Clone BS14025 Report

Search the DGRC for BS14025

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:140
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptCG4908-RA
Protein status:BS14025.pep: full length peptide match
Sequenced Size:1328

Clone Sequence Records

BS14025.3prime Sequence

539 bp (524 high quality bases) assembled on 2006-10-13

> BS14025.3prime
ATGGTCTAGAAAGCTTTTAATTAATCTTTTTATTATGATCTAAAACATTT
TCCCAGATATCTTCACAAGAATCAATAACAGTTTGCGGCGAGGACAGTTT
GTGCTTCATGAAAAAGCCTTGAATTTGCGCCGGACTAGCGGAGCGTCCAA
AGGAATTCACTCGTTTTCCGAACTCCTCGGCTTTTGTGGTGTCACTGCTG
GCGAAGAAGTTCTTGAACATCTCCTCCAACTGATATTGCGTACAATAGCC
AATGTATTCCTTTAAATCGATTCTACCAGGACGAACTAAGGCGGGATCGA
GGCGGTCAATGTAGTTTGTTGTCATGAAGACAATTCTGGCCTCCGTGGAG
CCCACACCGTCCAAGCAATTTAGGAGTCCACTGAACGTTATCCTGTTGAG
ACCGTCAAAGGCGGATTTCTGCTGCGGAGTAGCTTCGCGCGAGACGAATG
CTGCGTCGATGTCCTCCAGCAGAATGATACTCTGCTCTGGCGCAACATTC
AGGAGATGATTGAGTCGATCATCGGTGAGGCCTCTTTCG

BS14025.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:18:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG4908-PB 1296 CG4908-RB 774..1294 539..19 2605 100 Minus
CG4908-PA 1296 CG4908-RA 774..1294 539..19 2605 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG4908-RA 1353 CG4908-RA 825..1345 539..19 2605 100 Minus
CG4908-RB 1710 CG4908-RB 1182..1702 539..19 2605 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10223919..10224439 539..19 2605 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:26:35 has no hits.

BS14025.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:55 Download gff for BS14025.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4908-PA 774..1296 17..539 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:52:58 Download gff for BS14025.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4908-RB 1182..1710 11..539 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:54:00 Download gff for BS14025.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4908-RB 1182..1710 11..539 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:54:00 Download gff for BS14025.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10223919..10224444 11..539 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:52:58 Download gff for BS14025.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10223919..10224444 11..539 99   Minus

BS14025.5prime Sequence

638 bp (567 high quality bases) assembled on 2006-10-13

> BS14025.5prime
GAAGTTATCAGTCGACATGACTTTGCCCGATCTTGTAGCTGGACTTTCGT
CAAATCCCTACTTTGGTGCCGGTTTTGGACTATTTGGTGTGGGCGCCGCT
GCTGCCATATTGCGCAAGGGCCTCCAGGGCGGAGTGATACTGTTCCGGCG
GCACTGCATGATTACCCTGGAGGTGCCGTGTCGGGACAAATCCTATCAGT
GGCTGTTAAAATGGATTACGATCAGAGGAGCGCGAAAAACGCAACACTTG
AGCGTGGAGACAAACTTTGTGCAGAACGACAATGGCACAATCAAAACCAG
CTATGACTTCATACCCAGCATAGGCAAGCATCTGTTCCAGTACAAGGGCA
ATTGGATTCAGGTGGAGCGGACCAGGGAACAACAGACATTGGACCTTCAC
ATGGGTGTTCCTTGGGAGACAGTGACGCTTACAGCGTTTGGTAACAATAA
AGGTATATATTTCGATATCCTCGAAGAGGCTAGGCAGCTGGCTCTGGAGG
CCACAGAGGGCAAAACCGTGCTGTACACAGCGATGGGTGCGGAATGGAGA
CCCTTCGGACATCCGCGCAGAAGGCGTCCCACTGGATCGGTGGTGCTGGA
TCGCGGAACTTCGCAACGAATCATTGCCGACTGCCAGG

BS14025.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4908-PB 1296 CG4908-RB 1..622 17..638 3085 99.8 Plus
CG4908-PA 1296 CG4908-RA 1..622 17..638 3085 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:41:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4908-RA 1353 CG4908-RA 52..673 17..638 3095 99.8 Plus
CG4908-RB 1710 CG4908-RB 409..1030 17..638 3095 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:41:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10223146..10223767 17..638 3095 99.8 Plus
Blast to na_te.dros performed 2015-02-11 15:41:48
Subject Length Description Subject Range Query Range Score Percent Strand
X-element 4740 X-element ROXELEMENT 4740bp 2202..2293 532..627 129 61.5 Plus

BS14025.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:56 Download gff for BS14025.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4908-PA 1..622 17..638 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:21:02 Download gff for BS14025.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4908-RB 401..1030 9..638 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:12:37 Download gff for BS14025.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4908-RB 401..1030 9..638 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:12:37 Download gff for BS14025.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10223133..10223767 5..638 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:21:02 Download gff for BS14025.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10223133..10223767 5..638 99   Plus

