Clone Sequence Records
BS14018.3prime Sequence
549 bp (500 high quality bases) assembled on 2006-10-13
> BS14018.3prime
ATGGTCTAGAAAGCTTCTACCAGTTCTTAGAGCGACGTTCGGCACTGTTG
GAACGCAACTCCTCGCTTTCTCGCCGATTATCTGCACGGTCATCCAGCCT
GTCCAGCTGCCAGAGATCGTTGTTCAGCAGGCGGCGTCCATTGGACCAAC
TCAAGGCGGCTCCAGCTCGTGCAGCATTGCCATTCAGCCGGGTGGTTATC
AATCCGTTGAGGTTTCCGGACTCCAAAAGCAGTGGCGAACTGATCAGCTG
AGCCTGAACGGTGGCACTGGATGGCTGACTGAGGATCAGCGGTTGGGAGC
TGCGATCGATAGTGATGCGGGCATTGGGCAACTGGCGCCAGGCCTCCAGA
TCGCGTTCCCTGGTCAGCAGAGTGGTAGTCCTCGACGAGCTGGTGGTGGT
GCTGACGGGCAGGCGGGTGGCGAGCAAAGTGGGTGGATGGGAGACCACGG
TGGCCTGAATGCTGGGCAGGCTTTGGGCCAGGAGTAGGGTCTGCTGGTCG
AGCAATCGCTGGTTCTGACTCTGACGACGCTCCGCTTGCTGGCGGCGAT
BS14018.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:17:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16963-PA | 1434 | Cry-RA | 902..1434 | 549..17 | 2665 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:18:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cry-RB | 2261 | CG16963-RB | 1008..1541 | 549..16 | 2670 | 100 | Minus |
| Cry-RA | 1886 | CG16963-RA | 1008..1541 | 549..16 | 2670 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:18:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11945878..11946411 | 549..16 | 2670 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-05 02:18:21 has no hits.
BS14018.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:49 Download gff for
BS14018.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16963-PA | 902..1434 | 17..549 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:09:54 Download gff for
BS14018.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cry-RA | 1008..1545 | 12..549 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:04:09 Download gff for
BS14018.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cry-RA | 1008..1545 | 12..549 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:04:09 Download gff for
BS14018.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11945878..11946415 | 12..549 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:09:54 Download gff for
BS14018.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11945878..11946415 | 12..549 | 99 | | Minus |
BS14018.5prime Sequence
525 bp (512 high quality bases) assembled on 2006-10-13
> BS14018.5prime
GAAGTTATCAGTCGACATGAAACGGACATACTTGTTGCTCTGCCTGAGTC
TCCTCACCTGCAATGTGGCCAATTCGGCATACCTGCGTCCAATCGATCTT
AACCAGCTAGCCAAGTCCTCCAACCTTCAGCAGCAGCAGCAACAGCAGCT
GCGTGGCGCTTTGAACCGAGATGATAACAACGATGACGATGATGCCACCA
CCTTGGCACCCAATTCCAACGAGGATTACGACACTCGTCCCCAGTACAGT
TTTGCCTACGATGTGAGGGACTCGCTGACTGGCGATGACAAGCGGCAGGA
GGAGAAGCGCGATGGCGACCTGGTCAAGGGTCAGTACTCCCTGATCGAAC
CCGATGGCACCCGTCGCATTGTGGAGTACACGGCCGATGATGTGAGTGGC
TTCAATGCCATTGTGTCTAAGCAGCGTCTGGATGAGCAGCAGCAGCAAAG
GCTCTCCGCCTCCACTTCGTCCCGTTTCAACAGCCTCGAGGAACTGCAGA
CCCGTCTCACCGCCCAGGCCATTGC
BS14018.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:17:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16963-PA | 1434 | Cry-RA | 1..509 | 17..525 | 2545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:23:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cry-RB | 2261 | CG16963-RB | 106..615 | 16..525 | 2550 | 100 | Plus |
| Cry-RA | 1886 | CG16963-RA | 106..615 | 16..525 | 2550 | 100 | Plus |
| Ccp84Ag-RA | 1097 | CG2342-RA | 221..313 | 296..388 | 225 | 82.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:23:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11944985..11945485 | 25..525 | 2505 | 100 | Plus |
| 3R | 32079331 | 3R | 6687163..6687255 | 296..388 | 225 | 82.8 | Plus |
| 3R | 32079331 | 3R | 6689809..6689974 | 381..216 | 215 | 75.3 | Minus |
| 3R | 32079331 | 3R | 6693017..6693155 | 220..358 | 215 | 77 | Plus |
| 3R | 32079331 | 3R | 6691322..6691424 | 358..256 | 185 | 78.6 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:23:30 has no hits.
