Clone Sequence Records
BS14026.3prime Sequence
469 bp (443 high quality bases) assembled on 2006-10-13
> BS14026.3prime
ATGGTCTAGAAAGCTTTTAGTACCTGCTGTTGTTAAACTGCGAATTGATG
GCCGTATTAACGGCCGAGGAGGCTGCTTCCTGGACGTGCTGGTTGCGCAG
AAACTCGGTGGTGAACTCCGCCTGGGCCTTGGCCATACTGGCCCCTGTGC
TGCGGTAGATCGAGTGAATCTTTGTGATCATCAGCACATTGGCCACGGCC
ACCGCTGTGAAACAGAATGCCACGTTCAACAGCAGAATGCCGACGATAAT
ACCCGACGCTTGCCCATCGAACTGCCCGATGGCCGTAATAAAGCCACAGT
AGCCCATCTTGTTGAAGCCCACCGCCTGCACAATCGAGTACAGCGTTTGA
AAGAAGTAGATGAAGAAGAAGACCATGAAGTTGAAGCTCGAATCGTTGCG
GAATGCCTTGTACGCCGGTCGGAACCAGCAGACATAGGAGGCGGGCGAGA
AGAGCATCGTGTAGAAGAT
BS14026.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:18:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9195-PA | 1032 | Scamp-RA | 580..1032 | 469..17 | 2265 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:02:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scamp-RD | 2813 | CG9195-RD | 1118..1570 | 469..17 | 2265 | 100 | Minus |
Scamp-RC | 2322 | CG9195-RC | 696..1148 | 469..17 | 2265 | 100 | Minus |
Scamp-RA | 2391 | CG9195-RA | 696..1148 | 469..17 | 2265 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:02:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15447422..15447831 | 17..426 | 2050 | 100 | Plus |
X | 23542271 | X | 15447893..15447938 | 424..469 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 19:02:40 has no hits.
BS14026.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:56 Download gff for
BS14026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9195-PA | 580..1032 | 17..469 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:09:06 Download gff for
BS14026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scamp-RA | 696..1148 | 17..469 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:56:05 Download gff for
BS14026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scamp-RA | 696..1148 | 17..469 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:56:05 Download gff for
BS14026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15447422..15447830 | 17..425 | 100 | <- | Plus |
X | 15447895..15447938 | 426..469 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:09:06 Download gff for
BS14026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15341455..15341863 | 17..425 | 100 | <- | Plus |
arm_X | 15341928..15341971 | 426..469 | 100 | | Plus |
BS14026.5prime Sequence
578 bp (470 high quality bases) assembled on 2006-10-13
> BS14026.5prime
GAAGTTATCAGTCGACATGTCCGGCTCCGGTCTCGACGAGAATCCCTTCG
GGGAGCCCAATCTGGACAATCCGTTTGCGGACCCCGCCATCCAGCAGGCA
CGACGACTCCAGAGCGGCGCCGCCCTTGTCTCTCTTGAGGATTACAATCC
ATTCGAGGAGCAGGCCAAGCCGCAGCTGCAGATCAACTCAACGAACACGG
CGGCGGTGGTCCAGCCGCTATCGCAGAACATTCCGCCCCCGCAGACCAGT
TCCCTGGGCGCCTCGGCGCCTAGCACCAGCATACAGATCACCTCGGAGGA
GCTGCAGCGCCGGCAGGAGGAGTTGGACCGCAAGGCCGCCGAACTGGACC
GCCGCGAGCAGCAGCTACAGGGCAATGTGCCGCAGCTGAACAACTGGCCA
CCGCTGCCGGATAACTTTTGTGTAAAGCCGTGCTTCTACCAGGACTTCGA
GGTGGAGATACCGCCCGAGTTCCAGAAACTGGTCAAGCGATTGTATTACA
TTTGGATTTTTTACACCATGACGTTGTTGGCCAACGTGATAGGCGGTCTA
ATTTTGCTGTTCCCCGCTGGCGAATTCA
BS14026.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:19:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9195-PA | 1032 | Scamp-RA | 1..561 | 17..577 | 2780 | 99.8 | Plus |
CG9195-PB | 339 | Scamp-RB | 1..291 | 17..307 | 1455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:24:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scamp-RC | 2322 | CG9195-RC | 116..677 | 16..577 | 2795 | 99.8 | Plus |
Scamp-RA | 2391 | CG9195-RA | 116..677 | 16..577 | 2795 | 99.8 | Plus |
Scamp-RD | 2813 | CG9195-RD | 116..407 | 16..307 | 1460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:24:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15449281..15449509 | 307..79 | 1145 | 100 | Minus |
X | 23542271 | X | 15448379..15448583 | 509..305 | 1025 | 100 | Minus |
X | 23542271 | X | 15447957..15448024 | 577..510 | 325 | 98.5 | Minus |
X | 23542271 | X | 15449704..15449768 | 80..16 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:24:34 has no hits.
