Clone BS14026 Report

Search the DGRC for BS14026

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:140
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptScamp-RA
Protein status:BS14026.pep: full length peptide match
Sequenced Size:1064

Clone Sequence Records

BS14026.3prime Sequence

469 bp (443 high quality bases) assembled on 2006-10-13

> BS14026.3prime
ATGGTCTAGAAAGCTTTTAGTACCTGCTGTTGTTAAACTGCGAATTGATG
GCCGTATTAACGGCCGAGGAGGCTGCTTCCTGGACGTGCTGGTTGCGCAG
AAACTCGGTGGTGAACTCCGCCTGGGCCTTGGCCATACTGGCCCCTGTGC
TGCGGTAGATCGAGTGAATCTTTGTGATCATCAGCACATTGGCCACGGCC
ACCGCTGTGAAACAGAATGCCACGTTCAACAGCAGAATGCCGACGATAAT
ACCCGACGCTTGCCCATCGAACTGCCCGATGGCCGTAATAAAGCCACAGT
AGCCCATCTTGTTGAAGCCCACCGCCTGCACAATCGAGTACAGCGTTTGA
AAGAAGTAGATGAAGAAGAAGACCATGAAGTTGAAGCTCGAATCGTTGCG
GAATGCCTTGTACGCCGGTCGGAACCAGCAGACATAGGAGGCGGGCGAGA
AGAGCATCGTGTAGAAGAT

BS14026.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:18:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG9195-PA 1032 Scamp-RA 580..1032 469..17 2265 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:02:41
Subject Length Description Subject Range Query Range Score Percent Strand
Scamp-RD 2813 CG9195-RD 1118..1570 469..17 2265 100 Minus
Scamp-RC 2322 CG9195-RC 696..1148 469..17 2265 100 Minus
Scamp-RA 2391 CG9195-RA 696..1148 469..17 2265 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:02:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15447422..15447831 17..426 2050 100 Plus
X 23542271 X 15447893..15447938 424..469 230 100 Plus
Blast to na_te.dros performed on 2015-02-11 19:02:40 has no hits.

BS14026.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:56 Download gff for BS14026.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9195-PA 580..1032 17..469 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:09:06 Download gff for BS14026.3prime
Subject Subject Range Query Range Percent Splice Strand
Scamp-RA 696..1148 17..469 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:56:05 Download gff for BS14026.3prime
Subject Subject Range Query Range Percent Splice Strand
Scamp-RA 696..1148 17..469 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:56:05 Download gff for BS14026.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15447422..15447830 17..425 100 <- Plus
X 15447895..15447938 426..469 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:09:06 Download gff for BS14026.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15341455..15341863 17..425 100 <- Plus
arm_X 15341928..15341971 426..469 100   Plus

BS14026.5prime Sequence

578 bp (470 high quality bases) assembled on 2006-10-13

> BS14026.5prime
GAAGTTATCAGTCGACATGTCCGGCTCCGGTCTCGACGAGAATCCCTTCG
GGGAGCCCAATCTGGACAATCCGTTTGCGGACCCCGCCATCCAGCAGGCA
CGACGACTCCAGAGCGGCGCCGCCCTTGTCTCTCTTGAGGATTACAATCC
ATTCGAGGAGCAGGCCAAGCCGCAGCTGCAGATCAACTCAACGAACACGG
CGGCGGTGGTCCAGCCGCTATCGCAGAACATTCCGCCCCCGCAGACCAGT
TCCCTGGGCGCCTCGGCGCCTAGCACCAGCATACAGATCACCTCGGAGGA
GCTGCAGCGCCGGCAGGAGGAGTTGGACCGCAAGGCCGCCGAACTGGACC
GCCGCGAGCAGCAGCTACAGGGCAATGTGCCGCAGCTGAACAACTGGCCA
CCGCTGCCGGATAACTTTTGTGTAAAGCCGTGCTTCTACCAGGACTTCGA
GGTGGAGATACCGCCCGAGTTCCAGAAACTGGTCAAGCGATTGTATTACA
TTTGGATTTTTTACACCATGACGTTGTTGGCCAACGTGATAGGCGGTCTA
ATTTTGCTGTTCCCCGCTGGCGAATTCA

