Clone BS14010 Report

Search the DGRC for BS14010

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:140
Well:10
Vector:pDNR-Dual
Associated Gene/Transcriptsn-RA
Protein status:BS14010.pep: gold
Sequenced Size:1727

Clone Sequence Records

BS14010.3prime Sequence

470 bp (466 high quality bases) assembled on 2006-10-13

> BS14010.3prime
ATGGTCTAGAAAGCTTCTAGAACTCCCACTGTGTGGCCGAATCGGTTCCA
TCATCCAGCAGCTTGAACGCCCCGTTCTTCGTAGCGCCCAGGTACTTGCC
CTGCTGCGATCTTATGCAGATCCTGGTCGGCTCGCGAAGCTCGAGGAAGA
AACCATCGCTGGGCGCATCGGCATCCACCGAGATGCTTTCGCCCTCGATG
CGCCAGTATTTGCCGCTATGCGCCTTCAGATGCACCAGGCCCTTCTGGGC
CCGCTCCACCAGAATCGTTTCATAGGTGGCCTTATTGCACTCGAGCTTCA
GGTTGCCGGGCGTGCGATAGCCCACGAATCCCTGCTCGCACTTCAGTACA
AGAATTGGTCTATTAATCAAGTAGAAATAGAACTTGGCTATCTCCTCGAT
CGACTCCGAGGTGGCAAACAGATGACCAGAGCGCTTGGTGGCCAAGAACT
TGCCGTTGTTAGCCCGGAAC

BS14010.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:16:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG32858-PC 1695 sn-RC 1242..1695 470..17 2270 100 Minus
CG32858-PA 1539 sn-RA 1086..1539 470..17 2270 100 Minus
CG32858-PB 1539 sn-RB 1086..1539 470..17 2270 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:14:43
Subject Length Description Subject Range Query Range Score Percent Strand
sn-RG 2322 CG32858-RG 1311..1764 470..17 2270 100 Minus
sn-RE 2451 CG32858-RE 1440..1893 470..17 2270 100 Minus
sn-RB 3358 CG32858-RB 1831..2284 470..17 2270 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:14:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7985100..7985356 367..111 1270 99.6 Minus
X 23542271 X 7984929..7985039 470..360 555 100 Minus
X 23542271 X 7985432..7985527 112..17 480 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:14:40 has no hits.

BS14010.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:42 Download gff for BS14010.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32858-PB 1086..1539 17..470 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:37:47 Download gff for BS14010.3prime
Subject Subject Range Query Range Percent Splice Strand
sn-RB 1831..2287 13..470 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:49 Download gff for BS14010.3prime
Subject Subject Range Query Range Percent Splice Strand
sn-RB 1831..2287 13..470 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:49 Download gff for BS14010.3prime
Subject Subject Range Query Range Percent Splice Strand
X 7984929..7985039 360..470 100 -> Minus
X 7985108..7985356 111..359 100 -> Minus
X 7985434..7985530 13..110 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:37:47 Download gff for BS14010.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7878962..7879072 360..470 100 -> Minus
arm_X 7879141..7879389 111..359 100 -> Minus
arm_X 7879467..7879563 13..110 97   Minus

BS14010.5prime Sequence

576 bp (517 high quality bases) assembled on 2006-10-13

> BS14010.5prime
GAAGTTATCAGTCGACATGACGCGAATCATTACGTCCGGATTGTCCTGGA
ACACCTCTTCGAATGCCTGCCAAAGCAAGGAGGAAAAAAATAAGAACACC
ATTAAGTTCGATCTTCCTTACGCAAAGAAGCCGGATTCCGGAGACAGCCT
CAAGATTGCTCCCATCAGCACCATGAACGGCCAGGGCTGCGAGCTGGGCC
ACAGCAATGGCGACATCATCTCACAGAATCAACAGAAGGGATGGTGGACC
ATCGGCCTGATCAACGGCCAGCACAAGTACATGACCGCGGAGACCTTTGG
GTTCAAGCTCAACGCCAATGGCGCCAGTCTGAAGAAGAAGCAACTGTGGA
CGCTGGAACCCTCGAACACCGGTGAAAGTATTATCTACTTACGATCTCAT
CTGAACAAGTACCTTTCGGTCGATCAGTTTGGCAACGTGCTGTGCGAGAG
CGATGAGAGGGACGCGGGCAGCCGCTTCCAGATCAGCATCAGTGAGGACG
GCAGCGGACGTTGGGCGCTGAAGAACGAGTCGCGCGGCTACTTTCTGGGC
GGCACTCCGGACAAACTGGTCTGCAC

BS14010.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:16:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG32858-PC 1695 sn-RC 1..560 17..576 2800 100 Plus
CG32858-PA 1539 sn-RA 1..404 173..576 2020 100 Plus
CG32858-PB 1539 sn-RB 1..404 173..576 2020 100 Plus
CG2212-PA 4278 sws-RA 831..884 70..17 270 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
sn-RG 2322 CG32858-RG 70..629 17..576 2800 100 Plus
sn-RB 3358 CG32858-RB 668..1149 95..576 2410 100 Plus
sn-RA 3101 CG32858-RA 411..892 95..576 2410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:05:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7982371..7982653 97..379 1415 100 Plus
X 23542271 X 7983988..7984186 378..576 995 100 Plus
X 23542271 X 7964093..7964172 17..96 400 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:05:15 has no hits.

