 17..80 100   Minus
arm_2L 5328075..5328189 208..322 100 <- Minus

BS14007.pep Sequence

Translation from 16 to 321

> BS14007.pep
MGIPDIRLLVTLDFEVYGHVQGLNLTKDTRDRCTKAGITGWVKNSKQGTI
VGKMQGPKEEVDKMITWLSTEGSPGCQIDRCEVRNQGNLSRLDYKDFAIR
F*

BS14007.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:31:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG14022-PB 101 CG14022-PB 1..101 1..101 540 100 Plus
CG14022-PA 101 CG14022-PA 1..101 1..101 540 100 Plus
Acyp-PB 120 CG16870-PB 10..97 13..100 170 37.5 Plus
Acyp-PA 120 CG16870-PA 10..97 13..100 170 37.5 Plus
CG34161-PC 125 CG34161-PC 33..124 9..100 168 35.9 Plus