Clone Sequence Records
BS14019.3prime Sequence
613 bp (547 high quality bases) assembled on 2006-10-13
> BS14019.3prime
ATGGTCTAGAAAGCTTCTATTTCTGCTTCGTCCGGCGCAGGTCATGGTAG
TAATTCAGTAGACCAATGCGCTTTGCCCATATCTGTGCCCCATACGTGGC
CCAAAAGATGCCAAACATGGCGCCGCCCAAATGCGCTGCGTGATCGAAGA
ACTTCCAGCCCATCACGACGCCAGCAAAGTCGATGCCCATTAGCACTTTA
ATACCAGCTCCAGCGGAGAATGTCAACGCGGGTAGAAAGAGAATGCTAAG
TTGTGTGTCCGGATACTGGGTGCATACATAGGCCAGCAGTGTCATTATAG
CTCCAGACGCACCCAGGGACATCCCCGCCTGACTCGTGGCCGCCTTGTAG
AGCACGCTCATCAGACTGGAGAAGACGCCGGCGCTGAGGTAGACCGCTAA
GAATTGCTCTTTACCCAACGATACAGCCGCAGCGTTGGCAAAGCTGTGCA
TCACGTACATATTGGCGAAAAGGTGCATAGCCGAGTAATGGCTGAATGTG
GACAGGAACATGGGCCAGCAGACGACTTTCGCCGCTGGATTGGATGTGAA
GTAGGTAATCATTGTGGATTTCAAAGCGGGCACCCGCCACATGGCGAAGG
GCACCAAAATTGC
BS14019.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8972-PA | 1056 | rho-7-RA | 465..1056 | 608..17 | 2910 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:16:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rho-7-RB | 1533 | CG8972-RB | 583..1174 | 608..17 | 2930 | 99.7 | Minus |
rho-7-RA | 1328 | CG8972-RA | 583..1174 | 608..17 | 2930 | 99.7 | Minus |
CG34231-RC | 1494 | CG34231-RC | 1122..1342 | 308..528 | 1105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:16:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11987281..11987501 | 308..528 | 1105 | 100 | Plus |
2R | 25286936 | 2R | 11987027..11987227 | 108..308 | 1005 | 100 | Plus |
2R | 25286936 | 2R | 11986872..11986962 | 17..107 | 455 | 100 | Plus |
2R | 25286936 | 2R | 11988002..11988081 | 529..608 | 370 | 97.5 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:16:30 has no hits.
BS14019.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:51 Download gff for
BS14019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8972-PA | 461..1056 | 17..613 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:36:05 Download gff for
BS14019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-7-RA | 579..1174 | 17..613 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:14 Download gff for
BS14019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-7-RA | 579..1174 | 17..613 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:14 Download gff for
BS14019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11986872..11986962 | 17..107 | 100 | <- | Plus |
2R | 11987027..11987226 | 108..307 | 100 | <- | Plus |
2R | 11987281..11987501 | 308..528 | 100 | <- | Plus |
2R | 11988002..11988085 | 529..613 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:36:05 Download gff for
BS14019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7874377..7874467 | 17..107 | 100 | <- | Plus |
arm_2R | 7874532..7874731 | 108..307 | 100 | <- | Plus |
arm_2R | 7874786..7875006 | 308..528 | 100 | <- | Plus |
arm_2R | 7875507..7875590 | 529..613 | 96 | | Plus |
BS14019.5prime Sequence
613 bp (544 high quality bases) assembled on 2006-10-13
> BS14019.5prime
GAAGTTATCAGTCGACATGCTCATGAGTCGAGCGCTTTGCCGGAGCTGGC
TACCCCAGGTGGCCCGCAGATGTCATGCTAATGTGAATGTGCCAATCCTG
CGGATAAACTCTGGTCATCCGGCGGCGAGGTCATGTCGGCAGATTCACAG
CAACCGAAAACAGAGCAGCAACCTGAAGCCGACGACTGGGGAGCCTGCGG
CAGCGGAGCAGAACACCCCGGTGCCGGTGAACAATGTGATCAAGGCGGTG
GCCTTCACGGGAGCATTTACGGTCGGCTGCTTTGCGGGTGCCACCATCCT
GGAGTACGAGAACACACGTAGCCTAATCCTAGAAAAGGCTCGCCAGGCGA
GATTCGGTTGGTGGCAGAGTCGTTCGCTGGCGGACAGGGATTACTGGACA
CAGATCAAACAAGACATCCGGCGGCACTGGGACTCACTGACACCCGGCGA
CAAGATGTTTGCTCCTATCTTACTCTGCAATTTGGTGGCCTTCGCCATGT