BS14026.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:19:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG9195-PA 1032 Scamp-RA 1..561 17..577 2780 99.8 Plus
CG9195-PB 339 Scamp-RB 1..291 17..307 1455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:24:36
Subject Length Description Subject Range Query Range Score Percent Strand
Scamp-RC 2322 CG9195-RC 116..677 16..577 2795 99.8 Plus
Scamp-RA 2391 CG9195-RA 116..677 16..577 2795 99.8 Plus
Scamp-RD 2813 CG9195-RD 116..407 16..307 1460 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:24:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15449281..15449509 307..79 1145 100 Minus
X 23542271 X 15448379..15448583 509..305 1025 100 Minus
X 23542271 X 15447957..15448024 577..510 325 98.5 Minus
X 23542271 X 15449704..15449768 80..16 325 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:24:34 has no hits.

BS14026.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:56 Download gff for BS14026.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9195-PA 1..561 17..577 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:08:32 Download gff for BS14026.5prime
Subject Subject Range Query Range Percent Splice Strand
Scamp-RA 113..677 12..577 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:11:55 Download gff for BS14026.5prime
Subject Subject Range Query Range Percent Splice Strand
Scamp-RA 113..677 12..577 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:11:55 Download gff for BS14026.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15448379..15448580 308..509 100 <- Minus
X 15449281..15449508 80..307 100 <- Minus
X 15449705..15449771 12..79 97   Minus
X 15447957..15448024 510..577 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:08:32 Download gff for BS14026.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15341990..15342057 510..577 98 <- Minus
arm_X 15342412..15342613 308..509 100 <- Minus
arm_X 15343314..15343541 80..307 100 <- Minus
arm_X 15343738..15343804 12..79 97   Minus

BS14026.complete Sequence

1064 bp assembled on 2008-08-14

GenBank Submission: KX800841

> BS14026.complete
GAAGTTATCAGTCGACATGTCCGGCTCCGGTCTCGACGAGAATCCCTTCG
GGGAGCCCAATCTGGACAATCCGTTTGCGGACCCCGCCATCCAGCAGGCA
CGACGACTCCAGAGCGGCGCCGCCCTTGTCTCTCTTGAGGATTACAATCC
ATTCGAGGAGCAGGCCAAGCCGCAGCTGCAGATCAACTCAACGAACACGG
CGGCGGTGGTCCAGCCGCTATCGCAGAACATTCCGCCCCCGCAGACCAGT
TCCCTGGGCGCCTCGGCGCCTAGCACCAGCATACAGATCACCTCGGAGGA
GCTGCAGCGCCGGCAGGAGGAGTTGGACCGCAAGGCCGCCGAACTGGACC
GCCGCGAGCAGCAGCTACAGGGCAATGTGCCGCAGCTGAACAACTGGCCA
CCGCTGCCGGATAACTTTTGTGTAAAGCCGTGCTTCTACCAGGACTTCGA
GGTGGAGATACCGCCCGAGTTCCAGAAACTGGTCAAGCGATTGTATTACA
TTTGGATTTTTTACACCATGACGTTGTTGGCCAACGTGATAGGCGGTCTA
ATTTTGCTGTTCCACGCTGGCGAATTCGAGACCTTCTTCCTGGCCATCTT
CTACACGATGCTCTTCTCGCCCGCCTCCTATGTCTGCTGGTTCCGACCGG
CGTACAAGGCATTCCGCAACGATTCGAGCTTCAACTTCATGGTCTTCTTC
TTCATCTACTTCTTTCAAACGCTGTACTCGATTGTGCAGGCGGTGGGCTT
CAACAAGATGGGCTACTGTGGCTTTATTACGGCCATCGGGCAGTTCGATG
GGCAAGCGTCGGGTATTATCGTCGGCATTCTGCTGTTGAACGTGGCATTC
TGTTTCACAGCGGTGGCCGTGGCCAATGTGCTGATGATCACAAAGATTCA
CTCGATCTACCGCAGCACAGGGGCCAGTATGGCCAAGGCCCAGGCGGAGT
TCACCACCGAGTTTCTGCGCAACCAGCACGTCCAGGAAGCAGCCTCCTCG
GCCGTTAATACGGCCATCAATTCGCAGTTTAACAACAGCAGGTACTAAAA
GCTTTCTAGACCAT

