Clone BS14014 Report

Search the DGRC for BS14014

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:140
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptCG9090-RA
Protein status:BS14014.pep: full length peptide match
Sequenced Size:1157

Clone Sequence Records

BS14014.complete Sequence

1157 bp assembled on 2009-12-07

GenBank Submission: KX801923

> BS14014.complete
GAAGTTATCAGTCGACATGTTTAAGTCCCTGTTCGATGCCGCGCAGAACT
CAACGTTCAAGTCGCCATTCACTAGCGTCAACTGCCAGTCAGCCACGCCC
ACTTCCGCCCCCACATCCACCGCGGTGGTGACCCCCACCCTCAAGGATGT
TGCTCCACGCCAGCTGACTCGAAACCACAACATCGCTGCCGCTGCCGTTG
CCGAGGGTGACTCCTGCGAATTCGGCTCGAACCACTACTTCCTGCTGTGC
GGCCTGGGCGGCATCATCTCGTGCGGCTCCACACACACCATGGTGGTGCC
CCTGGATTTGGTCAAGTGCCGCCTGCAGGTGGACCCGGCCAAGTACAAGA
GCGTGTTCACCGGCTTCCGCATCAGCTTGGCTGAGGAGGGCGTCCGCGGA
TTGGCCAAGGGATGGGCACCCACCTTCATCGGCTACTCGATGCAGGGTCT
GTGCAAGTTCGGCCTGTACGAGGTCTTCAAGAAGGTGTACGGCGATGCTA
TCGGCGAGGAGAACGCATTCCTCTACAGAACCGGACTCTATTTGGCTGCA
TCGGCATCCGCTGAGTTCTTCGCCGATATCGCCCTGGCGCCCATGGAGGC
GGCCAAGGTCAAGATCCAGACCACGCCCGGATTCGCCAAGACATTGCGCG
AGGCTCTGCCCAAGATGACCGCCCAGGAGGGCGTGACCGCCTTCTACAAG
GGCCTGGTGCCATTGTGGATGCGCCAGATCCCATACACCATGATGAAGTT
CGCCTGCTTCGAGCGGACGCTGGAGCTGCTGTACAAGTATGTGGTGCCCA
AGCCACGTGCCGATTGCACCAAGGGTGAGCAGTTGGTGGTGACCTTCGCC
GCCGGTTACATTGCCGGCGTGTTCTGCGCCATCGTCTCGCATCCGGCGGA
CACAGTGGTGTCCAAGCTGAACCAGGCCAAGGGTGCCTCCGCCCTGGACG
TGGCCAAGCAGCTGGGTTGGTCTGGATTGTGGGGCGGTTTGGTGCCCAGG
ATCGTGATGATCGGCACATTGACCGCCGCCCAGTGGTTCATCTACGATGC
CGTCAAGGTGTTCCTGCGCATGCCACGCCCACCACCACCAGAAATGCCCG
AGTCCCTGAAGAAGAAGCTGGGCGTGACTGGCGAGCAGTAAAAGCTTTCT
AGACCAT

BS14014.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:42:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9090-RC 1125 CG9090-PC 1..1125 17..1141 5625 100 Plus
CG9090-RB 1125 CG9090-PB 1..1125 17..1141 5625 100 Plus
CG9090-RA 1125 CG9090-PA 1..1125 17..1141 5625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9090-RC 1265 CG9090-RC 38..1164 16..1142 5635 100 Plus
CG9090-RB 1339 CG9090-RB 112..1238 16..1142 5635 100 Plus
CG9090-RA 1385 CG9090-RA 158..1284 16..1142 5635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20279400..20280166 975..209 3835 100 Minus
2R 25286936 2R 20280235..20280428 209..16 970 100 Minus
2R 25286936 2R 20279167..20279335 1142..974 845 100 Minus
3L 28110227 3L 14538726..14539072 443..789 760 81.3 Plus
3L 28110227 3L 14539553..14539864 787..1098 570 78.8 Plus
3L 28110227 3L 14538191..14538415 215..439 300 75.6 Plus
Blast to na_te.dros performed 2014-11-28 01:42:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\mini-me 4622 Dpse\mini-me DPSEMINIME 4622bp 300..323 92..115 111 95.8 Plus

