Clone BS14019 Report

Search the DGRC for BS14019

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:140
Well:19
Vector:pDNR-Dual
Associated Gene/Transcriptrho-7-RA
Protein status:BS14019.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14019.3prime Sequence

613 bp (547 high quality bases) assembled on 2006-10-13

> BS14019.3prime
ATGGTCTAGAAAGCTTCTATTTCTGCTTCGTCCGGCGCAGGTCATGGTAG
TAATTCAGTAGACCAATGCGCTTTGCCCATATCTGTGCCCCATACGTGGC
CCAAAAGATGCCAAACATGGCGCCGCCCAAATGCGCTGCGTGATCGAAGA
ACTTCCAGCCCATCACGACGCCAGCAAAGTCGATGCCCATTAGCACTTTA
ATACCAGCTCCAGCGGAGAATGTCAACGCGGGTAGAAAGAGAATGCTAAG
TTGTGTGTCCGGATACTGGGTGCATACATAGGCCAGCAGTGTCATTATAG
CTCCAGACGCACCCAGGGACATCCCCGCCTGACTCGTGGCCGCCTTGTAG
AGCACGCTCATCAGACTGGAGAAGACGCCGGCGCTGAGGTAGACCGCTAA
GAATTGCTCTTTACCCAACGATACAGCCGCAGCGTTGGCAAAGCTGTGCA
TCACGTACATATTGGCGAAAAGGTGCATAGCCGAGTAATGGCTGAATGTG
GACAGGAACATGGGCCAGCAGACGACTTTCGCCGCTGGATTGGATGTGAA
GTAGGTAATCATTGTGGATTTCAAAGCGGGCACCCGCCACATGGCGAAGG
GCACCAAAATTGC

BS14019.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8972-PA 1056 rho-7-RA 465..1056 608..17 2910 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:16:33
Subject Length Description Subject Range Query Range Score Percent Strand
rho-7-RB 1533 CG8972-RB 583..1174 608..17 2930 99.7 Minus
rho-7-RA 1328 CG8972-RA 583..1174 608..17 2930 99.7 Minus
CG34231-RC 1494 CG34231-RC 1122..1342 308..528 1105 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:16:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11987281..11987501 308..528 1105 100 Plus
2R 25286936 2R 11987027..11987227 108..308 1005 100 Plus
2R 25286936 2R 11986872..11986962 17..107 455 100 Plus
2R 25286936 2R 11988002..11988081 529..608 370 97.5 Plus
Blast to na_te.dros performed on 2015-01-31 10:16:30 has no hits.

BS14019.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:51 Download gff for BS14019.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8972-PA 461..1056 17..613 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:36:05 Download gff for BS14019.3prime
Subject Subject Range Query Range Percent Splice Strand
rho-7-RA 579..1174 17..613 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:14 Download gff for BS14019.3prime
Subject Subject Range Query Range Percent Splice Strand
rho-7-RA 579..1174 17..613 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:14 Download gff for BS14019.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11986872..11986962 17..107 100 <- Plus
2R 11987027..11987226 108..307 100 <- Plus
2R 11987281..11987501 308..528 100 <- Plus
2R 11988002..11988085 529..613 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:36:05 Download gff for BS14019.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7874377..7874467 17..107 100 <- Plus
arm_2R 7874532..7874731 108..307 100 <- Plus
arm_2R 7874786..7875006 308..528 100 <- Plus
arm_2R 7875507..7875590 529..613 96   Plus

BS14019.5prime Sequence

613 bp (544 high quality bases) assembled on 2006-10-13

> BS14019.5prime
GAAGTTATCAGTCGACATGCTCATGAGTCGAGCGCTTTGCCGGAGCTGGC
TACCCCAGGTGGCCCGCAGATGTCATGCTAATGTGAATGTGCCAATCCTG
CGGATAAACTCTGGTCATCCGGCGGCGAGGTCATGTCGGCAGATTCACAG
CAACCGAAAACAGAGCAGCAACCTGAAGCCGACGACTGGGGAGCCTGCGG
CAGCGGAGCAGAACACCCCGGTGCCGGTGAACAATGTGATCAAGGCGGTG
GCCTTCACGGGAGCATTTACGGTCGGCTGCTTTGCGGGTGCCACCATCCT
GGAGTACGAGAACACACGTAGCCTAATCCTAGAAAAGGCTCGCCAGGCGA
GATTCGGTTGGTGGCAGAGTCGTTCGCTGGCGGACAGGGATTACTGGACA
CAGATCAAACAAGACATCCGGCGGCACTGGGACTCACTGACACCCGGCGA
CAAGATGTTTGCTCCTATCTTACTCTGCAATTTGGTGGCCTTCGCCATGT
GGCGGGTGCCCGCTCTGAAATCCACAATGATTACCTACTTCACATCCAAT
CCAGCGGCGAAAGTCGTCTGCTGGCCCATGTTTCTGTCCACATTCAGCCA
TTACTCGGCTATG

