Clone Sequence Records
BS14031.3prime Sequence
451 bp (381 high quality bases) assembled on 2006-10-13
> BS14031.3prime
ATGGTCTAGAAAGCTTCTACTCCGGCGGCGTGTTGTCGTGAATCCACTCG
GAAAAGTGGGCCACGGATGTGTAGACACTCGGGATGCGCAGACCGCCGCA
GTTATCAGATCCAAAGGACATGATGCCGATCTGTGAAAAGATGCCGTTCT
CTTGTATGAAAAGCGGTGCTCCGCCGAATCCTTGGCAGACGTCCTTGCCC
TCGCCGCCGGCGCACATCCATTGACCCTCGATGGAGTTGGGCGATTCCAG
GGCACCCGTGGAGCCGTAGTTGCGCAGGCACAGGTCCCAGCTGGTCAGCG
GCACGTCCAGATGCGACATCTCCGGCTGGCGGACACTCGACGTGGACATC
TTGCCCCAACCGGCGATGGTAGCCCGTTTGCCCCCCACCAGGTTGGCGCG
TGTCTTCTGCAGGCAGATGGGCTGTGTAGCCACCGAATAGTTTAGCGGGC
G
BS14031.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:19:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17572-PA | 1158 | CG17572-RA | 727..1158 | 448..17 | 2135 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:37:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17572-RA | 1344 | CG17572-RA | 852..1284 | 448..16 | 2150 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:37:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19071424..19071726 | 131..433 | 1500 | 99.7 | Plus |
2L | 23513712 | 2L | 19071191..19071310 | 16..135 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:37:12 has no hits.
BS14031.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:00 Download gff for
BS14031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17572-PA | 725..1158 | 17..451 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:16:48 Download gff for
BS14031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17572-RA | 850..1286 | 12..451 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:25:32 Download gff for
BS14031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17572-RA | 850..1286 | 12..451 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:25:32 Download gff for
BS14031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19071189..19071305 | 12..130 | 98 | <- | Plus |
2L | 19071424..19071725 | 131..432 | 99 | <- | Plus |
2L | 19072831..19072848 | 433..451 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:16:48 Download gff for
BS14031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19071189..19071305 | 12..130 | 98 | <- | Plus |
arm_2L | 19071424..19071725 | 131..432 | 99 | <- | Plus |
arm_2L | 19072831..19072848 | 433..451 | 94 | | Plus |
BS14031.5prime Sequence
475 bp (458 high quality bases) assembled on 2006-10-13
> BS14031.5prime
GAAGTTATCAGTCGACATGTACGCGTTAACAATACTTTTACCAATTTTGC
AACTATTTGCAATCGTTCGAGCGGAATCGGGAGAATTCGAGAAACTCCTG
GTGCCCGTGAGCCACGGAAGCGCAGAGCAAAGGAGCGGAGCACGGAGCAA
CGAGACTACTGGACACTCGGTGGCCGCCCGCTCCTACTACGACGTGGTGC
AAAACGCCGGACAGACGGGCTGCTCCGTGGGCACCGAGTGCACCCCGCTC
CACGACTGCACCGCCCTGATCTACGAGGTTGCCCGGAGTTGCTACTACGG
CGACAAGTCGCTCTACTGCGGCGGATCCAGCGAGGAGCTGCCCTACGTCT
GCTGCCCCAGCAGTCCGTTGGAGAAGAACCAGGTGTGCGGCAAGTCACTG
GTCCAGGGGCACTTCTACAAGGGACTGGGCTCCTATCCCTTTGTCGCGCG
CATCGGCTTCAAACATGTCAACACT
BS14031.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:19:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17572-PA | 1158 | CG17572-RA | 1..459 | 17..475 | 2295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:41:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17572-RA | 1344 | CG17572-RA | 126..584 | 17..475 | 2295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:41:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19073308..19073683 | 464..89 | 1880 | 100 | Minus |
2L | 23513712 | 2L | 19073952..19074024 | 89..17 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:41:53 has no hits.
