Clone Sequence Records
BS14023.3prime Sequence
522 bp (522 high quality bases) assembled on 2006-10-13
> BS14023.3prime
ATGGTCTAGAAAGCTTTCATTCCTTGATCTCGGGAATCTTGAAGCCCGAA
GAGCGCATCTCGCGCAGCATGCACATAGCGATCCCGTGGGCTGCCTCGCA
CTTGTCCTGCTCGGCCTTTAGCTCCTCGTTGCAGGTCTTGACGATGCGCC
TGCCGTCGTCCTCGCGATCCGGGAACATCATGTTGATCATATCGACCGTC
TTGTCCTCGTTATACTGCAACTGATCCTCGGGCATCAGCTCGAACTGCTC
CAGCATGCAGTGGCGGAAGCACTTGGTCTCGTGCTTGGCGTCCTCCTTGT
TCAGCACCATCTCGACGATGTTCTCCCTCGACGGCTTTGGCGTGCAGGCG
TCGCCAAAGGGCTCGATCAGCTCCACCACCTCGTCCACGGTCATGGACCC
CTCCTCCTCGTCCGCCGTCGCCGATCCCATCAGCACGGCGGCGCAGGCCA
CTGCTAGCAGAAGGTTCGTCATCTTCAACGTCGTCGTCATTCGGCTGCAC
TGCATCATGTCGACTGATAACT
BS14023.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1670-PA | 492 | Obp19b-RA | 1..492 | 508..17 | 2460 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:47:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp19b-RA | 645 | CG1670-RA | 13..504 | 508..17 | 2460 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:47:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20416993..20417219 | 325..99 | 1135 | 100 | Minus |
| X | 23542271 | X | 20416745..20416928 | 508..325 | 920 | 100 | Minus |
| X | 23542271 | X | 20417587..20417671 | 101..17 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:47:14 has no hits.
BS14023.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:54 Download gff for
BS14023.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1670-PA | 1..492 | 17..508 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:39 Download gff for
BS14023.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp19b-RA | 6..507 | 13..515 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:29 Download gff for
BS14023.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp19b-RA | 6..507 | 13..515 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:29 Download gff for
BS14023.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20416738..20416928 | 325..515 | 97 | -> | Minus |
| X | 20416994..20417216 | 102..324 | 100 | -> | Minus |
| X | 20417587..20417674 | 13..101 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:39 Download gff for
BS14023.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20287765..20287955 | 325..515 | 97 | -> | Minus |
| arm_X | 20288021..20288243 | 102..324 | 100 | -> | Minus |
| arm_X | 20288614..20288701 | 13..101 | 97 | | Minus |
BS14023.5prime Sequence
522 bp (488 high quality bases) assembled on 2006-10-13
> BS14023.5prime
GAAGTTATCAGTCGACATGATGCAGTGCAGCCGAATGACGACGACGTTGA
AGATGACGAACCTTCTGCTAGCAGTGGCCTGCGCCGCCGTGCTGATGGGA
TCGGCGACGGCGGACGAGGAGGAGGGGTCCATGACCGTGGACGAGGTGGT
GGAGCTGATCGAGCCCTTTGGCGACGCCTGCACGCCAAAGCCGTCGAGGG
AGAACATCGTCGAGATGGTGCTGAACAAGGAGGACGCCAAGCACGAGACC
AAGTGCTTCCGCCACTGCATGCTGGAGCAGTTCGAGCTGATGCCCGAGGA
TCAGTTGCAGTATAACGAGGACAAGACGGTCGATATGATCAACATGATGT
TCCCGGATCGCGAGGACGACGGCAGGCGCATCGTCAAGACCTGCAACGAG
GAGCTAAAGGCCGAGCAGGACAAGTGCGAGGCAGCCCACGGGATCGCTAT
GTGCATGCTGCGCGAGATGCGCTCTTCGGGCTTCAAGATTCCCGAGATCA
AGGAATGAAAGCTTTCTAGACC
BS14023.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1670-PA | 492 | Obp19b-RA | 1..492 | 17..508 | 2460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:16:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp19b-RA | 645 | CG1670-RA | 13..504 | 17..508 | 2460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:16:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20416993..20417219 | 200..426 | 1135 | 100 | Plus |
| X | 23542271 | X | 20416745..20416928 | 17..200 | 920 | 100 | Plus |
| X | 23542271 | X | 20417587..20417671 | 424..508 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:16:39 has no hits.