BS14019.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8972-PA 1056 rho-7-RA 1..597 17..613 2960 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:12:20
Subject Length Description Subject Range Query Range Score Percent Strand
rho-7-RB 1533 CG8972-RB 119..715 17..613 2970 99.8 Plus
rho-7-RA 1328 CG8972-RA 119..715 17..613 2970 99.8 Plus
CG34231-RC 1494 CG34231-RC 1290..1342 613..561 250 98.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:12:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11988002..11988296 560..266 1475 100 Minus
2R 25286936 2R 11988362..11988563 265..64 1010 100 Minus
2R 25286936 2R 11987449..11987501 613..561 250 98.1 Minus
2R 25286936 2R 11988623..11988669 63..17 235 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:12:19 has no hits.

BS14019.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:52 Download gff for BS14019.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8972-PA 1..597 17..613 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:03:27 Download gff for BS14019.5prime
Subject Subject Range Query Range Percent Splice Strand
rho-7-RA 107..715 7..613 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:23:49 Download gff for BS14019.5prime
Subject Subject Range Query Range Percent Splice Strand
rho-7-RA 107..715 7..613 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:23:49 Download gff for BS14019.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11987449..11987501 561..613 98 <- Minus
2R 11988002..11988296 266..560 100 <- Minus
2R 11988362..11988563 64..265 100 <- Minus
2R 11988623..11988681 7..63 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:03:27 Download gff for BS14019.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7874954..7875006 561..613 98 <- Minus
arm_2R 7875507..7875801 266..560 100 <- Minus
arm_2R 7875867..7876068 64..265 100 <- Minus
arm_2R 7876128..7876186 7..63 93   Minus

BS14019.complete Sequence

1088 bp assembled on 2006-11-01

GenBank Submission: FJ637583

> BS14019.complete
GAAGTTATCAGTCGACATGCTCATGAGTCGAGCGCTTTGCCGGAGCTGGC
TACCCCAGGTGGCCCGCAGATGTCATGCTAATGTGAATGTGCCAATCCTG
CGGATAAACTCTGGTCATCCGGCGGCGAGGTCATGTCGGCAGATTCACAG
CAACCGAAAACAGAGCAGCAACCTGAAGCCGACGACTGGGGAGCCTGCGG
CAGCGGAGCAGAACACCCCGGTGCCGGTGAACAATGTGATCAAGGCGGTG
GCCTTCACGGGAGCATTTACGGTCGGCTGCTTTGCGGGTGCCACCATCCT
GGAGTACGAGAACACACGTAGCCTAATCCTAGAAAAGGCTCGCCAGGCGA
GATTCGGTTGGTGGCAGAGTCGTTCGCTGGCGGACAGGGATTACTGGACA
CAGATCAAACAAGACATCCGGCGGCACTGGGACTCACTGACACCCGGCGA
CAAGATGTTTGCTCCTATCTTACTCTGCAATTTGGTGGCCTTCGCCATGT
GGCGGGTGCCCGCTCTGAAATCCACAATGATTACCTACTTCACATCCAAT
CCAGCGGCGAAAGTCGTCTGCTGGCCCATGTTCCTGTCCACATTCAGCCA
TTACTCGGCTATGCACCTTTTCGCCAATATGTACGTGATGCACAGCTTTG
CCAACGCTGCGGCTGTATCGTTGGGTAAAGAGCAATTCTTAGCGGTCTAC
CTCAGCGCCGGCGTCTTCTCCAGTCTGATGAGCGTGCTCTACAAGGCGGC
CACGAGTCAGGCGGGGATGTCCCTGGGTGCGTCTGGAGCTATAATGACAC
TGCTGGCCTATGTATGCACCCAGTATCCGGACACACAACTTAGCATTCTC
TTTCTACCCGCGTTGACATTCTCCGCTGGAGCTGGTATTAAAGTGCTAAT
GGGCATCGACTTTGCTGGCGTCGTGATGGGCTGGAAGTTCTTCGATCACG
CAGCGCATTTGGGCGGCGCCATGTTTGGCATCTTTTGGGCCACGTATGGG
GCACAGATATGGGCAAAGCGCATTGGTCTACTGAATTACTACCATGACCT
GCGCCGGACGAAGCAGAAATAGAAGCTTTCTAGACCAT