BS14031.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:00 Download gff for
BS14031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17572-PA | 1..459 | 17..475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:21:04 Download gff for
BS14031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17572-RA | 121..584 | 10..475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:12:45 Download gff for
BS14031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17572-RA | 121..584 | 10..475 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:12:45 Download gff for
BS14031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19073299..19073682 | 90..475 | 98 | <- | Minus |
2L | 19073952..19074029 | 10..89 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:21:04 Download gff for
BS14031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19073299..19073682 | 90..475 | 98 | <- | Minus |
arm_2L | 19073952..19074029 | 10..89 | 95 | | Minus |
BS14031.complete Sequence
1190 bp assembled on 2009-08-24
GenBank Submission: KX802232
> BS14031.complete
GAAGTTATCAGTCGACATGTACGCGTTAACAATACTTTTACCAATTTTGC
AACTATTTGCAATCGTTCGAGCGGAATCGGGAGAATTCGAGAAACTCCTG
GTGCCCGTGAGCCACGGAAGCGCAGAGCAAAGGAGCGGAGCACGGAGCAA
CGAGACTACTGGACACTCGGTGGCCGCCCGCTCCTACTACGACGTGGTGC
AAAACGCCGGACAGACGGGCTGCTCCGTGGGCACCGAGTGCACCCCGCTC
CACGACTGCACCGCCCTGATCTACGAGGTTGCCCGGAGTTGCTACTACGG
CGACAAGTCGCTCTACTGCGGCGGATCCAGCGAGGAGCTGCCCTACGTCT
GCTGCCCCAGCAGTCCGTTGGAGAAGAACCAGGTGTGCGGCAAGTCACTG
GTCCAGGGGCACTTCTACAAGGGACTGGGCTCCTATCCCTTTGTCGCGCG
CATCGGCTTCAAACATGTCAACACTGGAGCTTTTGCTTATCCGTGTGCCG
GAGCCGTAATTGCCCGCCGGGTCATCCTCACGGCCGCCCATTGCGCTCTG
GCCAAGGCCGATGGACACCGACTGTCATCGGTGCGCGTGGGCGAGTACGA
TACTAGTAGCGATCCGGACTGCGCCAACACCGGATTCTGTGCACCGCGGT
CGGTCAACCACGCCATCAGCCATGTGATCGTGCATCCCGACTACAAGCAG
GGCCAGTATCACCATGACATTGCTCTGCTGGTGCTTAAAACGCCGCTAAA
CTATTCGGTGGCTACACAGCCCATCTGCCTGCAGAAGACACGCGCCAACC
TGGTGGTGGGCAAACGGGCTACCATCGCCGGTTGGGGCAAGATGTCCACG
TCGAGTGTCCGCCAGCCGGAGATGTCGCATCTGGACGTGCCGCTGACCAG
CTGGGACCTGTGCCTGCGCAACTACGGCTCCACGGGTGCCCTGGAATCGC
CCAACTCCATCGAGGGTCAATGGATGTGCGCCGGCGGCGAGGGCAAGGAC
GTCTGCCAAGGATTCGGCGGAGCACCGCTTTTCATACAAGAGAACGGCAT
CTTTTCACAGATCGGCATCATGTCCTTTGGATCTGATAACTGCGGCGGTC
TGCGCATCCCGAGTGTCTACACATCCGTGGCCCACTTTTCCGAGTGGATT
CACGACAACACGCCGCCGGAGTAGAAGCTTTCTAGACCAT
BS14031.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:28:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17572-RA | 1158 | CG17572-PA | 1..1158 | 17..1174 | 5790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17572-RA | 1344 | CG17572-RA | 126..1284 | 17..1175 | 5795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19073308..19073683 | 464..89 | 1880 | 100 | Minus |
2L | 23513712 | 2L | 19071424..19071726 | 1060..758 | 1515 | 100 | Minus |
2L | 23513712 | 2L | 19072831..19073015 | 758..574 | 925 | 100 | Minus |
2L | 23513712 | 2L | 19071191..19071310 | 1175..1056 | 600 | 100 | Minus |
2L | 23513712 | 2L | 19073104..19073214 | 575..465 | 555 | 100 | Minus |
2L | 23513712 | 2L | 19073952..19074024 | 89..17 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:28:47 has no hits.
BS14031.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:51 Download gff for
BS14031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17572-RA | 123..1280 | 17..1174 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:47 Download gff for
BS14031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17572-RA | 126..1283 | 17..1174 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:31 Download gff for
BS14031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17572-RA | 126..1283 | 17..1174 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:31 Download gff for
BS14031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19071192..19071305 | 1061..1174 | 100 | <- | Minus |
2L | 19071424..19071725 | 759..1060 | 100 | <- | Minus |
2L | 19072831..19073015 | 574..758 | 100 | <- | Minus |
2L | 19073106..19073214 | 465..573 | 100 | <- | Minus |
2L | 19073308..19073682 | 90..464 | 100 | <- | Minus |
2L | 19073952..19074024 | 17..89 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:47 Download gff for
BS14031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19071192..19071305 | 1061..1174 | 100 | <- | Minus |
arm_2L | 19071424..19071725 | 759..1060 | 100 | <- | Minus |
arm_2L | 19072831..19073015 | 574..758 | 100 | <- | Minus |
arm_2L | 19073106..19073214 | 465..573 | 100 | <- | Minus |
arm_2L | 19073308..19073682 | 90..464 | 100 | <- | Minus |
arm_2L | 19073952..19074024 | 17..89 | 100 | | Minus |
BS14031.pep Sequence
Translation from 16 to 1173
> BS14031.pep
MYALTILLPILQLFAIVRAESGEFEKLLVPVSHGSAEQRSGARSNETTGH
SVAARSYYDVVQNAGQTGCSVGTECTPLHDCTALIYEVARSCYYGDKSLY
CGGSSEELPYVCCPSSPLEKNQVCGKSLVQGHFYKGLGSYPFVARIGFKH
VNTGAFAYPCAGAVIARRVILTAAHCALAKADGHRLSSVRVGEYDTSSDP
DCANTGFCAPRSVNHAISHVIVHPDYKQGQYHHDIALLVLKTPLNYSVAT
QPICLQKTRANLVVGKRATIAGWGKMSTSSVRQPEMSHLDVPLTSWDLCL
RNYGSTGALESPNSIEGQWMCAGGEGKDVCQGFGGAPLFIQENGIFSQIG
IMSFGSDNCGGLRIPSVYTSVAHFSEWIHDNTPPE*
BS14031.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:57:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17572-PA | 385 | CG17572-PA | 1..385 | 1..385 | 2065 | 100 | Plus |
Ser7-PA | 397 | CG2045-PA | 118..388 | 118..378 | 323 | 31.4 | Plus |
CG31219-PB | 345 | CG31219-PB | 65..339 | 111..378 | 318 | 32.4 | Plus |
CG31728-PC | 639 | CG31728-PC | 377..637 | 102..381 | 307 | 28.9 | Plus |
MP1-PA | 390 | CG1102-PA | 158..387 | 160..381 | 300 | 32.9 | Plus |