BS14023.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:54 Download gff for
BS14023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1670-PA | 1..492 | 17..508 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:36:06 Download gff for
BS14023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp19b-RA | 6..507 | 10..512 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:15 Download gff for
BS14023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp19b-RA | 6..507 | 10..512 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:15 Download gff for
BS14023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20416738..20416928 | 10..200 | 97 | -> | Plus |
| X | 20416994..20417216 | 201..423 | 100 | -> | Plus |
| X | 20417587..20417674 | 424..512 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:36:06 Download gff for
BS14023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20287765..20287955 | 10..200 | 97 | -> | Plus |
| arm_X | 20288021..20288243 | 201..423 | 100 | -> | Plus |
| arm_X | 20288614..20288701 | 424..512 | 97 | | Plus |
BS14023.complete Sequence
524 bp assembled on 2006-11-01
GenBank Submission: FJ637585
> BS14023.complete
GAAGTTATCAGTCGACATGATGCAGTGCAGCCGAATGACGACGACGTTGA
AGATGACGAACCTTCTGCTAGCAGTGGCCTGCGCCGCCGTGCTGATGGGA
TCGGCGACGGCGGACGAGGAGGAGGGGTCCATGACCGTGGACGAGGTGGT
GGAGCTGATCGAGCCCTTTGGCGACGCCTGCACGCCAAAGCCGTCGAGGG
AGAACATCGTCGAGATGGTGCTGAACAAGGAGGACGCCAAGCACGAGACC
AAGTGCTTCCGCCACTGCATGCTGGAGCAGTTCGAGCTGATGCCCGAGGA
TCAGTTGCAGTATAACGAGGACAAGACGGTCGATATGATCAACATGATGT
TCCCGGATCGCGAGGACGACGGCAGGCGCATCGTCAAGACCTGCAACGAG
GAGCTAAAGGCCGAGCAGGACAAGTGCGAGGCAGCCCACGGGATCGCTAT
GTGCATGCTGCGCGAGATGCGCTCTTCGGGCTTCAAGATTCCCGAGATCA
AGGAATGAAAGCTTTCTAGACCAT
BS14023.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:12:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp19b-RA | 492 | CG1670-PA | 1..492 | 17..508 | 2460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:12:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp19b-RA | 645 | CG1670-RA | 13..504 | 17..508 | 2460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:12:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20416993..20417219 | 200..426 | 1135 | 100 | Plus |
| X | 23542271 | X | 20416745..20416928 | 17..200 | 920 | 100 | Plus |
| X | 23542271 | X | 20417587..20417671 | 424..508 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:12:24 has no hits.
BS14023.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:11 Download gff for
BS14023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp19b-RA | 1..492 | 17..508 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:29 Download gff for
BS14023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp19b-RA | 17..518 | 10..512 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:19:55 Download gff for
BS14023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp19b-RA | 13..503 | 17..507 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:12 Download gff for
BS14023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp19b-RA | 17..518 | 10..512 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:54 Download gff for
BS14023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp19b-RA | 13..503 | 17..507 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:54 Download gff for
BS14023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20416994..20417216 | 201..423 | 100 | -> | Plus |
| X | 20416745..20416928 | 17..200 | 100 | -> | Plus |
| X | 20417587..20417670 | 424..507 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:19:55 Download gff for
BS14023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20288021..20288243 | 201..423 | 100 | -> | Plus |
| arm_X | 20288614..20288697 | 424..507 | 100 | | Plus |
| arm_X | 20287772..20287955 | 17..200 | 100 | -> | Plus |
BS14023.pep Sequence
Translation from 16 to 507
> BS14023.pep
MMQCSRMTTTLKMTNLLLAVACAAVLMGSATADEEEGSMTVDEVVELIEP
FGDACTPKPSRENIVEMVLNKEDAKHETKCFRHCMLEQFELMPEDQLQYN
EDKTVDMINMMFPDREDDGRRIVKTCNEELKAEQDKCEAAHGIAMCMLRE
MRSSGFKIPEIKE*
BS14023.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp19b-PA | 163 | CG1670-PA | 1..163 | 1..163 | 852 | 100 | Plus |
