Clone BS14031 Report

Search the DGRC for BS14031

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:140
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptCG17572-RA
Protein status:BS14031.pep: full length peptide match
Sequenced Size:1190

Clone Sequence Records

BS14031.3prime Sequence

451 bp (381 high quality bases) assembled on 2006-10-13

> BS14031.3prime
ATGGTCTAGAAAGCTTCTACTCCGGCGGCGTGTTGTCGTGAATCCACTCG
GAAAAGTGGGCCACGGATGTGTAGACACTCGGGATGCGCAGACCGCCGCA
GTTATCAGATCCAAAGGACATGATGCCGATCTGTGAAAAGATGCCGTTCT
CTTGTATGAAAAGCGGTGCTCCGCCGAATCCTTGGCAGACGTCCTTGCCC
TCGCCGCCGGCGCACATCCATTGACCCTCGATGGAGTTGGGCGATTCCAG
GGCACCCGTGGAGCCGTAGTTGCGCAGGCACAGGTCCCAGCTGGTCAGCG
GCACGTCCAGATGCGACATCTCCGGCTGGCGGACACTCGACGTGGACATC
TTGCCCCAACCGGCGATGGTAGCCCGTTTGCCCCCCACCAGGTTGGCGCG
TGTCTTCTGCAGGCAGATGGGCTGTGTAGCCACCGAATAGTTTAGCGGGC
G

BS14031.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:19:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG17572-PA 1158 CG17572-RA 727..1158 448..17 2135 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:37:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG17572-RA 1344 CG17572-RA 852..1284 448..16 2150 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:37:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19071424..19071726 131..433 1500 99.7 Plus
2L 23513712 2L 19071191..19071310 16..135 600 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:37:12 has no hits.

BS14031.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:00 Download gff for BS14031.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17572-PA 725..1158 17..451 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:16:48 Download gff for BS14031.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17572-RA 850..1286 12..451 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:25:32 Download gff for BS14031.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17572-RA 850..1286 12..451 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:25:32 Download gff for BS14031.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19071189..19071305 12..130 98 <- Plus
2L 19071424..19071725 131..432 99 <- Plus
2L 19072831..19072848 433..451 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:16:48 Download gff for BS14031.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19071189..19071305 12..130 98 <- Plus
arm_2L 19071424..19071725 131..432 99 <- Plus
arm_2L 19072831..19072848 433..451 94   Plus

BS14031.5prime Sequence

475 bp (458 high quality bases) assembled on 2006-10-13

> BS14031.5prime
GAAGTTATCAGTCGACATGTACGCGTTAACAATACTTTTACCAATTTTGC
AACTATTTGCAATCGTTCGAGCGGAATCGGGAGAATTCGAGAAACTCCTG
GTGCCCGTGAGCCACGGAAGCGCAGAGCAAAGGAGCGGAGCACGGAGCAA
CGAGACTACTGGACACTCGGTGGCCGCCCGCTCCTACTACGACGTGGTGC
AAAACGCCGGACAGACGGGCTGCTCCGTGGGCACCGAGTGCACCCCGCTC
CACGACTGCACCGCCCTGATCTACGAGGTTGCCCGGAGTTGCTACTACGG
CGACAAGTCGCTCTACTGCGGCGGATCCAGCGAGGAGCTGCCCTACGTCT
GCTGCCCCAGCAGTCCGTTGGAGAAGAACCAGGTGTGCGGCAAGTCACTG
GTCCAGGGGCACTTCTACAAGGGACTGGGCTCCTATCCCTTTGTCGCGCG
CATCGGCTTCAAACATGTCAACACT

BS14031.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:19:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG17572-PA 1158 CG17572-RA 1..459 17..475 2295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:41:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG17572-RA 1344 CG17572-RA 126..584 17..475 2295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:41:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19073308..19073683 464..89 1880 100 Minus
2L 23513712 2L 19073952..19074024 89..17 365 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:41:53 has no hits.

BS14031.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:00 Download gff for BS14031.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17572-PA 1..459 17..475 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:21:04 Download gff for BS14031.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17572-RA 121..584 10..475 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:12:45 Download gff for BS14031.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17572-RA 121..584 10..475 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:12:45 Download gff for BS14031.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19073299..19073682 90..475 98 <- Minus
2L 19073952..19074029 10..89 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:21:04 Download gff for BS14031.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19073299..19073682 90..475 98 <- Minus
arm_2L 19073952..19074029 10..89 95   Minus