BS14010.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:43 Download gff for BS14010.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32858-PC 1..560 17..576 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:55:51 Download gff for BS14010.5prime
Subject Subject Range Query Range Percent Splice Strand
sn-RG 70..629 17..576 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:16:17 Download gff for BS14010.5prime
Subject Subject Range Query Range Percent Splice Strand
sn-RG 70..629 17..576 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:16:17 Download gff for BS14010.5prime
Subject Subject Range Query Range Percent Splice Strand
X 7964093..7964172 17..96 100 -> Plus
X 7982371..7982651 97..377 100 -> Plus
X 7983988..7984186 378..576 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:55:51 Download gff for BS14010.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7858126..7858205 17..96 100 -> Plus
arm_X 7876404..7876684 97..377 100 -> Plus
arm_X 7878021..7878219 378..576 100   Plus

BS14010.complete Sequence

1727 bp assembled on 2009-08-24

GenBank Submission: KX805777

> BS14010.complete
GAAGTTATCAGTCGACATGACGCGAATCATTACGTCCGGATTGTCCTGGA
ACACCTCTTCGAATGCCTGCCAAAGCAAGGAGGAAAAAAATAAGAACACC
ATTAAGTTCGATCTTCCTTACGCAAAGAAGCCGGATTCCGGAGACAGCCT
CAAGATTGCTCCCATCAGCACCATGAACGGCCAGGGCTGCGAGCTGGGCC
ACAGCAATGGCGACATCATCTCACAGAATCAACAGAAGGGATGGTGGACC
ATCGGCCTGATCAACGGCCAGCACAAGTACATGACCGCGGAGACCTTTGG
GTTCAAGCTCAACGCCAATGGCGCCAGTCTGAAGAAGAAGCAACTGTGGA
CGCTGGAACCCTCGAACACCGGTGAAAGTATTATCTACTTACGATCTCAT
CTGAACAAGTACCTTTCGGTCGATCAGTTTGGCAACGTGCTGTGCGAGAG
CGATGAGAGGGACGCGGGCAGCCGCTTCCAGATCAGCATCAGTGAGGACG
GCAGCGGACGTTGGGCGCTGAAGAACGAGTCGCGCGGCTACTTTCTGGGC
GGCACTCCGGACAAACTGGTCTGCACGGCCAAGACGCCCGGCGCCAGTGA
GTTTTGGACGGTCCATTTGGCTGCCCGGCCGCAGGTGAATCTGCGCTCCA
TCGGACGCAAGCGATTCGCCCATTTGTCGGAGTCGCAGGACGAGATCCAT
GTGGACGCCAATATTCCTTGGGGCGAGGATACGCTCTTTACGCTGGAGTT
CCGTGCCGAGGAGGGCGGTCGCTATGCTCTGCATACGTGCAACAACAAAT
ATCTGAACGCCAATGGAAAATTGCAGGTGGTGTGCAACGAGGATTGCCTG
TTCAGTGCCGAATATCATGGTGGCCATCTGGCGCTGCGCGATCGTCAGGG
TCAGTACTTGTCGCCCATTGGCTCCAAGGCGGTGTTGAAGTCCCGCTCGT
CGTCAGTGACGCGGGATGAGCTCTTCTCGCTGGAGGATTCGCTGCCCCAG
GCTTCCTTTATAGCCGGACTCAATTTGCGATATGTGAGCGTTAAGCAGGG
CGTCGATGTGACGGCCAACCAGGACGAGGTCGGTGAGAACGAGACGTTCC
AGCTGGAGTACGATTGGTCGGCGCACCGTTGGGCCCTCCGCACCACCCAG
GATCGCTACTGGTGTCTGTCGGCGGGCGGTGGCATCCAGGCCACCGGCAA
TCGTCGCTGTGCCGACGCTCTCTTCGAGCTGATCTGGCACGGCGATGGCT
CGCTCTCGTTCCGGGCTAACAACGGCAAGTTCTTGGCCACCAAGCGCTCT
GGTCATCTGTTTGCCACCTCGGAGTCGATCGAGGAGATAGCCAAGTTCTA
TTTCTACTTGATTAATAGACCAATTCTTGTACTGAAGTGCGAGCAGGGAT
TCGTGGGCTATCGCACGCCCGGCAACCTGAAGCTCGAGTGCAATAAGGCC
ACCTATGAAACGATTCTGGTGGAGCGGGCCCAGAAGGGCCTGGTGCATCT
GAAGGCGCATAGCGGCAAATACTGGCGCATCGAGGGCGAAAGCATCTCGG
TGGATGCCGATGCGCCCAGCGATGGTTTCTTCCTCGAGCTTCGCGAGCCG
ACCAGGATCTGCATAAGATCGCAGCAGGGCAAGTACCTGGGCGCTACGAA
GAACGGGGCGTTCAAGCTGCTGGATGATGGAACCGATTCGGCCACACAGT
GGGAGTTCTAGAAGCTTTCTAGACCAT

