Clone BS14013 Report

Search the DGRC for BS14013

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:140
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG14777-RB
Protein status:BS14013.pep: full length peptide match
Sequenced Size:623

Clone Sequence Records

BS14013.5prime Sequence

593 bp (536 high quality bases) assembled on 2006-10-13

> BS14013.5prime
GAAGTTATCAGTCGACATGGTGCCTGCGGCCGTCAAGCTGTTGCAGGCCT
CGCTGGGCCAGTGGCGTCGAGGGAGCAAGCTGCATCCCATGGCCAAGGGC
GCGCTCACGTACGCGGTCATGTGGCCGGCGGGCAGCCTGATCCAGCAGGC
TATGGAGGGACGCAAGCTGCGCGAGTACGACTGGGCCAGGGCGTTACGTT
TCAGCTTGTTTGGAGCTCTGTACGTGGCGCCCACTCTGTACGGCTGGGTG
CGGCTCACCAGCGCCATGTGGCCGCAGACTAATCTGCGCACGGGCATCGT
TAAGGCCATCACGGAACAGCTTTCCTACGGACCATTCGCTTGCGTAAGCT
TTTTCATGGGAATGAGCTTGCTGGAGCTGAAGACCTTTAGTCAGGCCGTG
GAAGAGACGAAGGAGAAGGCGGCGCCCACGTACAAGGTCGGCGTATGCAT
CTGGCCTATCCTGCAGACCATTAACTTCTCGCTGGTGCCGGAACACAACC
GCGTGGTGTTTGTAAGCATTTGCAGCCTGATGTGGACAATTTTCCTGGCG
TACATGAAGACGCACCACGAGGAGCAATCCAACTCCGCGGNTC

BS14013.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:17:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG14777-PB 591 CG14777-RB 1..574 17..590 2795 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:02:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG14777-RF 1474 CG14777-RF 809..1382 17..590 2825 99.5 Plus
CG14777-RC 799 CG14777-RC 134..707 17..590 2825 99.5 Plus
CG14777-RE 855 CG14777-RE 190..763 17..590 2825 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1467811..1467965 17..171 775 100 Plus
X 23542271 X 1468445..1468600 435..590 735 98.1 Plus
X 23542271 X 1468249..1468384 303..438 680 100 Plus
X 23542271 X 1468052..1468186 171..305 675 100 Plus
Blast to na_te.dros performed on 2015-02-11 19:02:31 has no hits.

BS14013.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:46 Download gff for BS14013.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14777-PB 1..577 17..593 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:09:02 Download gff for BS14013.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14777-RD 233..816 7..593 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:55:31 Download gff for BS14013.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14777-RE 183..766 7..593 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:55:31 Download gff for BS14013.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1468251..1468382 305..436 100 -> Plus
X 1468447..1468603 437..593 97   Plus
X 1467804..1467964 7..170 97 -> Plus
X 1468052..1468185 171..304 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:09:02 Download gff for BS14013.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1361837..1361997 7..170 97 -> Plus
arm_X 1362085..1362218 171..304 100 -> Plus
arm_X 1362284..1362415 305..436 100 -> Plus
arm_X 1362480..1362636 437..593 97   Plus

BS14013.complete Sequence

623 bp assembled on 2010-07-02

GenBank Submission: KX805442

> BS14013.complete
GAAGTTATCAGTCGACATGGTGCCTGCGGCCGTCAAGCTGTTGCAGGCCT
CGCTGGGCCAGTGGCGTCGAGGGAGCAAGCTGCATCCCATGGCCAAGGGC
GCGCTCACGTACGCGGTCATGTGGCCGGCGGGCAGCCTGATCCAGCAGGC
TATGGAGGGACGCAAGCTGCGCGAGTACGACTGGGCCAGGGCGTTACGTT
TCAGCTTGTTTGGAGCTCTGTACGTGGCGCCCACTCTGTACGGCTGGGTG
CGGCTCACCAGCGCCATGTGGCCGCAGACTAATCTGCGCACGGGCATCGT
TAAGGCCATCACGGAACAGCTTTCCTACGGACCATTCGCTTGCGTAAGCT
TTTTCATGGGAATGAGCTTGCTGGAGCTGAAGACCTTTAGTCAGGCCGTG
GAAGAGACGAAGGAGAAGGCGGCGCCCACGTACAAGGTCGGCGTATGCAT
CTGGCCTATCCTGCAGACCATTAACTTCTCGCTGGTGCCGGAACACAACC
GCGTGGTGTTTGTAAGCATTTGCAGCCTGATGTGGACAATTTTCCTGGCG
TACATGAAGACGCACCACGAGGAGCAGTCGAACTCCGCGGTTCTGCCTTG
TACATAGAAGCTTTCTAGACCAT

BS14013.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:18:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG14777-RF 591 CG14777-PF 1..591 17..607 2940 99.8 Plus
CG14777-RC 591 CG14777-PC 1..591 17..607 2940 99.8 Plus
CG14777-RE 591 CG14777-PE 1..591 17..607 2940 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:18:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG14777-RF 1474 CG14777-RF 809..1399 17..607 2940 99.8 Plus
CG14777-RC 799 CG14777-RC 134..724 17..607 2940 99.8 Plus
CG14777-RE 855 CG14777-RE 190..780 17..607 2940 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:18:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1468445..1468617 435..607 850 99.4 Plus
X 23542271 X 1467811..1467965 17..171 775 100 Plus
X 23542271 X 1468249..1468384 303..438 680 100 Plus
X 23542271 X 1468052..1468186 171..305 675 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:18:42 has no hits.

BS14013.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:24:34 Download gff for BS14013.complete
Subject Subject Range Query Range Percent Splice Strand
CG14777-RC 134..724 17..607 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:18 Download gff for BS14013.complete
Subject Subject Range Query Range Percent Splice Strand
CG14777-RD 240..830 17..607 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:26:27 Download gff for BS14013.complete
Subject Subject Range Query Range Percent Splice Strand
CG14777-RE 190..780 17..607 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:26:27 Download gff for BS14013.complete
Subject Subject Range Query Range Percent Splice Strand
X 1467811..1467964 17..170 100 -> Plus
X 1468052..1468185 171..304 100 -> Plus
X 1468251..1468382 305..436 100 -> Plus
X 1468447..1468617 437..607 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:18 Download gff for BS14013.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1361844..1361997 17..170 100 -> Plus
arm_X 1362085..1362218 171..304 100 -> Plus
arm_X 1362284..1362415 305..436 100 -> Plus
arm_X 1362480..1362650 437..607 99   Plus

BS14013.pep Sequence

Translation from 16 to 606

> BS14013.pep
MVPAAVKLLQASLGQWRRGSKLHPMAKGALTYAVMWPAGSLIQQAMEGRK
LREYDWARALRFSLFGALYVAPTLYGWVRLTSAMWPQTNLRTGIVKAITE
QLSYGPFACVSFFMGMSLLELKTFSQAVEETKEKAAPTYKVGVCIWPILQ
TINFSLVPEHNRVVFVSICSLMWTIFLAYMKTHHEEQSNSAVLPCT*

BS14013.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG14777-PF 196 CG14777-PF 1..196 1..196 1030 100 Plus
CG14777-PC 196 CG14777-PC 1..196 1..196 1030 100 Plus
CG14777-PE 196 CG14777-PE 1..196 1..196 1030 100 Plus
CG14777-PD 196 CG14777-PD 1..196 1..196 1030 100 Plus
CG14777-PB 196 CG14777-PB 1..196 1..196 1030 100 Plus