BS14014.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:00 Download gff for BS14014.complete
Subject Subject Range Query Range Percent Splice Strand
CG9090-RA 1..1125 17..1141 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:38 Download gff for BS14014.complete
Subject Subject Range Query Range Percent Splice Strand
CG9090-RA 162..1278 23..1139 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:55:16 Download gff for BS14014.complete
Subject Subject Range Query Range Percent Splice Strand
CG9090-RA 165..1281 23..1139 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:15 Download gff for BS14014.complete
Subject Subject Range Query Range Percent Splice Strand
CG9090-RA 162..1278 23..1139 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:55 Download gff for BS14014.complete
Subject Subject Range Query Range Percent Splice Strand
CG9090-RA 165..1281 23..1139 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:55 Download gff for BS14014.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20279170..20279334 975..1139 100 <- Minus
2R 20279401..20280165 210..974 100 <- Minus
2R 20280235..20280421 23..209 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:55:16 Download gff for BS14014.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16166675..16166839 975..1139 100 <- Minus
arm_2R 16166906..16167670 210..974 100 <- Minus
arm_2R 16167740..16167926 23..209 100   Minus

BS14014.3prime Sequence

524 bp (516 high quality bases) assembled on 2006-10-13

> BS14014.3prime
ATGGTCTAGAAAGCTTTTACTGCTCGCCAGTCACGCCCAGCTTCTTCTTC
AGGGACTCGGGCATTTCTGGTGGTGGTGGGCGTGGCATGCGCAGGAACAC
CTTGACGGCATCGTAGATGAACCACTGGGCGGCGGTCAATGTGCCGATCA
TCACGATCCTGGGCACCAAACCGCCCCACAATCCAGACCAACCCAGCTGC
TTGGCCACGTCCAGGGCGGAGGCACCCTTGGCCTGGTTCAGCTTGGACAC
CACTGTGTCCGCCGGATGCGAGACGATGGCGCAGAACACGCCGGCAATGT
AACCGGCGGCGAAGGTCACCACCAACTGCTCACCCTTGGTGCAATCGGCA
CGTGGCTTGGGCACCACATACTTGTACAGCAGCTCCAGCGTCCGCTCGAA
GCAGGCGAACTTCATCATGGTGTATGGGATCTGGCGCATCCACAATGGCA
CCAGGCCCTTGTAGAAGGCGGTCACGCCCTCCTGGGCGGTCATCTTGGGC
AGAGCCTCGCGCAATGTCTTGGCG

BS14014.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:17:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG9090-PA 1125 CG9090-RA 618..1125 524..17 2540 100 Minus
CG4994-PA 1071 Mpcp-RA 634..821 469..282 440 89.3 Minus
CG4994-PB 1071 Mpcp-RB 634..821 469..282 440 89.3 Minus
CG4994-PA 1071 Mpcp-RA 850..878 253..225 145 100 Minus
CG4994-PB 1071 Mpcp-RB 850..878 253..225 145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG9090-RC 1265 CG9090-RC 656..1164 524..16 2545 100 Minus
CG9090-RB 1339 CG9090-RB 730..1238 524..16 2545 100 Minus
CG9090-RA 1385 CG9090-RA 776..1284 524..16 2545 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:48:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20279400..20279741 183..524 1710 100 Plus
2R 25286936 2R 20279167..20279335 16..184 845 100 Plus
3L 28110227 3L 14539553..14539864 371..60 570 78.8 Minus
3L 28110227 3L 14538917..14539072 524..369 390 83.3 Minus
Blast to na_te.dros performed on 2015-02-12 16:48:12 has no hits.

BS14014.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:46 Download gff for BS14014.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9090-PA 618..1125 17..524 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:08:37 Download gff for BS14014.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9090-RA 776..1284 16..524 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:56:47 Download gff for BS14014.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9090-RA 776..1284 16..524 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:56:47 Download gff for BS14014.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20279167..20279334 16..183 100 <- Plus
2R 20279401..20279741 184..524 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:08:37 Download gff for BS14014.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16166672..16166839 16..183 100 <- Plus
arm_2R 16166906..16167246 184..524 100   Plus

