Clone Sequence Records
BS14020.5prime Sequence
648 bp (562 high quality bases) assembled on 2006-10-13
> BS14020.5prime
GAAGTTATCAGTCGACATGGAGGAGTCACCTTACCTGCACAGCCCCTACC
AGGTGGCCATTATAGCCACCGACCTGCACCACGAGGATACCATAATCCAA
GCAGCCCAGTCCCTGGACTGTCTACACAAAACCATAAACTCGATTTTCGA
GCGAATCGATGCCCGCTTGGCGAGAAATGGTTCAAAGGTTGAGGACATAA
ACAATCGTGTGAAGCGCGCTCAGGCAAAAATCGATGCGCTCGTTGGCTCC
AAGCGGGCCATCCAGATCTTTGCACCCGCCCGCTTTCCGGCCAGCGACGT
CCTGGCACCGCTGCCAGCCACCTTTCCACAGGTGGCAGCCAATCCCCTAA
TGGAGCAGCAAGTGGACCAGCTCCCGCAAGGGACGTACAGCAGTCACAGT
GCCGCGGACCAGAAGCCGGATGATGCGGACATCTTTTTCCATGTACGTGG
CGATCGGGAGCAGGAATCGCCACTGGTCGCCGAACGGAAGATAACCAATC
GGAACCGCTGGCCTGGGCATCCTGCCTGCGGGTGGAGTGCGCTCCGTACC
CTCGCTCATGCGATTCAATACCAATGAGTTCGCCTACGGCGAAGGATCTG
AATGCCTGGAAAGCGATCCCTACCGCCGCAAAATGCTCGACGCGTTGC
BS14020.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:18:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13176-PA | 1500 | CG13176-RA | 1..629 | 17..648 | 3040 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:05:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wash-RB | 1796 | CG13176-RB | 124..752 | 17..648 | 3085 | 99.5 | Plus |
| wash-RA | 1751 | CG13176-RA | 79..707 | 17..648 | 3085 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:05:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12180701..12181329 | 17..648 | 3010 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:05:34 has no hits.
BS14020.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:52 Download gff for
BS14020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13176-PA | 1..629 | 17..648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:55:56 Download gff for
BS14020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wash-RA | 73..707 | 10..648 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:17:23 Download gff for
BS14020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wash-RA | 73..707 | 10..648 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:17:23 Download gff for
BS14020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12180695..12181329 | 10..648 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:55:56 Download gff for
BS14020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8068200..8068834 | 10..648 | 98 | | Plus |
BS14020.complete Sequence
1532 bp assembled on 2010-05-13
GenBank Submission: KX802669
> BS14020.complete
GAAGTTATCAGTCGACATGGAGGAGTCACCTTACCTGCACAGCCCCTACC
AGGTGGCCATTATAGCCACCGACCTGCACCACGAGGATACCATAATCCAA
GCAGCCCAGTCCCTGGACTGTCTACACAAAACCATAAACTCGATTTTCGA
GCGAATCGATGCCCGCTTGGCGAGAAATGGTTCAAAGGTTGAGGACATAA
ACAATCGTGTGAAGCGCGCTCAGGCAAAAATCGATGCGCTCGTTGGCTCC
AAGCGGGCCATCCAGATCTTTGCACCCGCCCGCTTTCCGGCCAGCGACGT
CCTGGCACCGCTGCCAGCCACCTTTCCACAGGTGGCAGCCAATCCCCTAA
TGGAGCAGCAAGTGGACCAGCTCCCGCAAGGGACGTACAGCAGTCACAGT
GCCGCGGACCAGAAGCCGGATGATGCGGACATCTTTTTCCATGTACGTGG
CGATCGGGAGCAGGAATCGCCACTGGTCGCCGAACGGAAGATAACCAATC
GGACCGCTGGCCTGGGCATCCTGCCTGCGGGTGGAGTGCGCTCCGTACCC
TCGCTCATGCGATTCAATACCAATGAGTTCGCCTACGGCGAGGATCTGAA
TGCCTGGAAGCGATCCCTACCGCCGCAAAATGCTCGACGCGTTGCCAGTC
AGTCCACTCAACTCACGGGAGAAAAGCAGCTCGCTCCGGCACCTCATTCG
CTGGCCCACGGCACCACCAAACTGGCCACTCCAGCTGGGGACCTGCGCTA
CAATCCTGCTGCTTTGGCTGCACCCGCCATTGATGTTCCGCTGGACCTGC
CCGACCTACCGGGCATAGCGAATGATCTGCAATATGAGCCAGTGGAGGAG
CAAACACCAATAGCGCCTTCCCAGCAGTTCGGTGATTTACCAGAGCTGCC