BS14018.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:51 Download gff for
BS14018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16963-PA | 1..509 | 17..525 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:43:54 Download gff for
BS14018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cry-RA | 97..615 | 4..525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:26:44 Download gff for
BS14018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cry-RA | 97..615 | 4..525 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:26:44 Download gff for
BS14018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11944985..11945485 | 25..525 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:43:54 Download gff for
BS14018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11944985..11945485 | 25..525 | 100 | | Plus |
BS14018.complete Sequence
1466 bp assembled on 2008-08-15
GenBank Submission: KX805302
> BS14018.complete
GAAGTTATCAGTCGACATGAAACGGACATACTTGTTGCTCTGCCTGAGTC
TCCTCACCTGCAATGTGGCCAATTCGGCATACCTGCGTCCAATCGATCTT
AACCAGCTAGCCAAGTCCTCCAACCTTCAGCAGCAGCAGCAACAGCAGCT
GCGTGGCGCTTTGAACCGAGATGATAACAACGATGACGATGATGCCACCA
CCTTGGCACCCAATTCCAACGAGGATTACGACACTCGTCCCCAGTACAGT
TTTGCCTACGATGTGAGGGACTCGCTGACTGGCGATGACAAGCGGCAGGA
GGAGAAGCGCGATGGCGACCTGGTCAAGGGTCAGTACTCCCTGATCGAAC
CCGATGGCACCCGTCGCATTGTGGAGTACACGGCCGATGATGTGAGTGGC
TTCAATGCCATTGTGTCTAAGCAGCGTCTGGATGAGCAGCAGCAGCAAAG
GCTCTCCGCCTCCACTTCGTCCCGTTTCAACAGCCTCGAGGAACTGCAGA
CCCGTCTCACCGCCCAGGCCATTGCGGAAGCCCAATCTCTGGTGGAGGCC
CAACAGGCTAGCCAACTGCAGCTGGAGGCGCAGAATCGTCGAGAATCGGA
AAACCAGGCACGCAACCAAGCCCAACAGCTCATGGAACAGTTCCAACAAC
AGGTGCAACAGCAGGAGCAGCAGCGTCTGCAGCAGGAACAACAATTGAGG
GATCTGCAGCGCCTGCAGGAGCAACGAGATCGCGAGGAGCGTGATCGTGA
GCAGCGGGAGCGGGAGCAGCGTGAGCGGGAACAGCGCGAGCGCCAGCAGC
GGGAACAGGAACTCCGGGAACGGGAGCTGCGCGAGCGCGAACTCCGTGAT
CGTGAACTCCGTGATCGTGAACTCCGGGATCGGGAACAGCGTGATCGGGA
GCAGCGTGACCGCGAGGATCGCCGCCAGCAAGCGGAGCGTCGTCAGAGTC
AGAACCAGCGATTGCTCGACCAGCAGACCCTACTCCTGGCCCAAAGCCTG
CCCAGCATTCAGGCCACCGTGGTCTCCCATCCACCCACTTTGCTCGCCAC
CCGCCTGCCCGTCAGCACCACCACCAGCTCGTCGAGGACTACCACTCTGC
TGACCAGGGAACGCGATCTGGAGGCCTGGCGCCAGTTGCCCAATGCCCGC
ATCACTATCGATCGCAGCTCCCAACCGCTGATCCTCAGTCAGCCATCCAG
TGCCACCGTTCAGGCTCAGCTGATCAGTTCGCCACTGCTTTTGGAGTCCG
GAAACCTCAACGGATTGATAACCACCCGGCTGAATGGCAATGCTGCACGA
GCTGGAGCCGCCTTGAGTTGGTCCAATGGACGCCGCCTGCTGAACAACGA
TCTCTGGCAGCTGGACAGGCTGGATGACCGTGCAGATAATCGGCGAGAAA
GCGAGGAGTTGCGTTCCAACAGTGCCGAACGTCGCTCTAAGAACTGGTAG
AAGCTTTCTAGACCAT
BS14018.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:56:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cry-RB | 1434 | CG16963-PB | 1..1434 | 17..1450 | 7170 | 100 | Plus |
| Cry-RA | 1434 | CG16963-PA | 1..1434 | 17..1450 | 7170 | 100 | Plus |
| Ccp84Ag-RA | 576 | CG2342-PA | 175..267 | 296..388 | 225 | 82.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:56:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cry-RB | 2261 | CG16963-RB | 106..1541 | 16..1451 | 7180 | 100 | Plus |
| Cry-RA | 1886 | CG16963-RA | 106..1541 | 16..1451 | 7180 | 100 | Plus |
| Ccp84Ag-RA | 1097 | CG2342-RA | 221..313 | 296..388 | 225 | 82.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:56:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11944985..11946411 | 25..1451 | 7135 | 100 | Plus |
| 3R | 32079331 | 3R | 6687163..6687255 | 296..388 | 225 | 82.8 | Plus |
| 3R | 32079331 | 3R | 6689809..6689974 | 381..216 | 215 | 75.3 | Minus |
| 3R | 32079331 | 3R | 6693017..6693155 | 220..358 | 215 | 77 | Plus |
| 3R | 32079331 | 3R | 6691322..6691424 | 358..256 | 185 | 78.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:56:10 has no hits.