BS14014.5prime Sequence

611 bp (525 high quality bases) assembled on 2006-10-13

> BS14014.5prime
GAAGTTATCAGTCGACATGTTTAAGTCCCTGTTCGATGCCGCGCAGAACT
CAACGTTCAAGTCGCCATTCACTAGCGTCAACTGCCAGTCAGCCACGCCC
ACTTCCGCCCCCACATCCACCGCGGTGGTGACCCCCACCCTCAAGGATGT
TGCTCCACGCCAGCTGACTCGAAACCACAACATCGCTGCCGCTGCCGTTG
CCGAGGGTGACTCCTGCGAATTCGGCTCGAACCACTACTTCCTGCTGTGC
GGCCTGGGCGGCATCATCTCGTGCGGCTCCACACACACCATGGTGGTGCC
CCTGGATTTGGTCAAGTGCCGCCTGCAGGTGGACCCGGCCAAGTACAAGA
GCGTGTTCACCGGCTTCCGCATCAGCTTGGCTGAGGAGGGCGTCCGCGGA
TTGGCCAAGGGATGGGCACCCACCTTCATCGGCTACTCGATGCAGGGTCT
GTGCAAGTTCGGCCTGTACGAGGTCTTCAAGAAGGTGTACGGCGATGCTA
TCGGCGAGGAGAACGCATTCCTCTACAGAACCGGACTCTATTTGGCTGCA
TCGGCATCCGCTGAGTTCTTCGCCGATATCGCCCTGGCGCCCATGGAGGC
GGCAAGGTCAA

BS14014.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:17:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9090-PA 1125 CG9090-RA 1..596 17..611 2940 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:22:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG9090-RC 1265 CG9090-RC 38..634 16..611 2960 99.8 Plus
CG9090-RB 1339 CG9090-RB 112..708 16..611 2960 99.8 Plus
CG9090-RA 1385 CG9090-RA 158..754 16..611 2960 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:22:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20279772..20280166 603..209 1975 100 Minus
2R 25286936 2R 20280235..20280428 209..16 970 100 Minus
3L 28110227 3L 14538191..14538415 215..439 300 75.6 Plus
3L 28110227 3L 14538726..14538874 443..591 295 79.9 Plus
Blast to na_te.dros performed 2015-02-11 04:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\mini-me 4622 Dpse\mini-me DPSEMINIME 4622bp 300..323 92..115 111 95.8 Plus

BS14014.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:47 Download gff for BS14014.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9090-PA 1..594 17..609 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:08:29 Download gff for BS14014.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9090-RA 152..752 10..609 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:11:53 Download gff for BS14014.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9090-RA 152..752 10..609 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:11:53 Download gff for BS14014.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20279765..20280165 210..609 99 <- Minus
2R 20280235..20280434 10..209 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:08:29 Download gff for BS14014.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16167270..16167670 210..609 99 <- Minus
arm_2R 16167740..16167939 10..209 98   Minus

BS14014.pep Sequence

Translation from 16 to 1140

> BS14014.pep
MFKSLFDAAQNSTFKSPFTSVNCQSATPTSAPTSTAVVTPTLKDVAPRQL
TRNHNIAAAAVAEGDSCEFGSNHYFLLCGLGGIISCGSTHTMVVPLDLVK
CRLQVDPAKYKSVFTGFRISLAEEGVRGLAKGWAPTFIGYSMQGLCKFGL
YEVFKKVYGDAIGEENAFLYRTGLYLAASASAEFFADIALAPMEAAKVKI
QTTPGFAKTLREALPKMTAQEGVTAFYKGLVPLWMRQIPYTMMKFACFER
TLELLYKYVVPKPRADCTKGEQLVVTFAAGYIAGVFCAIVSHPADTVVSK
LNQAKGASALDVAKQLGWSGLWGGLVPRIVMIGTLTAAQWFIYDAVKVFL
RMPRPPPPEMPESLKKKLGVTGEQ*

BS14014.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:00:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG9090-PC 374 CG9090-PC 1..374 1..374 1947 100 Plus
CG9090-PB 374 CG9090-PB 1..374 1..374 1947 100 Plus
CG9090-PA 374 CG9090-PA 1..374 1..374 1947 100 Plus
Mpcp-PC 356 CG4994-PC 1..354 1..367 1379 71.1 Plus
Mpcp-PB 356 CG4994-PB 1..354 1..367 1379 71.1 Plus