Clone Sequence Records
BS14015.3prime Sequence
575 bp (554 high quality bases) assembled on 2006-10-13
> BS14015.3prime
ATGGTCTAGAAAGCTTCTACTTTTTACTCTTATCCTTGTCCTTGATGGTG
TACTTGTCGTAGGACTTGGTGGGATCGTAGGGCTCCCATCGGCTGGCTGG
GAAGATGTGCTTGTTGCGCTCGTACCAGGAGCGGAGGAGTACCTTTCCGG
CATGGGACTCCTCCTTCTCCACGGAGGCGTCGCTTATCATGCGCACATCG
TCGTGGACGTCGAACTGGAAGAGCGGGCCGGATTTGCCGCGTGCCTTGGT
CACGATAAAGTCGTAGAAGGAATAGTGGTGCGGCAGGATCAGATCCTCCT
TGACGTACATCAGCTGGTCGGCCATTACGGTCTTCAGTTCGATGAACTCC
TTGCGCAGCAGCTCCAGGCACTTCTGCAGAAACTGGTAGATGGAGTTGCC
CTTCTTCATCAGCACGTTCCGCCGATGGCCGGAGCCATCCCAGTAGCTGA
ACGTGATGGAGATGTCCTCGTCCTTCAGCTCCGCCTGCTGCATTACCCAT
TCTTGACGCAGCTGCTCGCGCAGTCTGTTCTCCTGCTCCTCGCGCTCGCG
ATCTGGCAGAAAGGAAGTGTCCACG
BS14015.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12259-PA | 1080 | CG12259-RA | 522..1080 | 575..17 | 2795 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:59:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12259-RA | 1246 | CG12259-RA | 617..1175 | 575..17 | 2795 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:59:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27919915..27920473 | 17..575 | 2795 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:59:10 has no hits.
BS14015.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:47 Download gff for
BS14015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12259-PA | 522..1080 | 17..575 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:09 Download gff for
BS14015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12259-RA | 617..1182 | 6..575 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:54 Download gff for
BS14015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12259-RA | 617..1182 | 6..575 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:54 Download gff for
BS14015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27919908..27920473 | 6..575 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:09 Download gff for
BS14015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23745630..23746195 | 6..575 | 99 | | Plus |
BS14015.5prime Sequence
648 bp (541 high quality bases) assembled on 2006-10-13
> BS14015.5prime
GAAGTTATCAGTCGACATGGCCCACTACAAAGGTGCCGCCAGCGAGGCGG
GCCGTGCAGCCCAGCTGATGAAGAAGCGGGAGATCCAGCAGCAGGAGATC
GAGTTTCGCAAGAAGAAGATCGAGGAGGAGCTCAAGCTGGACAAGATTGA
GAACAAGTTTGCCACCCACTACGATGCCGTGGAGCAGCAGCTCAAGTCCT
CGACCATTGGTCTGGTCACCCTCGACGAGATGAAGGCCAAGCAGGAGGAT
ATAGTGCGGGAACGGGAGAAGAAGCTCGCCCAGAAGAAGGACGAAAAGGA
TCGGGAGAAGCAGCGCGCCCTGGAGGCCATTCAGGCGGAGAAGAACAAGC
AGAAGCGGCAGATCCAGGCGCTGTCCTTCAACCTGGACGACGACGAGGAG
GAGGAGGAGGAGGACGACGAGGATCACGATAAGAAACAGCTGAAGATTAA
GCAGGAGGATCAGCCCAAGCCCAAGTGGACGGAGATCAAGGAAGACATTT
TGCCCATAAAGAAGAAGAAGATATGCAAGAATCCTGACGTGGACACTTCT
TTTCTGCCAGATCGCGAGCGCGAGGAGCAGGAGAACAGACTGCGCGAGCA
GCTGCGTCAAGAATGGGTAATGCAGCAAGCGGAGCTGAAGGACGAGGA
BS14015.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12259-PA | 1080 | CG12259-RA | 1..632 | 17..648 | 3110 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:17:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12259-RA | 1246 | CG12259-RA | 96..727 | 17..648 | 3130 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:17:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27920363..27920994 | 648..17 | 3130 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:17:36 has no hits.
