Clone Sequence Records
BS14010.3prime Sequence
470 bp (466 high quality bases) assembled on 2006-10-13
> BS14010.3prime
ATGGTCTAGAAAGCTTCTAGAACTCCCACTGTGTGGCCGAATCGGTTCCA
TCATCCAGCAGCTTGAACGCCCCGTTCTTCGTAGCGCCCAGGTACTTGCC
CTGCTGCGATCTTATGCAGATCCTGGTCGGCTCGCGAAGCTCGAGGAAGA
AACCATCGCTGGGCGCATCGGCATCCACCGAGATGCTTTCGCCCTCGATG
CGCCAGTATTTGCCGCTATGCGCCTTCAGATGCACCAGGCCCTTCTGGGC
CCGCTCCACCAGAATCGTTTCATAGGTGGCCTTATTGCACTCGAGCTTCA
GGTTGCCGGGCGTGCGATAGCCCACGAATCCCTGCTCGCACTTCAGTACA
AGAATTGGTCTATTAATCAAGTAGAAATAGAACTTGGCTATCTCCTCGAT
CGACTCCGAGGTGGCAAACAGATGACCAGAGCGCTTGGTGGCCAAGAACT
TGCCGTTGTTAGCCCGGAAC
BS14010.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:16:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32858-PC | 1695 | sn-RC | 1242..1695 | 470..17 | 2270 | 100 | Minus |
CG32858-PA | 1539 | sn-RA | 1086..1539 | 470..17 | 2270 | 100 | Minus |
CG32858-PB | 1539 | sn-RB | 1086..1539 | 470..17 | 2270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:14:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sn-RG | 2322 | CG32858-RG | 1311..1764 | 470..17 | 2270 | 100 | Minus |
sn-RE | 2451 | CG32858-RE | 1440..1893 | 470..17 | 2270 | 100 | Minus |
sn-RB | 3358 | CG32858-RB | 1831..2284 | 470..17 | 2270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:14:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7985100..7985356 | 367..111 | 1270 | 99.6 | Minus |
X | 23542271 | X | 7984929..7985039 | 470..360 | 555 | 100 | Minus |
X | 23542271 | X | 7985432..7985527 | 112..17 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:14:40 has no hits.
BS14010.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:42 Download gff for
BS14010.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32858-PB | 1086..1539 | 17..470 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:37:47 Download gff for
BS14010.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sn-RB | 1831..2287 | 13..470 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:49 Download gff for
BS14010.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sn-RB | 1831..2287 | 13..470 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:49 Download gff for
BS14010.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7984929..7985039 | 360..470 | 100 | -> | Minus |
X | 7985108..7985356 | 111..359 | 100 | -> | Minus |
X | 7985434..7985530 | 13..110 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:37:47 Download gff for
BS14010.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7878962..7879072 | 360..470 | 100 | -> | Minus |
arm_X | 7879141..7879389 | 111..359 | 100 | -> | Minus |
arm_X | 7879467..7879563 | 13..110 | 97 | | Minus |
BS14010.5prime Sequence
576 bp (517 high quality bases) assembled on 2006-10-13
> BS14010.5prime
GAAGTTATCAGTCGACATGACGCGAATCATTACGTCCGGATTGTCCTGGA
ACACCTCTTCGAATGCCTGCCAAAGCAAGGAGGAAAAAAATAAGAACACC
ATTAAGTTCGATCTTCCTTACGCAAAGAAGCCGGATTCCGGAGACAGCCT
CAAGATTGCTCCCATCAGCACCATGAACGGCCAGGGCTGCGAGCTGGGCC
ACAGCAATGGCGACATCATCTCACAGAATCAACAGAAGGGATGGTGGACC
ATCGGCCTGATCAACGGCCAGCACAAGTACATGACCGCGGAGACCTTTGG
GTTCAAGCTCAACGCCAATGGCGCCAGTCTGAAGAAGAAGCAACTGTGGA
CGCTGGAACCCTCGAACACCGGTGAAAGTATTATCTACTTACGATCTCAT
CTGAACAAGTACCTTTCGGTCGATCAGTTTGGCAACGTGCTGTGCGAGAG
CGATGAGAGGGACGCGGGCAGCCGCTTCCAGATCAGCATCAGTGAGGACG
GCAGCGGACGTTGGGCGCTGAAGAACGAGTCGCGCGGCTACTTTCTGGGC
GGCACTCCGGACAAACTGGTCTGCAC
BS14010.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:16:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32858-PC | 1695 | sn-RC | 1..560 | 17..576 | 2800 | 100 | Plus |
CG32858-PA | 1539 | sn-RA | 1..404 | 173..576 | 2020 | 100 | Plus |
CG32858-PB | 1539 | sn-RB | 1..404 | 173..576 | 2020 | 100 | Plus |
CG2212-PA | 4278 | sws-RA | 831..884 | 70..17 | 270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:05:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sn-RG | 2322 | CG32858-RG | 70..629 | 17..576 | 2800 | 100 | Plus |
sn-RB | 3358 | CG32858-RB | 668..1149 | 95..576 | 2410 | 100 | Plus |
sn-RA | 3101 | CG32858-RA | 411..892 | 95..576 | 2410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:05:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7982371..7982653 | 97..379 | 1415 | 100 | Plus |
X | 23542271 | X | 7983988..7984186 | 378..576 | 995 | 100 | Plus |
X | 23542271 | X | 7964093..7964172 | 17..96 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:05:15 has no hits.
