Clone Sequence Records
BS14030.complete Sequence
1487 bp assembled on 2009-12-07
GenBank Submission: KX802069
> BS14030.complete
GAAGTTATCAGTCGACATGGATAACAGTAGCGGTCAAAACAGCAGAACGG
CTTCGTCAGCGTCCACAAGCAAAATAGTCAACTATTCGTCACCAGTCTCG
CCAGGAGTCGCAGCCGCCACCTCCTCATCCTCATCATCCAGCAGCAGCGG
CATGAGTAGCAGCCAGGAGGACACCGTACTGGGATTATTTACGCCCAAAA
AGGAGTTCCCCAATGCCAAGATGCTGCAGACCATCAGGGAGAAGCTAATG
ACGCCCGGCGGAGCCTGTGACCTTCTGGCCCTGGGCATCGCAGCGGAACC
CACAGACCAGCAGCCCGTCAAGCTCATCCAACAGCGTTATCTGATCAGCG
CACAGCCTAGTCACATATCGGCCGCCGTGGCTGCCAAGACTCCCGCCTCG
TATCGCCACTTGGTCGATCTAACCGCCTCCAATCTGCGCTGCGTGGACAT
CTTCACCGGGGAGCAGTTCCTCTGCCGTATTGTAAACGAACCGTTGCATA
AGGTGCAACGAGCCTACTTTCAGCTGCAGCAGCACGACGAGGAGCTACGC
CGGAGCACCATCTATGGCCATCCACTGATCCGACCCGTGCACGATATCAT
ACCGCTTACCAAGGATCGCACCTACATCCTCATTGCGCCCGTGCCCCAGG
AGAGGGACTCCACGGGTGGGGTGACCGGGGTGTACGAGAACCTGCACACC
TACATCCGCCACGCGAAGCGACTGTGCGAGACGGAGGCGAGGGCCATATT
CCACCAGATCTGTCAGACTGTTCAGGTGTGCCACCGCAACGGGATTATCC
TCAGGGACCTCAAGCTCAAGCGGTTCTACTTCATCGACGAGGCCAGAACG
AAACTGCAGTATGAATCACTGGAAGGCTCAATGATCCTCGACGGCGAGGA
CGATACTCTGAGCGACAAGATCGGTTGCCCACTGTACACCGCTCCAGAAC
TGCTGTGCCCCCAGCAAACGTACAAGGGCAAACCGGCGGACATGTGGTCG
CTGGGCGTGATCCTGTACACCATGTTGGTGGGTCAGTACCCGTTCTACGA
GAAGGCCAACTGCAACCTCATCACCGTCATACGCCACGGGAATGTCCAGA
TACCCCTGACGCTGTCTAAGTCGGTGCGATGGCTGTTGCTTTCGCTGCTG
CGGAAGGATTACACGGAACGAATGACCGCCAGCCACATCTTCCTTACCCC
GTGGCTGCGAGAGCAGCGCCCCTTCCACATGTACCTGCCAGTCGACGTGG
AGGTGGCCGAGGACTGGAGCGATGCGGAGGAGGACGAAGGCACTGCCGCC
GATGCGATGGATGATGACGAGGAAGGACTCTGTCCCTTGGGTGACAAGCA
CGAGTACGAGGACATTGGCGTGGAGCCATTGGACTACACGCGCTCCACGC
TCCAAATGGCTCAGAATGCCAATGGGCTGTCCACGGAACCCGAACCCGAT
ACGGATGTGGACATGGGCTGAAAGCTTTCTAGACCAT
BS14030.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:14:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trbl-RA | 1455 | CG5408-PA | 1..1455 | 17..1471 | 7275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:14:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trbl-RA | 2372 | CG5408-RA | 354..1809 | 16..1471 | 7280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:14:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20400426..20401256 | 846..16 | 4155 | 100 | Minus |
| 3L | 28110227 | 3L | 20396851..20397478 | 1471..844 | 3140 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:14:18 has no hits.
BS14030.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:16 Download gff for
BS14030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trbl-RA | 354..1807 | 17..1470 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:09:23 Download gff for
BS14030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trbl-RA | 355..1808 | 17..1470 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:01 Download gff for
BS14030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trbl-RA | 354..1807 | 17..1470 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:02 Download gff for
BS14030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trbl-RA | 355..1808 | 17..1470 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:02 Download gff for
BS14030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20396852..20397475 | 847..1470 | 100 | <- | Minus |
| 3L | 20400426..20401255 | 17..846 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:09:23 Download gff for
BS14030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20389952..20390575 | 847..1470 | 100 | <- | Minus |
| arm_3L | 20393526..20394355 | 17..846 | 100 | | Minus |
BS14030.3prime Sequence
544 bp (474 high quality bases) assembled on 2006-10-13
> BS14030.3prime
ATGGTCTAGAAAGCTTTCAGCCCATGTCCACATCCGTATCGGGTTCGGGT
TCCGTGGACAGCCCATTGGCATTCTGAGCCATTTGGAGCGTGGAGCGCGT
GTAGTCCAATGGCTCCACGCCAATGTCCTCGTACTCGTGCTTGTCACCCA
AGGGACAGAGTCCTTCCTCGTCATCATCCATCGCATCGGCGGCAGTGCCT
TCGTCCTCCTCCGCATCGCTCCAGTCCTCGGCCACCTCCACGTCGACTGG
CAGGTACATGTGGAAGGGGCGCTGCTCTCGCAGCCACGGGGTAAGGAAGA
TGTGGCTGGCGGTCATTCGTTCCGTGTAATCCTTCCGCAGCAGCGAAAGC
AACAGCCATCGCACCGACTTAGACAGCGTCAGGGGTATCTGGACATTCCC
GTGGCGTATGACGGTGATGAGGTTGCAGTTGGCCTTCTCGTAGAACGGGT
ACTGACCCACCAACATGGTGTACAGGATCACGCCCAGCGACCACATGTCC
GCCGGTTTGGCCTTTGTCGTTTGCTGGGGGGACAGCAGTTCTGG
BS14030.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:19:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5408-PA | 1455 | trbl-RA | 963..1455 | 509..17 | 2465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:55:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trbl-RA | 2372 | CG5408-RA | 1282..1809 | 544..17 | 2565 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:55:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20396851..20397378 | 17..544 | 2565 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:55:50 has no hits.
