Clone Sequence Records
BS14014.complete Sequence
1157 bp assembled on 2009-12-07
GenBank Submission: KX801923
> BS14014.complete
GAAGTTATCAGTCGACATGTTTAAGTCCCTGTTCGATGCCGCGCAGAACT
CAACGTTCAAGTCGCCATTCACTAGCGTCAACTGCCAGTCAGCCACGCCC
ACTTCCGCCCCCACATCCACCGCGGTGGTGACCCCCACCCTCAAGGATGT
TGCTCCACGCCAGCTGACTCGAAACCACAACATCGCTGCCGCTGCCGTTG
CCGAGGGTGACTCCTGCGAATTCGGCTCGAACCACTACTTCCTGCTGTGC
GGCCTGGGCGGCATCATCTCGTGCGGCTCCACACACACCATGGTGGTGCC
CCTGGATTTGGTCAAGTGCCGCCTGCAGGTGGACCCGGCCAAGTACAAGA
GCGTGTTCACCGGCTTCCGCATCAGCTTGGCTGAGGAGGGCGTCCGCGGA
TTGGCCAAGGGATGGGCACCCACCTTCATCGGCTACTCGATGCAGGGTCT
GTGCAAGTTCGGCCTGTACGAGGTCTTCAAGAAGGTGTACGGCGATGCTA
TCGGCGAGGAGAACGCATTCCTCTACAGAACCGGACTCTATTTGGCTGCA
TCGGCATCCGCTGAGTTCTTCGCCGATATCGCCCTGGCGCCCATGGAGGC
GGCCAAGGTCAAGATCCAGACCACGCCCGGATTCGCCAAGACATTGCGCG
AGGCTCTGCCCAAGATGACCGCCCAGGAGGGCGTGACCGCCTTCTACAAG
GGCCTGGTGCCATTGTGGATGCGCCAGATCCCATACACCATGATGAAGTT
CGCCTGCTTCGAGCGGACGCTGGAGCTGCTGTACAAGTATGTGGTGCCCA
AGCCACGTGCCGATTGCACCAAGGGTGAGCAGTTGGTGGTGACCTTCGCC
GCCGGTTACATTGCCGGCGTGTTCTGCGCCATCGTCTCGCATCCGGCGGA
CACAGTGGTGTCCAAGCTGAACCAGGCCAAGGGTGCCTCCGCCCTGGACG
TGGCCAAGCAGCTGGGTTGGTCTGGATTGTGGGGCGGTTTGGTGCCCAGG
ATCGTGATGATCGGCACATTGACCGCCGCCCAGTGGTTCATCTACGATGC
CGTCAAGGTGTTCCTGCGCATGCCACGCCCACCACCACCAGAAATGCCCG
AGTCCCTGAAGAAGAAGCTGGGCGTGACTGGCGAGCAGTAAAAGCTTTCT
AGACCAT
BS14014.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:42:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9090-RC | 1125 | CG9090-PC | 1..1125 | 17..1141 | 5625 | 100 | Plus |
CG9090-RB | 1125 | CG9090-PB | 1..1125 | 17..1141 | 5625 | 100 | Plus |
CG9090-RA | 1125 | CG9090-PA | 1..1125 | 17..1141 | 5625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9090-RC | 1265 | CG9090-RC | 38..1164 | 16..1142 | 5635 | 100 | Plus |
CG9090-RB | 1339 | CG9090-RB | 112..1238 | 16..1142 | 5635 | 100 | Plus |
CG9090-RA | 1385 | CG9090-RA | 158..1284 | 16..1142 | 5635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20279400..20280166 | 975..209 | 3835 | 100 | Minus |
2R | 25286936 | 2R | 20280235..20280428 | 209..16 | 970 | 100 | Minus |
2R | 25286936 | 2R | 20279167..20279335 | 1142..974 | 845 | 100 | Minus |
3L | 28110227 | 3L | 14538726..14539072 | 443..789 | 760 | 81.3 | Plus |
3L | 28110227 | 3L | 14539553..14539864 | 787..1098 | 570 | 78.8 | Plus |
3L | 28110227 | 3L | 14538191..14538415 | 215..439 | 300 | 75.6 | Plus |
Blast to na_te.dros performed 2014-11-28 01:42:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\mini-me | 4622 | Dpse\mini-me DPSEMINIME 4622bp | 300..323 | 92..115 | 111 | 95.8 | Plus |
BS14014.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:00 Download gff for
BS14014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9090-RA | 1..1125 | 17..1141 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:38 Download gff for
BS14014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9090-RA | 162..1278 | 23..1139 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:55:16 Download gff for