BS14026.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:56 Download gff for
BS14026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9195-PA | 1..561 | 17..577 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:08:32 Download gff for
BS14026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scamp-RA | 113..677 | 12..577 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:11:55 Download gff for
BS14026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scamp-RA | 113..677 | 12..577 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:11:55 Download gff for
BS14026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15448379..15448580 | 308..509 | 100 | <- | Minus |
X | 15449281..15449508 | 80..307 | 100 | <- | Minus |
X | 15449705..15449771 | 12..79 | 97 | | Minus |
X | 15447957..15448024 | 510..577 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:08:32 Download gff for
BS14026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15341990..15342057 | 510..577 | 98 | <- | Minus |
arm_X | 15342412..15342613 | 308..509 | 100 | <- | Minus |
arm_X | 15343314..15343541 | 80..307 | 100 | <- | Minus |
arm_X | 15343738..15343804 | 12..79 | 97 | | Minus |
BS14026.complete Sequence
1064 bp assembled on 2008-08-14
GenBank Submission: KX800841
> BS14026.complete
GAAGTTATCAGTCGACATGTCCGGCTCCGGTCTCGACGAGAATCCCTTCG
GGGAGCCCAATCTGGACAATCCGTTTGCGGACCCCGCCATCCAGCAGGCA
CGACGACTCCAGAGCGGCGCCGCCCTTGTCTCTCTTGAGGATTACAATCC
ATTCGAGGAGCAGGCCAAGCCGCAGCTGCAGATCAACTCAACGAACACGG
CGGCGGTGGTCCAGCCGCTATCGCAGAACATTCCGCCCCCGCAGACCAGT
TCCCTGGGCGCCTCGGCGCCTAGCACCAGCATACAGATCACCTCGGAGGA
GCTGCAGCGCCGGCAGGAGGAGTTGGACCGCAAGGCCGCCGAACTGGACC
GCCGCGAGCAGCAGCTACAGGGCAATGTGCCGCAGCTGAACAACTGGCCA
CCGCTGCCGGATAACTTTTGTGTAAAGCCGTGCTTCTACCAGGACTTCGA
GGTGGAGATACCGCCCGAGTTCCAGAAACTGGTCAAGCGATTGTATTACA
TTTGGATTTTTTACACCATGACGTTGTTGGCCAACGTGATAGGCGGTCTA
ATTTTGCTGTTCCACGCTGGCGAATTCGAGACCTTCTTCCTGGCCATCTT
CTACACGATGCTCTTCTCGCCCGCCTCCTATGTCTGCTGGTTCCGACCGG
CGTACAAGGCATTCCGCAACGATTCGAGCTTCAACTTCATGGTCTTCTTC
TTCATCTACTTCTTTCAAACGCTGTACTCGATTGTGCAGGCGGTGGGCTT
CAACAAGATGGGCTACTGTGGCTTTATTACGGCCATCGGGCAGTTCGATG
GGCAAGCGTCGGGTATTATCGTCGGCATTCTGCTGTTGAACGTGGCATTC
TGTTTCACAGCGGTGGCCGTGGCCAATGTGCTGATGATCACAAAGATTCA
CTCGATCTACCGCAGCACAGGGGCCAGTATGGCCAAGGCCCAGGCGGAGT
TCACCACCGAGTTTCTGCGCAACCAGCACGTCCAGGAAGCAGCCTCCTCG
GCCGTTAATACGGCCATCAATTCGCAGTTTAACAACAGCAGGTACTAAAA
GCTTTCTAGACCAT
BS14026.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:35:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scamp-RC | 1032 | CG9195-PC | 1..1032 | 17..1048 | 5160 | 100 | Plus |
Scamp-RA | 1032 | CG9195-PA | 1..1032 | 17..1048 | 5160 | 100 | Plus |
Scamp-RD | 339 | CG9195-PD | 1..291 | 17..307 | 1455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:35:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scamp-RC | 2322 | CG9195-RC | 116..1148 | 16..1048 | 5165 | 100 | Plus |