BS14010.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:28:52
Subject Length Description Subject Range Query Range Score Percent Strand
sn-RG 1539 CG32858-PG 1..1539 173..1711 7695 100 Plus
sn-RE 1539 CG32858-PE 1..1539 173..1711 7695 100 Plus
sn-RB 1539 CG32858-PB 1..1539 173..1711 7695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
sn-RG 2322 CG32858-RG 70..1764 17..1711 8475 100 Plus
sn-RB 3358 CG32858-RB 668..2284 95..1711 8085 100 Plus
sn-RA 3101 CG32858-RA 411..2027 95..1711 8085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7984470..7985039 799..1368 2850 100 Plus
X 23542271 X 7983988..7984408 378..798 2105 100 Plus
X 23542271 X 7982371..7982653 97..379 1415 100 Plus
X 23542271 X 7985100..7985356 1361..1617 1270 99.6 Plus
X 23542271 X 7985432..7985527 1616..1711 480 100 Plus
X 23542271 X 7964093..7964172 17..96 400 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:28:51 has no hits.

BS14010.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:53 Download gff for BS14010.complete
Subject Subject Range Query Range Percent Splice Strand
sn-RC 70..1764 17..1711 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:50 Download gff for BS14010.complete
Subject Subject Range Query Range Percent Splice Strand
sn-RG 70..1764 17..1711 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:32 Download gff for BS14010.complete
Subject Subject Range Query Range Percent Splice Strand
sn-RG 70..1764 17..1711 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:32 Download gff for BS14010.complete
Subject Subject Range Query Range Percent Splice Strand
X 7964093..7964172 17..96 100 -> Plus
X 7982371..7982651 97..377 100 -> Plus
X 7983988..7984408 378..798 100 -> Plus
X 7984470..7985039 799..1368 100 -> Plus
X 7985108..7985356 1369..1617 100 -> Plus
X 7985434..7985527 1618..1711 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:50 Download gff for BS14010.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7879141..7879389 1369..1617 100 -> Plus
arm_X 7879467..7879560 1618..1711 100   Plus
arm_X 7858126..7858205 17..96 100 -> Plus
arm_X 7876404..7876684 97..377 100 -> Plus
arm_X 7878021..7878441 378..798 100 -> Plus
arm_X 7878503..7879072 799..1368 100 -> Plus

BS14010.pep Sequence

Translation from 16 to 1710

> BS14010.pep
MTRIITSGLSWNTSSNACQSKEEKNKNTIKFDLPYAKKPDSGDSLKIAPI
STMNGQGCELGHSNGDIISQNQQKGWWTIGLINGQHKYMTAETFGFKLNA
NGASLKKKQLWTLEPSNTGESIIYLRSHLNKYLSVDQFGNVLCESDERDA
GSRFQISISEDGSGRWALKNESRGYFLGGTPDKLVCTAKTPGASEFWTVH
LAARPQVNLRSIGRKRFAHLSESQDEIHVDANIPWGEDTLFTLEFRAEEG
GRYALHTCNNKYLNANGKLQVVCNEDCLFSAEYHGGHLALRDRQGQYLSP
IGSKAVLKSRSSSVTRDELFSLEDSLPQASFIAGLNLRYVSVKQGVDVTA
NQDEVGENETFQLEYDWSAHRWALRTTQDRYWCLSAGGGIQATGNRRCAD
ALFELIWHGDGSLSFRANNGKFLATKRSGHLFATSESIEEIAKFYFYLIN
RPILVLKCEQGFVGYRTPGNLKLECNKATYETILVERAQKGLVHLKAHSG
KYWRIEGESISVDADAPSDGFFLELREPTRICIRSQQGKYLGATKNGAFK
LLDDGTDSATQWEF*

BS14010.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:57:53
Subject Length Description Subject Range Query Range Score Percent Strand
sn-PG 512 CG32858-PG 1..512 53..564 2724 100 Plus
sn-PE 512 CG32858-PE 1..512 53..564 2724 100 Plus
sn-PB 512 CG32858-PB 1..512 53..564 2724 100 Plus
sn-PA 512 CG32858-PA 1..512 53..564 2724 100 Plus