BS14014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9090-RA | 165..1281 | 23..1139 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:15 Download gff for
BS14014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9090-RA | 162..1278 | 23..1139 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:55 Download gff for
BS14014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9090-RA | 165..1281 | 23..1139 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:55 Download gff for
BS14014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20279170..20279334 | 975..1139 | 100 | <- | Minus |
2R | 20279401..20280165 | 210..974 | 100 | <- | Minus |
2R | 20280235..20280421 | 23..209 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:55:16 Download gff for
BS14014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16166675..16166839 | 975..1139 | 100 | <- | Minus |
arm_2R | 16166906..16167670 | 210..974 | 100 | <- | Minus |
arm_2R | 16167740..16167926 | 23..209 | 100 | | Minus |
BS14014.3prime Sequence
524 bp (516 high quality bases) assembled on 2006-10-13
> BS14014.3prime
ATGGTCTAGAAAGCTTTTACTGCTCGCCAGTCACGCCCAGCTTCTTCTTC
AGGGACTCGGGCATTTCTGGTGGTGGTGGGCGTGGCATGCGCAGGAACAC
CTTGACGGCATCGTAGATGAACCACTGGGCGGCGGTCAATGTGCCGATCA
TCACGATCCTGGGCACCAAACCGCCCCACAATCCAGACCAACCCAGCTGC
TTGGCCACGTCCAGGGCGGAGGCACCCTTGGCCTGGTTCAGCTTGGACAC
CACTGTGTCCGCCGGATGCGAGACGATGGCGCAGAACACGCCGGCAATGT
AACCGGCGGCGAAGGTCACCACCAACTGCTCACCCTTGGTGCAATCGGCA
CGTGGCTTGGGCACCACATACTTGTACAGCAGCTCCAGCGTCCGCTCGAA
GCAGGCGAACTTCATCATGGTGTATGGGATCTGGCGCATCCACAATGGCA
CCAGGCCCTTGTAGAAGGCGGTCACGCCCTCCTGGGCGGTCATCTTGGGC
AGAGCCTCGCGCAATGTCTTGGCG
BS14014.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:17:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9090-PA | 1125 | CG9090-RA | 618..1125 | 524..17 | 2540 | 100 | Minus |
CG4994-PA | 1071 | Mpcp-RA | 634..821 | 469..282 | 440 | 89.3 | Minus |
CG4994-PB | 1071 | Mpcp-RB | 634..821 | 469..282 | 440 | 89.3 | Minus |
CG4994-PA | 1071 | Mpcp-RA | 850..878 | 253..225 | 145 | 100 | Minus |
CG4994-PB | 1071 | Mpcp-RB | 850..878 | 253..225 | 145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:48:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9090-RC | 1265 | CG9090-RC | 656..1164 | 524..16 | 2545 | 100 | Minus |
CG9090-RB | 1339 | CG9090-RB | 730..1238 | 524..16 | 2545 | 100 | Minus |
CG9090-RA | 1385 | CG9090-RA | 776..1284 | 524..16 | 2545 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:48:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20279400..20279741 | 183..524 | 1710 | 100 | Plus |
2R | 25286936 | 2R | 20279167..20279335 | 16..184 | 845 | 100 | Plus |
3L | 28110227 | 3L | 14539553..14539864 | 371..60 | 570 | 78.8 | Minus |
3L | 28110227 | 3L | 14538917..14539072 | 524..369 | 390 | 83.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:48:12 has no hits.