BS14015.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:47 Download gff for
BS14015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12259-PA | 1..631 | 17..647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:47:03 Download gff for
BS14015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12259-RA | 93..726 | 10..647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:32:49 Download gff for
BS14015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12259-RA | 93..726 | 10..647 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:32:49 Download gff for
BS14015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27920364..27920997 | 10..647 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:47:03 Download gff for
BS14015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23746086..23746719 | 10..647 | 99 | | Minus |
BS14015.complete Sequence
1112 bp assembled on 2006-11-01
> BS14015.complete
GAAGTTATCAGTCGACATGGCCCACTACAAAGGTGCCGCCAGCGAGGCGG
GCCGTGCAGCCCAGCTGATGAAGAAGCGGGAGATCCAGCAGCAGGAGATC
GAGTTTCGCAAGAAGAAGATCGAGGAGGAGCTCAAGCTGGACAAGATTGA
GAACAAGTTTGCCACCCACTACGATGCCGTGGAGCAGCAGCTCAAGTCCT
CGACCATTGGTCTGGTCACCCTCGACGAGATGAAGGCCAAGCAGGAGGAT
ATAGTGCGGGAACGGGAGAAGAAGCTCGCCCAGAAGAAGGACGAAAAGGA
TCGGGAGAAGCAGCGCGCCCTGGAGGCCATTCAGGCGGAGAAGAACAAGC
AGAAGCGGCAGATCCAGGCGCTGTCCTTCAACCTGGACGACGACGAGGAG
GAGGAGGAGGAGGACGACGAGGATCACGATAAGAAACAGCTGAAGATTAA
GCAGGAGGATCAGCCCAAGCCCAAGTGGACGGAGATCAAGGAAGACATTT
TGCCCATAAAGAAGAAGAAGATATGCAAGAATCCTGACGTGGACACTTCC
TTTCTGCCAGATCGCGAGCGCGAGGAGCAGGAGAACAGACTGCGCGAGCA
GCTGCGTCAAGAATGGGTAATGCAGCAGGCGGAGCTGAAGGACGAGGACA
TCTCCATCACGTTCAGCTACTGGGATGGCTCCGGCCATCGGCGGAACGTG
CTGATGAAGAAGGGCAACTCCATCTACCAGTTTCTGCAGAAGTGCCTGGA
GCTGCTGCGCAAGGAGTTCATCGAACTGAAGACCGTAATGGCCGACCAGC
TGATGTACGTCAAGGAGGATCTGATCCTGCCGCACCACTATTCCTTCTAC
GACTTTATCGTGACCAAGGCACGCGGCAAATCCGGCCCGCTCTTCCAGTT
CGACGTCCACGACGATGTGCGCATGATAAGCGACGCCTCCGTGGAGAAGG
AGGAGTCCCATGCCGGAAAGGTACTCCTCCGCTCCTGGTACGAGCGCAAC
AAGCACATCTTCCCAGCCAGCCGATGGGAGCCCTACGATCCCACCAAGTC
CTACGACAAGTACACCATCAAGGACAAGGATAAGAGTAAAAAGTAGAAGC
TTTCTAGACCAT
BS14015.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:30:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12259-RA | 1080 | CG12259-PA | 1..1080 | 17..1096 | 5400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:30:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12259-RA | 1246 | CG12259-RA | 96..1175 | 17..1096 | 5400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:30:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27919915..27920994 | 1096..17 | 5400 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:30:29 has no hits.
BS14015.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:36 Download gff for
BS14015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12259-RA | 1..1080 | 17..1096 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:55 Download gff for
BS14015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12259-RA | 75..1164 | 10..1107 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:01:38 Download gff for
BS14015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12259-RA | 96..1175 | 17..1096 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:36 Download gff for
BS14015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12259-RA | 75..1164 | 10..1107 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:42:55 Download gff for
BS14015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12259-RA | 96..1175 | 17..1096 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:42:55 Download gff for
BS14015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27919915..27920994 | 17..1096 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:01:38 Download gff for
BS14015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23745637..23746716 | 17..1096 | 100 | | Minus |
BS14015.pep Sequence
Translation from 16 to 1095
> BS14015.pep
MAHYKGAASEAGRAAQLMKKREIQQQEIEFRKKKIEEELKLDKIENKFAT
HYDAVEQQLKSSTIGLVTLDEMKAKQEDIVREREKKLAQKKDEKDREKQR
ALEAIQAEKNKQKRQIQALSFNLDDDEEEEEEDDEDHDKKQLKIKQEDQP
KPKWTEIKEDILPIKKKKICKNPDVDTSFLPDREREEQENRLREQLRQEW
VMQQAELKDEDISITFSYWDGSGHRRNVLMKKGNSIYQFLQKCLELLRKE
FIELKTVMADQLMYVKEDLILPHHYSFYDFIVTKARGKSGPLFQFDVHDD
VRMISDASVEKEESHAGKVLLRSWYERNKHIFPASRWEPYDPTKSYDKYT
IKDKDKSKK*
BS14015.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:00:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12259-PA | 359 | CG12259-PA | 1..359 | 1..359 | 1862 | 100 | Plus |
| rudhira-PE | 2075 | CG43154-PE | 1399..1574 | 13..199 | 158 | 25.7 | Plus |
| rudhira-PC | 2075 | CG43154-PC | 1399..1574 | 13..199 | 158 | 25.7 | Plus |