BS14031.complete Sequence

1190 bp assembled on 2009-08-24

GenBank Submission: KX802232

> BS14031.complete
GAAGTTATCAGTCGACATGTACGCGTTAACAATACTTTTACCAATTTTGC
AACTATTTGCAATCGTTCGAGCGGAATCGGGAGAATTCGAGAAACTCCTG
GTGCCCGTGAGCCACGGAAGCGCAGAGCAAAGGAGCGGAGCACGGAGCAA
CGAGACTACTGGACACTCGGTGGCCGCCCGCTCCTACTACGACGTGGTGC
AAAACGCCGGACAGACGGGCTGCTCCGTGGGCACCGAGTGCACCCCGCTC
CACGACTGCACCGCCCTGATCTACGAGGTTGCCCGGAGTTGCTACTACGG
CGACAAGTCGCTCTACTGCGGCGGATCCAGCGAGGAGCTGCCCTACGTCT
GCTGCCCCAGCAGTCCGTTGGAGAAGAACCAGGTGTGCGGCAAGTCACTG
GTCCAGGGGCACTTCTACAAGGGACTGGGCTCCTATCCCTTTGTCGCGCG
CATCGGCTTCAAACATGTCAACACTGGAGCTTTTGCTTATCCGTGTGCCG
GAGCCGTAATTGCCCGCCGGGTCATCCTCACGGCCGCCCATTGCGCTCTG
GCCAAGGCCGATGGACACCGACTGTCATCGGTGCGCGTGGGCGAGTACGA
TACTAGTAGCGATCCGGACTGCGCCAACACCGGATTCTGTGCACCGCGGT
CGGTCAACCACGCCATCAGCCATGTGATCGTGCATCCCGACTACAAGCAG
GGCCAGTATCACCATGACATTGCTCTGCTGGTGCTTAAAACGCCGCTAAA
CTATTCGGTGGCTACACAGCCCATCTGCCTGCAGAAGACACGCGCCAACC
TGGTGGTGGGCAAACGGGCTACCATCGCCGGTTGGGGCAAGATGTCCACG
TCGAGTGTCCGCCAGCCGGAGATGTCGCATCTGGACGTGCCGCTGACCAG
CTGGGACCTGTGCCTGCGCAACTACGGCTCCACGGGTGCCCTGGAATCGC
CCAACTCCATCGAGGGTCAATGGATGTGCGCCGGCGGCGAGGGCAAGGAC
GTCTGCCAAGGATTCGGCGGAGCACCGCTTTTCATACAAGAGAACGGCAT
CTTTTCACAGATCGGCATCATGTCCTTTGGATCTGATAACTGCGGCGGTC
TGCGCATCCCGAGTGTCTACACATCCGTGGCCCACTTTTCCGAGTGGATT
CACGACAACACGCCGCCGGAGTAGAAGCTTTCTAGACCAT

BS14031.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG17572-RA 1158 CG17572-PA 1..1158 17..1174 5790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG17572-RA 1344 CG17572-RA 126..1284 17..1175 5795 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19073308..19073683 464..89 1880 100 Minus
2L 23513712 2L 19071424..19071726 1060..758 1515 100 Minus
2L 23513712 2L 19072831..19073015 758..574 925 100 Minus
2L 23513712 2L 19071191..19071310 1175..1056 600 100 Minus
2L 23513712 2L 19073104..19073214 575..465 555 100 Minus
2L 23513712 2L 19073952..19074024 89..17 365 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:28:47 has no hits.

BS14031.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:51 Download gff for BS14031.complete
Subject Subject Range Query Range Percent Splice Strand
CG17572-RA 123..1280 17..1174 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:47 Download gff for BS14031.complete
Subject Subject Range Query Range Percent Splice Strand
CG17572-RA 126..1283 17..1174 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:31 Download gff for BS14031.complete
Subject Subject Range Query Range Percent Splice Strand
CG17572-RA 126..1283 17..1174 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:31 Download gff for BS14031.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19071192..19071305 1061..1174 100 <- Minus
2L 19071424..19071725 759..1060 100 <- Minus
2L 19072831..19073015 574..758 100 <- Minus
2L 19073106..19073214 465..573 100 <- Minus
2L 19073308..19073682 90..464 100 <- Minus
2L 19073952..19074024 17..89 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:47 Download gff for BS14031.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19071192..19071305 1061..1174 100 <- Minus
arm_2L 19071424..19071725 759..1060 100 <- Minus
arm_2L 19072831..19073015 574..758 100 <- Minus
arm_2L 19073106..19073214 465..573 100 <- Minus
arm_2L 19073308..19073682 90..464 100 <- Minus
arm_2L 19073952..19074024 17..89 100   Minus

BS14031.pep Sequence

Translation from 16 to 1173

> BS14031.pep
MYALTILLPILQLFAIVRAESGEFEKLLVPVSHGSAEQRSGARSNETTGH
SVAARSYYDVVQNAGQTGCSVGTECTPLHDCTALIYEVARSCYYGDKSLY
CGGSSEELPYVCCPSSPLEKNQVCGKSLVQGHFYKGLGSYPFVARIGFKH
VNTGAFAYPCAGAVIARRVILTAAHCALAKADGHRLSSVRVGEYDTSSDP
DCANTGFCAPRSVNHAISHVIVHPDYKQGQYHHDIALLVLKTPLNYSVAT
QPICLQKTRANLVVGKRATIAGWGKMSTSSVRQPEMSHLDVPLTSWDLCL
RNYGSTGALESPNSIEGQWMCAGGEGKDVCQGFGGAPLFIQENGIFSQIG
IMSFGSDNCGGLRIPSVYTSVAHFSEWIHDNTPPE*

BS14031.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:57:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG17572-PA 385 CG17572-PA 1..385 1..385 2065 100 Plus
Ser7-PA 397 CG2045-PA 118..388 118..378 323 31.4 Plus
CG31219-PB 345 CG31219-PB 65..339 111..378 318 32.4 Plus
CG31728-PC 639 CG31728-PC 377..637 102..381 307 28.9 Plus
MP1-PA 390 CG1102-PA 158..387 160..381 300 32.9 Plus