BS14025.complete Sequence

1328 bp assembled on 2008-08-15

GenBank Submission: KX805456

> BS14025.complete
GAAGTTATCAGTCGACATGACTTTGCCCGATCTTGTAGCTGGACTTTCGT
CAAATCCCTACTTTGGTGCCGGTTTTGGACTATTTGGTGTGGGCGCCGCT
GCTGCCATATTGCGCAAGGGCCTCCAGGGCGGAGTGATACTGTTCCGGCG
GCACTGCATGATTACCCTGGAGGTGCCGTGTCGGGACAAATCCTATCAGT
GGCTGTTAAAATGGATTACGATCAGAGGAGCGCGAAAAACGCAACACTTG
AGCGTGGAGACAAACTTTGTGCAGAACGACAATGGCACAATCAAAACCAG
CTATGACTTCATACCCAGCATAGGCAAGCATCTGTTCCAGTACAAGGGCA
ATTGGATTCAGGTGGAGCGGACCAGGGAACAACAGACATTGGACCTTCAC
ATGGGTGTTCCTTGGGAGACAGTGACGCTTACAGCGTTTGGTAACAATAA
AGGTATATATTTCGATATCCTCGAAGAGGCTAGGCAGCTGGCTCTGGAGG
CCACAGAGGGCAAAACCGTGCTGTACACAGCGATGGGTGCGGAATGGAGA
CCCTTCGGACATCCGCGCAGAAGGCGTCCCACTGGATCGGTGGTGCTGGA
TCGCGGAACTTCGCAACGAATCATTGCCGACTGCCAGGACTTCATTAAGA
GCTCTCTGTGGTATACGCAACGTGGAATCCCCTACCGAAGAGGCTACCTT
CTGTACGGGCCACCTGGTTGTGGCAAGTCTAGCTTTATAACCGCCCTGGC
GGGCGAACTGGAGTACAGTGTCTGCCTGCTAAACCTATCCGAAAGAGGCC
TCACCGATGATCGACTCAATCATCTCCTGAATGTTGCGCCAGAGCAGAGT
ATCATTCTGCTGGAGGACATCGACGCAGCATTCGTCTCGCGCGAAGCTAC
TCCGCAGCAGAAATCCGCCTTTGACGGTCTCAACAGGATAACGTTCAGTG
GACTCCTAAATTGCTTGGACGGTGTGGGCTCCACGGAGGCCAGAATTGTC
TTCATGACAACAAACTACATTGACCGCCTCGATCCCGCCTTAGTTCGTCC
TGGTAGAATCGATTTAAAGGAATACATTGGCTATTGTACGCAATATCAGT
TGGAGGAGATGTTCAAGAACTTCTTCGCCAGCAGTGACACCACAAAAGCC
GAGGAGTTCGGAAAACGAGTGAATTCCTTTGGACGCTCCGCTAGTCCGGC
GCAAATTCAAGGCTTTTTCATGAAGCACAAACTGTCCTCGCCGCAAACTG
TTATTGATTCTTGTGAAGATATCTGGGAAAATGTTTTAGATCATAATAAA
AAGATTAATTAAAAGCTTTCTAGACCAT

BS14025.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:46:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG4908-RA 1296 CG4908-PA 1..1294 17..1310 6455 99.9 Plus
CG4908-RB 1296 CG4908-PB 1..1294 17..1310 6455 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4908-RA 1353 CG4908-RA 52..1345 17..1310 6455 99.9 Plus
CG4908-RB 1710 CG4908-RB 409..1702 17..1310 6455 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:46:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10223146..10224439 17..1310 6455 99.9 Plus
Blast to na_te.dros performed 2014-11-28 00:46:11
Subject Length Description Subject Range Query Range Score Percent Strand
X-element 4740 X-element ROXELEMENT 4740bp 2202..2293 532..627 129 61.5 Plus

BS14025.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:29:50 Download gff for BS14025.complete
Subject Subject Range Query Range Percent Splice Strand
CG4908-RA 51..1347 17..1313 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:12 Download gff for BS14025.complete
Subject Subject Range Query Range Percent Splice Strand
CG4908-RB 409..1702 17..1310 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:10:07 Download gff for BS14025.complete
Subject Subject Range Query Range Percent Splice Strand
CG4908-RA 51..1344 17..1310 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:35 Download gff for BS14025.complete
Subject Subject Range Query Range Percent Splice Strand
CG4908-RB 409..1702 17..1310 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:35 Download gff for BS14025.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10223146..10224439 17..1310 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:12 Download gff for BS14025.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10223146..10224439 17..1310 99   Plus

BS14025.pep Sequence

Translation from 16 to 1311

> BS14025.pep
MTLPDLVAGLSSNPYFGAGFGLFGVGAAAAILRKGLQGGVILFRRHCMIT
LEVPCRDKSYQWLLKWITIRGARKTQHLSVETNFVQNDNGTIKTSYDFIP
SIGKHLFQYKGNWIQVERTREQQTLDLHMGVPWETVTLTAFGNNKGIYFD
ILEEARQLALEATEGKTVLYTAMGAEWRPFGHPRRRRPTGSVVLDRGTSQ
RIIADCQDFIKSSLWYTQRGIPYRRGYLLYGPPGCGKSSFITALAGELEY
SVCLLNLSERGLTDDRLNHLLNVAPEQSIILLEDIDAAFVSREATPQQKS
AFDGLNRITFSGLLNCLDGVGSTEARIVFMTTNYIDRLDPALVRPGRIDL
KEYIGYCTQYQLEEMFKNFFASSDTTKAEEFGKRVNSFGRSASPAQIQGF
FMKHKLSSPQTVIDSCEDIWENVLDHNKKIN*

BS14025.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG4908-PA 431 CG4908-PA 1..431 1..431 2270 100 Plus
CG4908-PB 431 CG4908-PB 1..431 1..431 2270 100 Plus
CG2658-PC 819 CG2658-PC 358..529 208..372 200 33.1 Plus
CG2658-PA 819 CG2658-PA 358..529 208..372 200 33.1 Plus
Rpt6-PA 405 CG1489-PA 178..313 220..351 176 40.3 Plus