Clone Sequence Records
BS14013.5prime Sequence
593 bp (536 high quality bases) assembled on 2006-10-13
> BS14013.5prime
GAAGTTATCAGTCGACATGGTGCCTGCGGCCGTCAAGCTGTTGCAGGCCT
CGCTGGGCCAGTGGCGTCGAGGGAGCAAGCTGCATCCCATGGCCAAGGGC
GCGCTCACGTACGCGGTCATGTGGCCGGCGGGCAGCCTGATCCAGCAGGC
TATGGAGGGACGCAAGCTGCGCGAGTACGACTGGGCCAGGGCGTTACGTT
TCAGCTTGTTTGGAGCTCTGTACGTGGCGCCCACTCTGTACGGCTGGGTG
CGGCTCACCAGCGCCATGTGGCCGCAGACTAATCTGCGCACGGGCATCGT
TAAGGCCATCACGGAACAGCTTTCCTACGGACCATTCGCTTGCGTAAGCT
TTTTCATGGGAATGAGCTTGCTGGAGCTGAAGACCTTTAGTCAGGCCGTG
GAAGAGACGAAGGAGAAGGCGGCGCCCACGTACAAGGTCGGCGTATGCAT
CTGGCCTATCCTGCAGACCATTAACTTCTCGCTGGTGCCGGAACACAACC
GCGTGGTGTTTGTAAGCATTTGCAGCCTGATGTGGACAATTTTCCTGGCG
TACATGAAGACGCACCACGAGGAGCAATCCAACTCCGCGGNTC
BS14013.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:17:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14777-PB | 591 | CG14777-RB | 1..574 | 17..590 | 2795 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:02:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14777-RF | 1474 | CG14777-RF | 809..1382 | 17..590 | 2825 | 99.5 | Plus |
CG14777-RC | 799 | CG14777-RC | 134..707 | 17..590 | 2825 | 99.5 | Plus |
CG14777-RE | 855 | CG14777-RE | 190..763 | 17..590 | 2825 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:02:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1467811..1467965 | 17..171 | 775 | 100 | Plus |
X | 23542271 | X | 1468445..1468600 | 435..590 | 735 | 98.1 | Plus |
X | 23542271 | X | 1468249..1468384 | 303..438 | 680 | 100 | Plus |
X | 23542271 | X | 1468052..1468186 | 171..305 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 19:02:31 has no hits.
BS14013.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:46 Download gff for
BS14013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14777-PB | 1..577 | 17..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:09:02 Download gff for
BS14013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14777-RD | 233..816 | 7..593 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:55:31 Download gff for
BS14013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14777-RE | 183..766 | 7..593 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:55:31 Download gff for
BS14013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1468251..1468382 | 305..436 | 100 | -> | Plus |
X | 1468447..1468603 | 437..593 | 97 | | Plus |
X | 1467804..1467964 | 7..170 | 97 | -> | Plus |
X | 1468052..1468185 | 171..304 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:09:02 Download gff for
BS14013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1361837..1361997 | 7..170 | 97 | -> | Plus |
arm_X | 1362085..1362218 | 171..304 | 100 | -> | Plus |
arm_X | 1362284..1362415 | 305..436 | 100 | -> | Plus |
arm_X | 1362480..1362636 | 437..593 | 97 | | Plus |
BS14013.complete Sequence
623 bp assembled on 2010-07-02
GenBank Submission: KX805442
> BS14013.complete
GAAGTTATCAGTCGACATGGTGCCTGCGGCCGTCAAGCTGTTGCAGGCCT
CGCTGGGCCAGTGGCGTCGAGGGAGCAAGCTGCATCCCATGGCCAAGGGC
GCGCTCACGTACGCGGTCATGTGGCCGGCGGGCAGCCTGATCCAGCAGGC
TATGGAGGGACGCAAGCTGCGCGAGTACGACTGGGCCAGGGCGTTACGTT
TCAGCTTGTTTGGAGCTCTGTACGTGGCGCCCACTCTGTACGGCTGGGTG
CGGCTCACCAGCGCCATGTGGCCGCAGACTAATCTGCGCACGGGCATCGT
TAAGGCCATCACGGAACAGCTTTCCTACGGACCATTCGCTTGCGTAAGCT