BS14010.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:43 Download gff for
BS14010.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32858-PC | 1..560 | 17..576 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:55:51 Download gff for
BS14010.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sn-RG | 70..629 | 17..576 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:16:17 Download gff for
BS14010.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sn-RG | 70..629 | 17..576 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:16:17 Download gff for
BS14010.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7964093..7964172 | 17..96 | 100 | -> | Plus |
X | 7982371..7982651 | 97..377 | 100 | -> | Plus |
X | 7983988..7984186 | 378..576 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:55:51 Download gff for
BS14010.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7858126..7858205 | 17..96 | 100 | -> | Plus |
arm_X | 7876404..7876684 | 97..377 | 100 | -> | Plus |
arm_X | 7878021..7878219 | 378..576 | 100 | | Plus |
BS14010.complete Sequence
1727 bp assembled on 2009-08-24
GenBank Submission: KX805777
> BS14010.complete
GAAGTTATCAGTCGACATGACGCGAATCATTACGTCCGGATTGTCCTGGA
ACACCTCTTCGAATGCCTGCCAAAGCAAGGAGGAAAAAAATAAGAACACC
ATTAAGTTCGATCTTCCTTACGCAAAGAAGCCGGATTCCGGAGACAGCCT
CAAGATTGCTCCCATCAGCACCATGAACGGCCAGGGCTGCGAGCTGGGCC
ACAGCAATGGCGACATCATCTCACAGAATCAACAGAAGGGATGGTGGACC
ATCGGCCTGATCAACGGCCAGCACAAGTACATGACCGCGGAGACCTTTGG
GTTCAAGCTCAACGCCAATGGCGCCAGTCTGAAGAAGAAGCAACTGTGGA
CGCTGGAACCCTCGAACACCGGTGAAAGTATTATCTACTTACGATCTCAT
CTGAACAAGTACCTTTCGGTCGATCAGTTTGGCAACGTGCTGTGCGAGAG
CGATGAGAGGGACGCGGGCAGCCGCTTCCAGATCAGCATCAGTGAGGACG
GCAGCGGACGTTGGGCGCTGAAGAACGAGTCGCGCGGCTACTTTCTGGGC
GGCACTCCGGACAAACTGGTCTGCACGGCCAAGACGCCCGGCGCCAGTGA
GTTTTGGACGGTCCATTTGGCTGCCCGGCCGCAGGTGAATCTGCGCTCCA
TCGGACGCAAGCGATTCGCCCATTTGTCGGAGTCGCAGGACGAGATCCAT
GTGGACGCCAATATTCCTTGGGGCGAGGATACGCTCTTTACGCTGGAGTT
CCGTGCCGAGGAGGGCGGTCGCTATGCTCTGCATACGTGCAACAACAAAT
ATCTGAACGCCAATGGAAAATTGCAGGTGGTGTGCAACGAGGATTGCCTG
TTCAGTGCCGAATATCATGGTGGCCATCTGGCGCTGCGCGATCGTCAGGG
TCAGTACTTGTCGCCCATTGGCTCCAAGGCGGTGTTGAAGTCCCGCTCGT
CGTCAGTGACGCGGGATGAGCTCTTCTCGCTGGAGGATTCGCTGCCCCAG
GCTTCCTTTATAGCCGGACTCAATTTGCGATATGTGAGCGTTAAGCAGGG
CGTCGATGTGACGGCCAACCAGGACGAGGTCGGTGAGAACGAGACGTTCC
AGCTGGAGTACGATTGGTCGGCGCACCGTTGGGCCCTCCGCACCACCCAG
GATCGCTACTGGTGTCTGTCGGCGGGCGGTGGCATCCAGGCCACCGGCAA
TCGTCGCTGTGCCGACGCTCTCTTCGAGCTGATCTGGCACGGCGATGGCT
CGCTCTCGTTCCGGGCTAACAACGGCAAGTTCTTGGCCACCAAGCGCTCT
GGTCATCTGTTTGCCACCTCGGAGTCGATCGAGGAGATAGCCAAGTTCTA
TTTCTACTTGATTAATAGACCAATTCTTGTACTGAAGTGCGAGCAGGGAT
TCGTGGGCTATCGCACGCCCGGCAACCTGAAGCTCGAGTGCAATAAGGCC
ACCTATGAAACGATTCTGGTGGAGCGGGCCCAGAAGGGCCTGGTGCATCT
GAAGGCGCATAGCGGCAAATACTGGCGCATCGAGGGCGAAAGCATCTCGG
TGGATGCCGATGCGCCCAGCGATGGTTTCTTCCTCGAGCTTCGCGAGCCG
ACCAGGATCTGCATAAGATCGCAGCAGGGCAAGTACCTGGGCGCTACGAA
GAACGGGGCGTTCAAGCTGCTGGATGATGGAACCGATTCGGCCACACAGT
GGGAGTTCTAGAAGCTTTCTAGACCAT
BS14010.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:28:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sn-RG | 1539 | CG32858-PG | 1..1539 | 173..1711 | 7695 | 100 | Plus |
sn-RE | 1539 | CG32858-PE | 1..1539 | 173..1711 | 7695 | 100 | Plus |