BS14030.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:58 Download gff for
BS14030.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5408-PA | 928..1455 | 17..544 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:41:15 Download gff for
BS14030.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trbl-RA | 1282..1809 | 17..544 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:59:21 Download gff for
BS14030.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trbl-RA | 1282..1809 | 17..544 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:59:21 Download gff for
BS14030.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20396851..20397378 | 17..544 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:41:15 Download gff for
BS14030.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20389951..20390478 | 17..544 | 99 | | Plus |
BS14030.5prime Sequence
656 bp (481 high quality bases) assembled on 2006-10-13
> BS14030.5prime
GAAGTTATCAGTCGACATGGATAACAGTAGCGGTCAAAACAGCAGAACGG
CTTCGTCAGCGTCCACAAGCAAAATAGTCAACTATTCGTCACCAGTCTCG
CCAGGAGTCGCAGCCGCCACCTCCTCATCCTCATCATCCAGCAGCAGCGG
CATGAGTAGCAGCCAGGAGGACACCGTACTGGGATTATTTACGCCCAAAA
AGGAGTTCCCCAATGCCAAGATGCTGCAGACCATCAGGGAGAAGCTAATG
ACGCCCGGCGGAGCCTGTGACCTTCTGGCCCTGGGCATCGCAGCGGAACC
CACAGACCAGCAGCCCGTCAAGCTCATCCAACAGCGTTATCTGATCAGCG
CACAGCCTAGTCACATATCGGCCGCCGTGGCTGCCAAGACTCCCGCCTCG
TATCGCCACTTGGTCGATCTAACCGCCTCCAATCTGCGCTGCGTGGACAT
CTTCACCGGGGAGCAGTTCCTCTGCCGTATTGTAAACGAACCGTTGCATA
AGGTGCAACGAGCCTACTTTCAGCTGCAGCAGCACGACGAGGAGCTACGC
CGGAGCACCATCTATGGCCATCCACTGATCCGACCCGTGCACGATATCAT
ACCGCTTAACAAGGATCGCCACTACATCCTCATTGCGCCCGGGCCCCAGG
AAAGGG
BS14030.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:19:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5408-PA | 1455 | trbl-RA | 1..635 | 17..651 | 3075 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:55:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trbl-RA | 2372 | CG5408-RA | 354..994 | 16..656 | 3130 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:55:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20400616..20401256 | 656..16 | 3130 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:55:19 has no hits.
BS14030.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:59 Download gff for
BS14030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5408-PA | 1..640 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:50:47 Download gff for
BS14030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trbl-RA | 348..994 | 10..656 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:15:52 Download gff for
BS14030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trbl-RA | 348..994 | 10..656 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:15:52 Download gff for
BS14030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20400616..20401262 | 10..656 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:50:47 Download gff for
BS14030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20393716..20394362 | 10..656 | 98 | | Minus |
BS14030.pep Sequence
Translation from 16 to 1470
> BS14030.pep
MDNSSGQNSRTASSASTSKIVNYSSPVSPGVAAATSSSSSSSSSGMSSSQ
EDTVLGLFTPKKEFPNAKMLQTIREKLMTPGGACDLLALGIAAEPTDQQP
VKLIQQRYLISAQPSHISAAVAAKTPASYRHLVDLTASNLRCVDIFTGEQ
FLCRIVNEPLHKVQRAYFQLQQHDEELRRSTIYGHPLIRPVHDIIPLTKD
RTYILIAPVPQERDSTGGVTGVYENLHTYIRHAKRLCETEARAIFHQICQ
TVQVCHRNGIILRDLKLKRFYFIDEARTKLQYESLEGSMILDGEDDTLSD
KIGCPLYTAPELLCPQQTYKGKPADMWSLGVILYTMLVGQYPFYEKANCN
LITVIRHGNVQIPLTLSKSVRWLLLSLLRKDYTERMTASHIFLTPWLREQ
RPFHMYLPVDVEVAEDWSDAEEDEGTAADAMDDDEEGLCPLGDKHEYEDI
GVEPLDYTRSTLQMAQNANGLSTEPEPDTDVDMG*
BS14030.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:47:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trbl-PA | 484 | CG5408-PA | 1..484 | 1..484 | 2524 | 100 | Plus |
| AMPKalpha-PC | 582 | CG3051-PC | 76..307 | 176..421 | 230 | 30.1 | Plus |
| AMPKalpha-PB | 582 | CG3051-PB | 76..307 | 176..421 | 230 | 30.1 | Plus |
| AMPKalpha-PA | 582 | CG3051-PA | 76..307 | 176..421 | 230 | 30.1 | Plus |
| CG8485-PC | 860 | CG8485-PC | 40..274 | 145..398 | 221 | 27.7 | Plus |