GGCGGGTGCCCGCTCTGAAATCCACAATGATTACCTACTTCACATCCAAT
CCAGCGGCGAAAGTCGTCTGCTGGCCCATGTTTCTGTCCACATTCAGCCA
TTACTCGGCTATG
BS14019.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8972-PA | 1056 | rho-7-RA | 1..597 | 17..613 | 2960 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:12:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rho-7-RB | 1533 | CG8972-RB | 119..715 | 17..613 | 2970 | 99.8 | Plus |
rho-7-RA | 1328 | CG8972-RA | 119..715 | 17..613 | 2970 | 99.8 | Plus |
CG34231-RC | 1494 | CG34231-RC | 1290..1342 | 613..561 | 250 | 98.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:12:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11988002..11988296 | 560..266 | 1475 | 100 | Minus |
2R | 25286936 | 2R | 11988362..11988563 | 265..64 | 1010 | 100 | Minus |
2R | 25286936 | 2R | 11987449..11987501 | 613..561 | 250 | 98.1 | Minus |
2R | 25286936 | 2R | 11988623..11988669 | 63..17 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:12:19 has no hits.
BS14019.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:52 Download gff for
BS14019.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8972-PA | 1..597 | 17..613 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:03:27 Download gff for
BS14019.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-7-RA | 107..715 | 7..613 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:23:49 Download gff for
BS14019.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-7-RA | 107..715 | 7..613 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:23:49 Download gff for
BS14019.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11987449..11987501 | 561..613 | 98 | <- | Minus |
2R | 11988002..11988296 | 266..560 | 100 | <- | Minus |
2R | 11988362..11988563 | 64..265 | 100 | <- | Minus |
2R | 11988623..11988681 | 7..63 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:03:27 Download gff for
BS14019.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7874954..7875006 | 561..613 | 98 | <- | Minus |
arm_2R | 7875507..7875801 | 266..560 | 100 | <- | Minus |
arm_2R | 7875867..7876068 | 64..265 | 100 | <- | Minus |
arm_2R | 7876128..7876186 | 7..63 | 93 | | Minus |
BS14019.complete Sequence
1088 bp assembled on 2006-11-01
GenBank Submission: FJ637583
> BS14019.complete
GAAGTTATCAGTCGACATGCTCATGAGTCGAGCGCTTTGCCGGAGCTGGC
TACCCCAGGTGGCCCGCAGATGTCATGCTAATGTGAATGTGCCAATCCTG
CGGATAAACTCTGGTCATCCGGCGGCGAGGTCATGTCGGCAGATTCACAG
CAACCGAAAACAGAGCAGCAACCTGAAGCCGACGACTGGGGAGCCTGCGG
CAGCGGAGCAGAACACCCCGGTGCCGGTGAACAATGTGATCAAGGCGGTG
GCCTTCACGGGAGCATTTACGGTCGGCTGCTTTGCGGGTGCCACCATCCT
GGAGTACGAGAACACACGTAGCCTAATCCTAGAAAAGGCTCGCCAGGCGA
GATTCGGTTGGTGGCAGAGTCGTTCGCTGGCGGACAGGGATTACTGGACA
CAGATCAAACAAGACATCCGGCGGCACTGGGACTCACTGACACCCGGCGA
CAAGATGTTTGCTCCTATCTTACTCTGCAATTTGGTGGCCTTCGCCATGT
GGCGGGTGCCCGCTCTGAAATCCACAATGATTACCTACTTCACATCCAAT
CCAGCGGCGAAAGTCGTCTGCTGGCCCATGTTCCTGTCCACATTCAGCCA
TTACTCGGCTATGCACCTTTTCGCCAATATGTACGTGATGCACAGCTTTG
CCAACGCTGCGGCTGTATCGTTGGGTAAAGAGCAATTCTTAGCGGTCTAC
CTCAGCGCCGGCGTCTTCTCCAGTCTGATGAGCGTGCTCTACAAGGCGGC
CACGAGTCAGGCGGGGATGTCCCTGGGTGCGTCTGGAGCTATAATGACAC
TGCTGGCCTATGTATGCACCCAGTATCCGGACACACAACTTAGCATTCTC
TTTCTACCCGCGTTGACATTCTCCGCTGGAGCTGGTATTAAAGTGCTAAT
GGGCATCGACTTTGCTGGCGTCGTGATGGGCTGGAAGTTCTTCGATCACG
CAGCGCATTTGGGCGGCGCCATGTTTGGCATCTTTTGGGCCACGTATGGG
GCACAGATATGGGCAAAGCGCATTGGTCTACTGAATTACTACCATGACCT
GCGCCGGACGAAGCAGAAATAGAAGCTTTCTAGACCAT