sn-RB | 1539 | CG32858-PB | 1..1539 | 173..1711 | 7695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sn-RG | 2322 | CG32858-RG | 70..1764 | 17..1711 | 8475 | 100 | Plus |
sn-RB | 3358 | CG32858-RB | 668..2284 | 95..1711 | 8085 | 100 | Plus |
sn-RA | 3101 | CG32858-RA | 411..2027 | 95..1711 | 8085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7984470..7985039 | 799..1368 | 2850 | 100 | Plus |
X | 23542271 | X | 7983988..7984408 | 378..798 | 2105 | 100 | Plus |
X | 23542271 | X | 7982371..7982653 | 97..379 | 1415 | 100 | Plus |
X | 23542271 | X | 7985100..7985356 | 1361..1617 | 1270 | 99.6 | Plus |
X | 23542271 | X | 7985432..7985527 | 1616..1711 | 480 | 100 | Plus |
X | 23542271 | X | 7964093..7964172 | 17..96 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:28:51 has no hits.
BS14010.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:53 Download gff for
BS14010.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sn-RC | 70..1764 | 17..1711 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:50 Download gff for
BS14010.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sn-RG | 70..1764 | 17..1711 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:32 Download gff for
BS14010.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sn-RG | 70..1764 | 17..1711 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:32 Download gff for
BS14010.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7964093..7964172 | 17..96 | 100 | -> | Plus |
X | 7982371..7982651 | 97..377 | 100 | -> | Plus |
X | 7983988..7984408 | 378..798 | 100 | -> | Plus |
X | 7984470..7985039 | 799..1368 | 100 | -> | Plus |
X | 7985108..7985356 | 1369..1617 | 100 | -> | Plus |
X | 7985434..7985527 | 1618..1711 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:50 Download gff for
BS14010.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7879141..7879389 | 1369..1617 | 100 | -> | Plus |
arm_X | 7879467..7879560 | 1618..1711 | 100 | | Plus |
arm_X | 7858126..7858205 | 17..96 | 100 | -> | Plus |
arm_X | 7876404..7876684 | 97..377 | 100 | -> | Plus |
arm_X | 7878021..7878441 | 378..798 | 100 | -> | Plus |
arm_X | 7878503..7879072 | 799..1368 | 100 | -> | Plus |
BS14010.pep Sequence
Translation from 16 to 1710
> BS14010.pep
MTRIITSGLSWNTSSNACQSKEEKNKNTIKFDLPYAKKPDSGDSLKIAPI
STMNGQGCELGHSNGDIISQNQQKGWWTIGLINGQHKYMTAETFGFKLNA
NGASLKKKQLWTLEPSNTGESIIYLRSHLNKYLSVDQFGNVLCESDERDA
GSRFQISISEDGSGRWALKNESRGYFLGGTPDKLVCTAKTPGASEFWTVH
LAARPQVNLRSIGRKRFAHLSESQDEIHVDANIPWGEDTLFTLEFRAEEG
GRYALHTCNNKYLNANGKLQVVCNEDCLFSAEYHGGHLALRDRQGQYLSP
IGSKAVLKSRSSSVTRDELFSLEDSLPQASFIAGLNLRYVSVKQGVDVTA
NQDEVGENETFQLEYDWSAHRWALRTTQDRYWCLSAGGGIQATGNRRCAD
ALFELIWHGDGSLSFRANNGKFLATKRSGHLFATSESIEEIAKFYFYLIN
RPILVLKCEQGFVGYRTPGNLKLECNKATYETILVERAQKGLVHLKAHSG
KYWRIEGESISVDADAPSDGFFLELREPTRICIRSQQGKYLGATKNGAFK
LLDDGTDSATQWEF*
BS14010.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:57:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sn-PG | 512 | CG32858-PG | 1..512 | 53..564 | 2724 | 100 | Plus |
sn-PE | 512 | CG32858-PE | 1..512 | 53..564 | 2724 | 100 | Plus |
sn-PB | 512 | CG32858-PB | 1..512 | 53..564 | 2724 | 100 | Plus |
sn-PA | 512 | CG32858-PA | 1..512 | 53..564 | 2724 | 100 | Plus |