TTTTCATGGGAATGAGCTTGCTGGAGCTGAAGACCTTTAGTCAGGCCGTG
GAAGAGACGAAGGAGAAGGCGGCGCCCACGTACAAGGTCGGCGTATGCAT
CTGGCCTATCCTGCAGACCATTAACTTCTCGCTGGTGCCGGAACACAACC
GCGTGGTGTTTGTAAGCATTTGCAGCCTGATGTGGACAATTTTCCTGGCG
TACATGAAGACGCACCACGAGGAGCAGTCGAACTCCGCGGTTCTGCCTTG
TACATAGAAGCTTTCTAGACCAT
BS14013.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:18:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14777-RF | 591 | CG14777-PF | 1..591 | 17..607 | 2940 | 99.8 | Plus |
CG14777-RC | 591 | CG14777-PC | 1..591 | 17..607 | 2940 | 99.8 | Plus |
CG14777-RE | 591 | CG14777-PE | 1..591 | 17..607 | 2940 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:18:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14777-RF | 1474 | CG14777-RF | 809..1399 | 17..607 | 2940 | 99.8 | Plus |
CG14777-RC | 799 | CG14777-RC | 134..724 | 17..607 | 2940 | 99.8 | Plus |
CG14777-RE | 855 | CG14777-RE | 190..780 | 17..607 | 2940 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:18:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1468445..1468617 | 435..607 | 850 | 99.4 | Plus |
X | 23542271 | X | 1467811..1467965 | 17..171 | 775 | 100 | Plus |
X | 23542271 | X | 1468249..1468384 | 303..438 | 680 | 100 | Plus |
X | 23542271 | X | 1468052..1468186 | 171..305 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:18:42 has no hits.
BS14013.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:24:34 Download gff for
BS14013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14777-RC | 134..724 | 17..607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:18 Download gff for
BS14013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14777-RD | 240..830 | 17..607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:26:27 Download gff for
BS14013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14777-RE | 190..780 | 17..607 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:26:27 Download gff for
BS14013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1467811..1467964 | 17..170 | 100 | -> | Plus |
X | 1468052..1468185 | 171..304 | 100 | -> | Plus |
X | 1468251..1468382 | 305..436 | 100 | -> | Plus |
X | 1468447..1468617 | 437..607 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:18 Download gff for
BS14013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1361844..1361997 | 17..170 | 100 | -> | Plus |
arm_X | 1362085..1362218 | 171..304 | 100 | -> | Plus |
arm_X | 1362284..1362415 | 305..436 | 100 | -> | Plus |
arm_X | 1362480..1362650 | 437..607 | 99 | | Plus |
BS14013.pep Sequence
Translation from 16 to 606
> BS14013.pep
MVPAAVKLLQASLGQWRRGSKLHPMAKGALTYAVMWPAGSLIQQAMEGRK
LREYDWARALRFSLFGALYVAPTLYGWVRLTSAMWPQTNLRTGIVKAITE
QLSYGPFACVSFFMGMSLLELKTFSQAVEETKEKAAPTYKVGVCIWPILQ
TINFSLVPEHNRVVFVSICSLMWTIFLAYMKTHHEEQSNSAVLPCT*
BS14013.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:33:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14777-PF | 196 | CG14777-PF | 1..196 | 1..196 | 1030 | 100 | Plus |
CG14777-PC | 196 | CG14777-PC | 1..196 | 1..196 | 1030 | 100 | Plus |
CG14777-PE | 196 | CG14777-PE | 1..196 | 1..196 | 1030 | 100 | Plus |
CG14777-PD | 196 | CG14777-PD | 1..196 | 1..196 | 1030 | 100 | Plus |
CG14777-PB | 196 | CG14777-PB | 1..196 | 1..196 | 1030 | 100 | Plus |