BS14019.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
rho-7-RB 1056 CG8972-PB 1..1056 17..1072 5280 100 Plus
rho-7-RA 1056 CG8972-PA 1..1056 17..1072 5280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:07:46
Subject Length Description Subject Range Query Range Score Percent Strand
rho-7-RB 1533 CG8972-RB 119..1174 17..1072 5280 100 Plus
rho-7-RA 1328 CG8972-RA 119..1174 17..1072 5280 100 Plus
CG34231-RC 1494 CG34231-RC 1122..1342 781..561 1105 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11988002..11988296 560..266 1475 100 Minus
2R 25286936 2R 11987281..11987501 781..561 1105 100 Minus
2R 25286936 2R 11988362..11988563 265..64 1010 100 Minus
2R 25286936 2R 11987027..11987227 981..781 1005 100 Minus
2R 25286936 2R 11986872..11986962 1072..982 455 100 Minus
2R 25286936 2R 11988623..11988669 63..17 235 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:07:44 has no hits.

BS14019.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:37 Download gff for BS14019.complete
Subject Subject Range Query Range Percent Splice Strand
rho-7-RA 1..1056 17..1072 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:57 Download gff for BS14019.complete
Subject Subject Range Query Range Percent Splice Strand
rho-7-RA 76..1143 7..1072 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:07 Download gff for BS14019.complete
Subject Subject Range Query Range Percent Splice Strand
rho-7-RA 119..1168 17..1066 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:37 Download gff for BS14019.complete
Subject Subject Range Query Range Percent Splice Strand
rho-7-RA 76..1143 7..1072 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:42 Download gff for BS14019.complete
Subject Subject Range Query Range Percent Splice Strand
rho-7-RA 119..1168 17..1066 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:42 Download gff for BS14019.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11988002..11988296 266..560 100 <- Minus
2R 11988362..11988563 64..265 100 <- Minus
2R 11988623..11988669 17..63 100   Minus
2R 11986878..11986962 982..1066 100 <- Minus
2R 11987027..11987226 782..981 100 <- Minus
2R 11987281..11987501 561..781 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:07 Download gff for BS14019.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7875507..7875801 266..560 100 <- Minus
arm_2R 7875867..7876068 64..265 100 <- Minus
arm_2R 7876128..7876174 17..63 100   Minus
arm_2R 7874383..7874467 982..1066 100 <- Minus
arm_2R 7874532..7874731 782..981 100 <- Minus
arm_2R 7874786..7875006 561..781 100 <- Minus

BS14019.pep Sequence

Translation from 16 to 1071

> BS14019.pep
MLMSRALCRSWLPQVARRCHANVNVPILRINSGHPAARSCRQIHSNRKQS
SNLKPTTGEPAAAEQNTPVPVNNVIKAVAFTGAFTVGCFAGATILEYENT
RSLILEKARQARFGWWQSRSLADRDYWTQIKQDIRRHWDSLTPGDKMFAP
ILLCNLVAFAMWRVPALKSTMITYFTSNPAAKVVCWPMFLSTFSHYSAMH
LFANMYVMHSFANAAAVSLGKEQFLAVYLSAGVFSSLMSVLYKAATSQAG
MSLGASGAIMTLLAYVCTQYPDTQLSILFLPALTFSAGAGIKVLMGIDFA
GVVMGWKFFDHAAHLGGAMFGIFWATYGAQIWAKRIGLLNYYHDLRRTKQ
K*

BS14019.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
rho-7-PB 351 CG8972-PB 1..351 1..351 1846 100 Plus
rho-7-PA 351 CG8972-PA 1..351 1..351 1846 100 Plus