Scamp-RA | 2391 | CG9195-RA | 116..1148 | 16..1048 | 5165 | 100 | Plus |
Scamp-RD | 2813 | CG9195-RD | 830..1570 | 308..1048 | 3705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:35:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15447422..15447831 | 1048..639 | 2050 | 100 | Minus |
X | 23542271 | X | 15449281..15449509 | 307..79 | 1145 | 100 | Minus |
X | 23542271 | X | 15448379..15448583 | 509..305 | 1025 | 100 | Minus |
X | 23542271 | X | 15447893..15448024 | 641..510 | 660 | 100 | Minus |
X | 23542271 | X | 15449704..15449768 | 80..16 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:35:07 has no hits.
BS14026.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:46:55 Download gff for
BS14026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scamp-RA | 119..1154 | 12..1048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:04:37 Download gff for
BS14026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scamp-RA | 117..1146 | 17..1046 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:13:39 Download gff for
BS14026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scamp-RA | 123..1152 | 17..1046 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:22:36 Download gff for
BS14026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scamp-RA | 117..1146 | 17..1046 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:22:36 Download gff for
BS14026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15447424..15447830 | 640..1046 | 100 | <- | Minus |
X | 15447895..15448024 | 510..639 | 100 | <- | Minus |
X | 15448379..15448580 | 308..509 | 100 | <- | Minus |
X | 15449281..15449508 | 80..307 | 100 | <- | Minus |
X | 15449705..15449767 | 17..79 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:04:37 Download gff for
BS14026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15342412..15342613 | 308..509 | 100 | <- | Minus |
arm_X | 15343314..15343541 | 80..307 | 100 | <- | Minus |
arm_X | 15343738..15343800 | 17..79 | 100 | | Minus |
arm_X | 15341457..15341863 | 640..1046 | 100 | <- | Minus |
arm_X | 15341928..15342057 | 510..639 | 100 | <- | Minus |
BS14026.pep Sequence
Translation from 16 to 1047
> BS14026.pep
MSGSGLDENPFGEPNLDNPFADPAIQQARRLQSGAALVSLEDYNPFEEQA
KPQLQINSTNTAAVVQPLSQNIPPPQTSSLGASAPSTSIQITSEELQRRQ
EELDRKAAELDRREQQLQGNVPQLNNWPPLPDNFCVKPCFYQDFEVEIPP
EFQKLVKRLYYIWIFYTMTLLANVIGGLILLFHAGEFETFFLAIFYTMLF
SPASYVCWFRPAYKAFRNDSSFNFMVFFFIYFFQTLYSIVQAVGFNKMGY
CGFITAIGQFDGQASGIIVGILLLNVAFCFTAVAVANVLMITKIHSIYRS
TGASMAKAQAEFTTEFLRNQHVQEAASSAVNTAINSQFNNSRY*
BS14026.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scamp-PC | 343 | CG9195-PC | 1..343 | 1..343 | 1780 | 100 | Plus |
Scamp-PA | 343 | CG9195-PA | 1..343 | 1..343 | 1780 | 100 | Plus |
Scamp-PD | 112 | CG9195-PD | 1..97 | 1..97 | 489 | 100 | Plus |