BS14014.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:46 Download gff for
BS14014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9090-PA | 618..1125 | 17..524 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:08:37 Download gff for
BS14014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9090-RA | 776..1284 | 16..524 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:56:47 Download gff for
BS14014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9090-RA | 776..1284 | 16..524 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:56:47 Download gff for
BS14014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20279167..20279334 | 16..183 | 100 | <- | Plus |
2R | 20279401..20279741 | 184..524 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:08:37 Download gff for
BS14014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16166672..16166839 | 16..183 | 100 | <- | Plus |
arm_2R | 16166906..16167246 | 184..524 | 100 | | Plus |
BS14014.5prime Sequence
611 bp (525 high quality bases) assembled on 2006-10-13
> BS14014.5prime
GAAGTTATCAGTCGACATGTTTAAGTCCCTGTTCGATGCCGCGCAGAACT
CAACGTTCAAGTCGCCATTCACTAGCGTCAACTGCCAGTCAGCCACGCCC
ACTTCCGCCCCCACATCCACCGCGGTGGTGACCCCCACCCTCAAGGATGT
TGCTCCACGCCAGCTGACTCGAAACCACAACATCGCTGCCGCTGCCGTTG
CCGAGGGTGACTCCTGCGAATTCGGCTCGAACCACTACTTCCTGCTGTGC
GGCCTGGGCGGCATCATCTCGTGCGGCTCCACACACACCATGGTGGTGCC
CCTGGATTTGGTCAAGTGCCGCCTGCAGGTGGACCCGGCCAAGTACAAGA
GCGTGTTCACCGGCTTCCGCATCAGCTTGGCTGAGGAGGGCGTCCGCGGA
TTGGCCAAGGGATGGGCACCCACCTTCATCGGCTACTCGATGCAGGGTCT
GTGCAAGTTCGGCCTGTACGAGGTCTTCAAGAAGGTGTACGGCGATGCTA
TCGGCGAGGAGAACGCATTCCTCTACAGAACCGGACTCTATTTGGCTGCA
TCGGCATCCGCTGAGTTCTTCGCCGATATCGCCCTGGCGCCCATGGAGGC
GGCAAGGTCAA
BS14014.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:17:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9090-PA | 1125 | CG9090-RA | 1..596 | 17..611 | 2940 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:22:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9090-RC | 1265 | CG9090-RC | 38..634 | 16..611 | 2960 | 99.8 | Plus |
CG9090-RB | 1339 | CG9090-RB | 112..708 | 16..611 | 2960 | 99.8 | Plus |
CG9090-RA | 1385 | CG9090-RA | 158..754 | 16..611 | 2960 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:22:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20279772..20280166 | 603..209 | 1975 | 100 | Minus |
2R | 25286936 | 2R | 20280235..20280428 | 209..16 | 970 | 100 | Minus |
3L | 28110227 | 3L | 14538191..14538415 | 215..439 | 300 | 75.6 | Plus |
3L | 28110227 | 3L | 14538726..14538874 | 443..591 | 295 | 79.9 | Plus |
Blast to na_te.dros performed 2015-02-11 04:22:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\mini-me | 4622 | Dpse\mini-me DPSEMINIME 4622bp | 300..323 | 92..115 | 111 | 95.8 | Plus |
BS14014.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:47 Download gff for
BS14014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9090-PA | 1..594 | 17..609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:08:29 Download gff for
BS14014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9090-RA | 152..752 | 10..609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:11:53 Download gff for
BS14014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9090-RA | 152..752 | 10..609 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:11:53 Download gff for
BS14014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20279765..20280165 | 210..609 | 99 | <- | Minus |
2R | 20280235..20280434 | 10..209 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:08:29 Download gff for
BS14014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16167270..16167670 | 210..609 | 99 | <- | Minus |
arm_2R | 16167740..16167939 | 10..209 | 98 | | Minus |
BS14014.pep Sequence
Translation from 16 to 1140
> BS14014.pep
MFKSLFDAAQNSTFKSPFTSVNCQSATPTSAPTSTAVVTPTLKDVAPRQL
TRNHNIAAAAVAEGDSCEFGSNHYFLLCGLGGIISCGSTHTMVVPLDLVK
CRLQVDPAKYKSVFTGFRISLAEEGVRGLAKGWAPTFIGYSMQGLCKFGL
YEVFKKVYGDAIGEENAFLYRTGLYLAASASAEFFADIALAPMEAAKVKI
QTTPGFAKTLREALPKMTAQEGVTAFYKGLVPLWMRQIPYTMMKFACFER
TLELLYKYVVPKPRADCTKGEQLVVTFAAGYIAGVFCAIVSHPADTVVSK
LNQAKGASALDVAKQLGWSGLWGGLVPRIVMIGTLTAAQWFIYDAVKVFL
RMPRPPPPEMPESLKKKLGVTGEQ*
BS14014.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:00:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9090-PC | 374 | CG9090-PC | 1..374 | 1..374 | 1947 | 100 | Plus |
CG9090-PB | 374 | CG9090-PB | 1..374 | 1..374 | 1947 | 100 | Plus |
CG9090-PA | 374 | CG9090-PA | 1..374 | 1..374 | 1947 | 100 | Plus |
Mpcp-PC | 356 | CG4994-PC | 1..354 | 1..367 | 1379 | 71.1 | Plus |
Mpcp-PB | 356 | CG4994-PB | 1..354 | 1..367 | 1379 | 71.1 | Plus |