BS14026.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
Scamp-RC 1032 CG9195-PC 1..1032 17..1048 5160 100 Plus
Scamp-RA 1032 CG9195-PA 1..1032 17..1048 5160 100 Plus
Scamp-RD 339 CG9195-PD 1..291 17..307 1455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:35:10
Subject Length Description Subject Range Query Range Score Percent Strand
Scamp-RC 2322 CG9195-RC 116..1148 16..1048 5165 100 Plus
Scamp-RA 2391 CG9195-RA 116..1148 16..1048 5165 100 Plus
Scamp-RD 2813 CG9195-RD 830..1570 308..1048 3705 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:35:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15447422..15447831 1048..639 2050 100 Minus
X 23542271 X 15449281..15449509 307..79 1145 100 Minus
X 23542271 X 15448379..15448583 509..305 1025 100 Minus
X 23542271 X 15447893..15448024 641..510 660 100 Minus
X 23542271 X 15449704..15449768 80..16 325 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:35:07 has no hits.

BS14026.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:46:55 Download gff for BS14026.complete
Subject Subject Range Query Range Percent Splice Strand
Scamp-RA 119..1154 12..1048 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:04:37 Download gff for BS14026.complete
Subject Subject Range Query Range Percent Splice Strand
Scamp-RA 117..1146 17..1046 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:13:39 Download gff for BS14026.complete
Subject Subject Range Query Range Percent Splice Strand
Scamp-RA 123..1152 17..1046 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:22:36 Download gff for BS14026.complete
Subject Subject Range Query Range Percent Splice Strand
Scamp-RA 117..1146 17..1046 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:22:36 Download gff for BS14026.complete
Subject Subject Range Query Range Percent Splice Strand
X 15447424..15447830 640..1046 100 <- Minus
X 15447895..15448024 510..639 100 <- Minus
X 15448379..15448580 308..509 100 <- Minus
X 15449281..15449508 80..307 100 <- Minus
X 15449705..15449767 17..79 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:04:37 Download gff for BS14026.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15342412..15342613 308..509 100 <- Minus
arm_X 15343314..15343541 80..307 100 <- Minus
arm_X 15343738..15343800 17..79 100   Minus
arm_X 15341457..15341863 640..1046 100 <- Minus
arm_X 15341928..15342057 510..639 100 <- Minus

BS14026.pep Sequence

Translation from 16 to 1047

> BS14026.pep
MSGSGLDENPFGEPNLDNPFADPAIQQARRLQSGAALVSLEDYNPFEEQA
KPQLQINSTNTAAVVQPLSQNIPPPQTSSLGASAPSTSIQITSEELQRRQ
EELDRKAAELDRREQQLQGNVPQLNNWPPLPDNFCVKPCFYQDFEVEIPP
EFQKLVKRLYYIWIFYTMTLLANVIGGLILLFHAGEFETFFLAIFYTMLF
SPASYVCWFRPAYKAFRNDSSFNFMVFFFIYFFQTLYSIVQAVGFNKMGY
CGFITAIGQFDGQASGIIVGILLLNVAFCFTAVAVANVLMITKIHSIYRS
TGASMAKAQAEFTTEFLRNQHVQEAASSAVNTAINSQFNNSRY*

BS14026.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
Scamp-PC 343 CG9195-PC 1..343 1..343 1780 100 Plus
Scamp-PA 343 CG9195-PA 1..343 1..343 1780 100 Plus
Scamp-PD 112 CG9195-PD 1..97 1..97 489 100 Plus