Clone BS14028 Report

Search the DGRC for BS14028

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:140
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptObp57c-RA
Protein status:BS14028.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14028.3prime Sequence

480 bp (480 high quality bases) assembled on 2006-10-13

> BS14028.3prime
ATGGTCTAGAAAGCTTTTATTCGTTTAATTTGTTTGTATTTTTACCCGCT
TCGGTGACCTCATCGCTCTGCTCGAAGCTTTCAGTTAGACAAGTCACCAT
CTTAAACGCATATTCGCAATGATCTTCTTCCTCATCGTAGATTTTCTTGC
AATCGTAGAGTATCTCTCGCAGTTCATCGCTCACGGGCTCAATTTGATCA
ATTTTATCCACATCCAAATAGCCATTGGTATCCAAAAGATTTCCCTTCTC
CGCTAGGCAATGGATGAAGCATTTGTATCTTCTGTCGGTATTCTCGAGGT
CATCCTCTTCGGAGCTGTTGCGATCGATGAGTTCCTGGAATTCAGCCTGG
CTGATGTTATTGCTGGCCAGGCAATCTGACACGTAATTGGTTTCCTCCAG
AAGTGAGAGACTCTGTATGGAGACCACGCTGACAGTCAAGATACATATTA
GCCATAGCTTAAGCATGTCGACTGATAACT

BS14028.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG13421-PA 450 Obp57c-RA 1..450 466..17 2250 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
Obp57c-RA 557 CG13421-RA 84..533 466..17 2250 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20503781..20504178 414..17 1990 100 Minus
2R 25286936 2R 20503667..20503720 466..413 270 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:43:38 has no hits.

BS14028.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:58 Download gff for BS14028.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13421-PA 1..450 17..466 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:42 Download gff for BS14028.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp57c-RA 84..533 17..466 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:45:11 Download gff for BS14028.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp57c-RA 84..533 17..466 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:45:11 Download gff for BS14028.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20503667..20503720 413..466 100 -> Minus
2R 20503783..20504178 17..412 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:42 Download gff for BS14028.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16391172..16391225 413..466 100 -> Minus
arm_2R 16391288..16391683 17..412 100   Minus

BS14028.5prime Sequence

480 bp (480 high quality bases) assembled on 2006-10-13

> BS14028.5prime
GAAGTTATCAGTCGACATGCTTAAGCTATGGCTAATATGTATCTTGACTG
TCAGCGTGGTCTCCATACAGAGTCTCTCACTTCTGGAGGAAACCAATTAC
GTGTCAGATTGCCTGGCCAGCAATAACATCAGCCAGGCTGAATTCCAGGA
ACTCATCGATCGCAACAGCTCCGAAGAGGATGACCTCGAGAATACCGACA
GAAGATACAAATGCTTCATCCATTGCCTAGCGGAGAAGGGAAATCTTTTG
GATACCAATGGCTATTTGGATGTGGATAAAATTGATCAAATTGAGCCCGT
GAGCGATGAACTGCGAGAGATACTCTACGATTGCAAGAAAATCTACGATG
AGGAAGAAGATCATTGCGAATATGCGTTTAAGATGGTGACTTGTCTAACT
GAAAGCTTCGAGCAGAGCGATGAGGTCACCGAAGCGGGTAAAAATACAAA
CAAATTAAACGAATAAAAGCTTTCTAGACC

BS14028.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG13421-PA 450 Obp57c-RA 1..450 17..466 2250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:30:49
Subject Length Description Subject Range Query Range Score Percent Strand
Obp57c-RA 557 CG13421-RA 84..533 17..466 2250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:30:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20503781..20504178 69..466 1990 100 Plus
2R 25286936 2R 20503667..20503720 17..70 270 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:30:45 has no hits.

BS14028.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:58 Download gff for BS14028.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13421-PA 1..450 17..466 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:47 Download gff for BS14028.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp57c-RA 84..533 17..466 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:16:00 Download gff for BS14028.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp57c-RA 84..533 17..466 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:16:00 Download gff for BS14028.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20503667..20503720 17..70 100 -> Plus
2R 20503783..20504178 71..466 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:47 Download gff for BS14028.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16391172..16391225 17..70 100 -> Plus
arm_2R 16391288..16391683 71..466 100   Plus

BS14028.complete Sequence

482 bp assembled on 2006-11-01

> BS14028.complete
GAAGTTATCAGTCGACATGCTTAAGCTATGGCTAATATGTATCTTGACTG
TCAGCGTGGTCTCCATACAGAGTCTCTCACTTCTGGAGGAAACCAATTAC
GTGTCAGATTGCCTGGCCAGCAATAACATCAGCCAGGCTGAATTCCAGGA
ACTCATCGATCGCAACAGCTCCGAAGAGGATGACCTCGAGAATACCGACA
GAAGATACAAATGCTTCATCCATTGCCTAGCGGAGAAGGGAAATCTTTTG
GATACCAATGGCTATTTGGATGTGGATAAAATTGATCAAATTGAGCCCGT
GAGCGATGAACTGCGAGAGATACTCTACGATTGCAAGAAAATCTACGATG
AGGAAGAAGATCATTGCGAATATGCGTTTAAGATGGTGACTTGTCTAACT
GAAAGCTTCGAGCAGAGCGATGAGGTCACCGAAGCGGGTAAAAATACAAA
CAAATTAAACGAATAAAAGCTTTCTAGACCAT

BS14028.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
Obp57c-RA 450 CG13421-PA 1..450 17..466 2250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
Obp57c-RA 557 CG13421-RA 84..533 17..466 2250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20503781..20504178 69..466 1990 100 Plus
2R 25286936 2R 20503667..20503720 17..70 270 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:55:25 has no hits.

BS14028.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:14 Download gff for BS14028.complete
Subject Subject Range Query Range Percent Splice Strand
Obp57c-RB 1..450 17..466 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:32 Download gff for BS14028.complete
Subject Subject Range Query Range Percent Splice Strand
Obp57c-RB 53..502 17..466 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:27 Download gff for BS14028.complete
Subject Subject Range Query Range Percent Splice Strand
Obp57c-RA 84..531 17..464 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:14 Download gff for BS14028.complete
Subject Subject Range Query Range Percent Splice Strand
Obp57c-RB 53..502 17..466 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:07 Download gff for BS14028.complete
Subject Subject Range Query Range Percent Splice Strand
Obp57c-RA 84..531 17..464 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:07 Download gff for BS14028.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20503667..20503720 17..70 100 -> Plus
2R 20503783..20504176 71..464 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:27 Download gff for BS14028.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16391172..16391225 17..70 100 -> Plus
arm_2R 16391288..16391681 71..464 100   Plus

BS14028.pep Sequence

Translation from 16 to 465

> BS14028.pep
MLKLWLICILTVSVVSIQSLSLLEETNYVSDCLASNNISQAEFQELIDRN
SSEEDDLENTDRRYKCFIHCLAEKGNLLDTNGYLDVDKIDQIEPVSDELR
EILYDCKKIYDEEEDHCEYAFKMVTCLTESFEQSDEVTEAGKNTNKLNE*

BS14028.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:00:22
Subject Length Description Subject Range Query Range Score Percent Strand
Obp57c-PA 149 CG13421-PA 1..149 1..149 777 100 Plus