Clone Sequence Records
BS14021.5prime Sequence
423 bp (423 high quality bases) assembled on 2006-10-13
> BS14021.5prime
GAAGTTATCAGTCGACATGCCACCGAAAAAGGATGCGAAGAGTGGAAAGG
ATGCAGGGAAAGGTGGCAAAAAGCCAGCCGCCGAAGACAAGTCTGCCGGT
AAGGAGAAGAAGGGAGGCAATGCTGTAAAGGTTCGTCACATCTTGTGCGA
GAAGCAGGGCAAGATCACCGAAGCGATGGAGAAGCTAAAGGCAGGCCAAA
AATTCCCCGAGGTAGCGGCTGCTTACAGCGAGGACAAGGCGCGACAAGGC
GGCGATCTCGGATGGCAGATCCGAGGAGCGATGGTGGGCCCATTTCAGGA
CGCCGCCTTCGCATTGCCCATCTCCACTGTCAACAATCCCGTGTACACAG
ATCCCCCGATTAAGACCAAGTTTGGCTACCACATCATCATGGTGGAGGGA
AAGAAATGAAAGCTTTCTAGACC
BS14021.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11858-PA | 393 | CG11858-RA | 1..393 | 17..409 | 1965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:08:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11858-RA | 493 | CG11858-RA | 70..463 | 17..410 | 1970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:08:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25262945..25263262 | 93..410 | 1590 | 100 | Plus |
3R | 32079331 | 3R | 25262810..25262885 | 17..92 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:08:52 has no hits.
BS14021.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:52 Download gff for
BS14021.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11858-PA | 1..393 | 17..409 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:23:29 Download gff for
BS14021.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11858-RA | 70..467 | 17..416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:24 Download gff for
BS14021.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11858-RA | 70..467 | 17..416 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:24 Download gff for
BS14021.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25262810..25262885 | 17..92 | 100 | -> | Plus |
3R | 25262945..25263266 | 93..416 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:23:29 Download gff for
BS14021.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21088532..21088607 | 17..92 | 100 | -> | Plus |
arm_3R | 21088667..21088988 | 93..416 | 99 | | Plus |
BS14021.complete Sequence
425 bp assembled on 2006-11-01
GenBank Submission: FJ637584
> BS14021.complete
GAAGTTATCAGTCGACATGCCACCGAAAAAGGATGCGAAGAGTGGAAAGG
ATGCAGGGAAAGGTGGCAAAAAGCCAGCCGCCGAAGACAAGTCTGCCGGT
AAGGAGAAGAAGGGAGGCAATGCTGTAAAGGTTCGTCACATCTTGTGCGA
GAAGCAGGGCAAGATCACCGAAGCGATGGAGAAGCTAAAGGCAGGCCAAA
AATTCCCCGAGGTAGCGGCTGCTTACAGCGAGGACAAGGCGCGACAAGGC
GGCGATCTCGGATGGCAGATCCGAGGAGCGATGGTGGGCCCATTTCAGGA
CGCCGCCTTCGCATTGCCCATCTCCACTGTCAACAATCCCGTGTACACAG
ATCCCCCGATTAAGACCAAGTTTGGCTACCACATCATCATGGTGGAGGGA
AAGAAATGAAAGCTTTCTAGACCAT
BS14021.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:53:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11858-RA | 393 | CG11858-PA | 1..393 | 17..409 | 1965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:53:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11858-RA | 493 | CG11858-RA | 70..463 | 17..410 | 1970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:53:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25262945..25263262 | 93..410 | 1590 | 100 | Plus |
3R | 32079331 | 3R | 25262810..25262885 | 17..92 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:53:32 has no hits.
BS14021.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:10 Download gff for
BS14021.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11858-RA | 1..393 | 17..409 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:27 Download gff for
BS14021.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11858-RA | 68..465 | 17..416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:46 Download gff for
BS14021.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11858-RA | 70..461 | 17..408 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:10 Download gff for
BS14021.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11858-RA | 68..465 | 17..416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:31 Download gff for
BS14021.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11858-RA | 70..461 | 17..408 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:31 Download gff for
BS14021.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25262810..25262885 | 17..92 | 100 | -> | Plus |
3R | 25262945..25263260 | 93..408 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:46 Download gff for
BS14021.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21088532..21088607 | 17..92 | 100 | -> | Plus |
arm_3R | 21088667..21088982 | 93..408 | 100 | | Plus |
BS14021.pep Sequence
Translation from 16 to 408
> BS14021.pep
MPPKKDAKSGKDAGKGGKKPAAEDKSAGKEKKGGNAVKVRHILCEKQGKI
TEAMEKLKAGQKFPEVAAAYSEDKARQGGDLGWQIRGAMVGPFQDAAFAL
PISTVNNPVYTDPPIKTKFGYHIIMVEGKK*
BS14021.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11858-PA | 130 | CG11858-PA | 1..130 | 1..130 | 682 | 100 | Plus |