BS14019.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:07:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rho-7-RB | 1056 | CG8972-PB | 1..1056 | 17..1072 | 5280 | 100 | Plus |
rho-7-RA | 1056 | CG8972-PA | 1..1056 | 17..1072 | 5280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:07:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rho-7-RB | 1533 | CG8972-RB | 119..1174 | 17..1072 | 5280 | 100 | Plus |
rho-7-RA | 1328 | CG8972-RA | 119..1174 | 17..1072 | 5280 | 100 | Plus |
CG34231-RC | 1494 | CG34231-RC | 1122..1342 | 781..561 | 1105 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:07:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11988002..11988296 | 560..266 | 1475 | 100 | Minus |
2R | 25286936 | 2R | 11987281..11987501 | 781..561 | 1105 | 100 | Minus |
2R | 25286936 | 2R | 11988362..11988563 | 265..64 | 1010 | 100 | Minus |
2R | 25286936 | 2R | 11987027..11987227 | 981..781 | 1005 | 100 | Minus |
2R | 25286936 | 2R | 11986872..11986962 | 1072..982 | 455 | 100 | Minus |
2R | 25286936 | 2R | 11988623..11988669 | 63..17 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:07:44 has no hits.
BS14019.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:37 Download gff for
BS14019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-7-RA | 1..1056 | 17..1072 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:57 Download gff for
BS14019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-7-RA | 76..1143 | 7..1072 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:07 Download gff for
BS14019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-7-RA | 119..1168 | 17..1066 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:37 Download gff for
BS14019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-7-RA | 76..1143 | 7..1072 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:42 Download gff for
BS14019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-7-RA | 119..1168 | 17..1066 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:42 Download gff for
BS14019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11988002..11988296 | 266..560 | 100 | <- | Minus |
2R | 11988362..11988563 | 64..265 | 100 | <- | Minus |
2R | 11988623..11988669 | 17..63 | 100 | | Minus |
2R | 11986878..11986962 | 982..1066 | 100 | <- | Minus |
2R | 11987027..11987226 | 782..981 | 100 | <- | Minus |
2R | 11987281..11987501 | 561..781 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:07 Download gff for
BS14019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7875507..7875801 | 266..560 | 100 | <- | Minus |
arm_2R | 7875867..7876068 | 64..265 | 100 | <- | Minus |
arm_2R | 7876128..7876174 | 17..63 | 100 | | Minus |
arm_2R | 7874383..7874467 | 982..1066 | 100 | <- | Minus |
arm_2R | 7874532..7874731 | 782..981 | 100 | <- | Minus |
arm_2R | 7874786..7875006 | 561..781 | 100 | <- | Minus |
BS14019.pep Sequence
Translation from 16 to 1071
> BS14019.pep
MLMSRALCRSWLPQVARRCHANVNVPILRINSGHPAARSCRQIHSNRKQS
SNLKPTTGEPAAAEQNTPVPVNNVIKAVAFTGAFTVGCFAGATILEYENT
RSLILEKARQARFGWWQSRSLADRDYWTQIKQDIRRHWDSLTPGDKMFAP
ILLCNLVAFAMWRVPALKSTMITYFTSNPAAKVVCWPMFLSTFSHYSAMH
LFANMYVMHSFANAAAVSLGKEQFLAVYLSAGVFSSLMSVLYKAATSQAG
MSLGASGAIMTLLAYVCTQYPDTQLSILFLPALTFSAGAGIKVLMGIDFA
GVVMGWKFFDHAAHLGGAMFGIFWATYGAQIWAKRIGLLNYYHDLRRTKQ
K*
BS14019.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rho-7-PB | 351 | CG8972-PB | 1..351 | 1..351 | 1846 | 100 | Plus |
rho-7-PA | 351 | CG8972-PA | 1..351 | 1..351 | 1846 | 100 | Plus |