BS14018.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:30:06 Download gff for
BS14018.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cry-RA | 85..1533 | 4..1455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:45 Download gff for
BS14018.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cry-RA | 107..1540 | 17..1450 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:18:07 Download gff for
BS14018.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cry-RA | 95..1528 | 17..1450 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:25 Download gff for
BS14018.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cry-RA | 107..1540 | 17..1450 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:25 Download gff for
BS14018.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11944985..11946410 | 25..1450 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:45 Download gff for
BS14018.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11944985..11946410 | 25..1450 | 100 | | Plus |
BS14018.pep Sequence
Translation from 16 to 1449
> BS14018.pep
MKRTYLLLCLSLLTCNVANSAYLRPIDLNQLAKSSNLQQQQQQQLRGALN
RDDNNDDDDATTLAPNSNEDYDTRPQYSFAYDVRDSLTGDDKRQEEKRDG
DLVKGQYSLIEPDGTRRIVEYTADDVSGFNAIVSKQRLDEQQQQRLSAST
SSRFNSLEELQTRLTAQAIAEAQSLVEAQQASQLQLEAQNRRESENQARN
QAQQLMEQFQQQVQQQEQQRLQQEQQLRDLQRLQEQRDREERDREQRERE
QREREQRERQQREQELRERELRERELRDRELRDRELRDREQRDREQRDRE
DRRQQAERRQSQNQRLLDQQTLLLAQSLPSIQATVVSHPPTLLATRLPVS
TTTSSSRTTTLLTRERDLEAWRQLPNARITIDRSSQPLILSQPSSATVQA
QLISSPLLLESGNLNGLITTRLNGNAARAGAALSWSNGRRLLNNDLWQLD
RLDDRADNRRESEELRSNSAERRSKNW*
BS14018.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:42:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cry-PB | 477 | CG16963-PB | 1..477 | 1..477 | 2375 | 100 | Plus |
| Cry-PA | 477 | CG16963-PA | 1..477 | 1..477 | 2375 | 100 | Plus |
| spen-PH | 5458 | CG18497-PH | 1811..1992 | 144..318 | 277 | 32.2 | Plus |
| spen-PC | 5476 | CG18497-PC | 1829..2010 | 144..318 | 277 | 32.2 | Plus |
| spen-PG | 5487 | CG18497-PG | 1813..1994 | 144..318 | 277 | 32.2 | Plus |
| spen-PH | 5458 | CG18497-PH | 1738..1973 | 86..320 | 225 | 22.2 | Plus |
| spen-PH | 5458 | CG18497-PH | 1878..1995 | 189..310 | 225 | 35.8 | Plus |
| spen-PC | 5476 | CG18497-PC | 1756..1991 | 86..320 | 225 | 22.2 | Plus |
| spen-PC | 5476 | CG18497-PC | 1896..2013 | 189..310 | 225 | 35.8 | Plus |
| spen-PH | 5458 | CG18497-PH | 1874..2024 | 179..325 | 210 | 30.3 | Plus |
| spen-PC | 5476 | CG18497-PC | 1892..2042 | 179..325 | 210 | 30.3 | Plus |
| spen-PH | 5458 | CG18497-PH | 1830..2004 | 124..300 | 194 | 28.5 | Plus |
| spen-PC | 5476 | CG18497-PC | 1848..2022 | 124..300 | 194 | 28.5 | Plus |