GGATTTGGGCCTCGAGGAGCAGGATATAATAGTGCAAGCCATCGCGGCAC
AGACGCACATTCCGGGACCGGTGCGTAGGAAGAGTGTGGGACAATGTCCT
TCGCCAGTTACGGCGGCACCACCGCCTCCTCCTCCGCCACCACCGCCGCC
TCCACCTCCTCCACCAGCGCAGACGAGCGCAATTCCATCACCGCCACCCT
TTCCCACCAAAGGAGCTGTGAAACCGCTCTCCCCGTCGTTAGCAACACCT
CTTAACATGCCGCAGCCGCCTCCAGCTACTGAAGATCCGCGATCTGAGCT
TATGGCCGCCATAAGAAACGCCGGTGGAGTGCATGGCGGTCGTCTGCGGT
CGCCTGCGGCTGCGCCGCTCGACGTGGTGGACAACAGTCGCTCCAAGGCG
GGAGGCGCTGTCACGGGGGATTTGATGGCAGACCTGCATAACAAGCTAAT
GCTGCGACGCAAGGGAATTTCTGGGAGCCAGAATCCCGTGGAGGCCACTG
CTGGCAATCCCCTGATGCAGCAGCTCTCCCGCGTCATACCGCCGCCGGTG
CAGCCCCGCAAGGGATCTAAGTCGAGTGACGAACACTCCGAGGACGACGA
GGATGGGTGGAACTAGAAGCTTTCTAGACCAT
BS14020.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:14:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wash-RB | 1500 | CG13176-PB | 1..1500 | 17..1516 | 7500 | 100 | Plus |
| wash-RA | 1500 | CG13176-PA | 1..1500 | 17..1516 | 7500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:14:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wash-RB | 1796 | CG13176-RB | 124..1623 | 17..1516 | 7500 | 100 | Plus |
| wash-RA | 1751 | CG13176-RA | 79..1578 | 17..1516 | 7500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:14:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12180701..12182200 | 17..1516 | 7500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:14:44 has no hits.
BS14020.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-13 13:55:39 Download gff for
BS14020.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13176-RA | 62..1561 | 17..1516 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:37 Download gff for
BS14020.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wash-RA | 79..1578 | 17..1516 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:03 Download gff for
BS14020.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wash-RA | 79..1578 | 17..1516 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:03 Download gff for
BS14020.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12180701..12182200 | 17..1516 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:37 Download gff for
BS14020.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8068206..8069705 | 17..1516 | 100 | | Plus |
BS14020.pep Sequence
Translation from 16 to 1515
> BS14020.pep
MEESPYLHSPYQVAIIATDLHHEDTIIQAAQSLDCLHKTINSIFERIDAR
LARNGSKVEDINNRVKRAQAKIDALVGSKRAIQIFAPARFPASDVLAPLP
ATFPQVAANPLMEQQVDQLPQGTYSSHSAADQKPDDADIFFHVRGDREQE
SPLVAERKITNRTAGLGILPAGGVRSVPSLMRFNTNEFAYGEDLNAWKRS
LPPQNARRVASQSTQLTGEKQLAPAPHSLAHGTTKLATPAGDLRYNPAAL
AAPAIDVPLDLPDLPGIANDLQYEPVEEQTPIAPSQQFGDLPELPDLGLE
EQDIIVQAIAAQTHIPGPVRRKSVGQCPSPVTAAPPPPPPPPPPPPPPPP
AQTSAIPSPPPFPTKGAVKPLSPSLATPLNMPQPPPATEDPRSELMAAIR
NAGGVHGGRLRSPAAAPLDVVDNSRSKAGGAVTGDLMADLHNKLMLRRKG
ISGSQNPVEATAGNPLMQQLSRVIPPPVQPRKGSKSSDEHSEDDEDGWN*
BS14020.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:32:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wash-PB | 499 | CG13176-PB | 1..499 | 1..499 | 2603 | 100 | Plus |
| wash-PA | 499 | CG13176-PA | 1..499 | 1..499 | 2603 | 100 | Plus |
| WASp-PC | 494 | CG1520-PC | 312..494 | 310..499 | 195 | 31.5 | Plus |
| WASp-PD | 527 | CG1520-PD | 345..527 | 310..499 | 195 | 31.5 | Plus |
| WASp-PB | 527 | CG1520-PB | 345..527 | 310..499 | 195 | 31.5 | Plus |
