Clone BS14034 Report

Search the DGRC for BS14034

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:140
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptObp99a-RA
Protein status:BS14034.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14034.3prime Sequence

464 bp (455 high quality bases) assembled on 2006-10-13

> BS14034.3prime
ATGGTCTAGAAAGCTTCTAGGCCTTCGGGGCCAGGCTCTTCTGGATCTGG
GCCAGGTTCTCCTTCAGCAGACAGGTGGCTCCGCGGTAGGCCCACTCGCA
GGCATTGGATCCCTGCTCGTTCTTGTCCACGCAGGCGGCCAAGGAGGCGT
GGAAGGCCTCGTTGTGGTCAGCGTGGTTGCCCACCAGCTGTTGGTGGATG
TTCTCCACGTTGAAACCGCTCTGGACGTCGAACAGGCCCCACTTGGTGAA
GACGCACTTGATGTAGCACTGGGTCTTGGCGTCGTTGGGGTACTCCCACT
TCTGGTACTTCTCCACCAGATCCACGGGCACGGCCAGCTCCTTGACGCAC
TCATCGCGGTAGGCCAGCATGTCGTGTCGGTTCTTCACCACATAGTCGGC
GGAGGCCAGTCCAATCAGCACGCAGATGGCAACGAAAACCTTCATGTCGA
CTGATAACTTCGTA

BS14034.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG18111-PA 429 Obp99a-RA 1..429 445..17 2145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:13:57
Subject Length Description Subject Range Query Range Score Percent Strand
Obp99a-RB 561 CG18111-RB 60..488 445..17 2145 100 Minus
Obp99a-RA 610 CG18111-RA 60..488 445..17 2145 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29671822..29672212 407..17 1955 100 Minus
3R 32079331 3R 29671716..29671755 445..406 200 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:13:54 has no hits.

BS14034.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:01 Download gff for BS14034.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18111-PA 1..429 17..445 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:26:56 Download gff for BS14034.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp99a-RA 53..496 6..452 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:15 Download gff for BS14034.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp99a-RA 53..496 6..452 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:15 Download gff for BS14034.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29671709..29671754 407..452 93 -> Minus
3R 29671823..29672220 6..406 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:26:56 Download gff for BS14034.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25497431..25497476 407..452 93 -> Minus
arm_3R 25497545..25497942 6..406 98   Minus

BS14034.5prime Sequence

459 bp (459 high quality bases) assembled on 2006-10-13

> BS14034.5prime
GAAGTTATCAGTCGACATGAAGGTTTTCGTTGCCATCTGCGTGCTGATTG
GACTGGCCTCCGCCGACTATGTGGTGAAGAACCGACACGACATGCTGGCC
TACCGCGATGAGTGCGTCAAGGAGCTGGCCGTGCCCGTGGATCTGGTGGA
GAAGTACCAGAAGTGGGAGTACCCCAACGACGCCAAGACCCAGTGCTACA
TCAAGTGCGTCTTCACCAAGTGGGGCCTGTTCGACGTCCAGAGCGGTTTC
AACGTGGAGAACATCCACCAACAGCTGGTGGGCAACCACGCTGACCACAA
CGAGGCCTTCCACGCCTCCTTGGCCGCCTGCGTGGACAAGAACGAGCAGG
GATCCAATGCCTGCGAGTGGGCCTACCGCGGAGCCACCTGTCTGCTGAAG
GAGAACCTGGCCCAGATCCAGAAGAGCCTGGCCCCGAAGGCCTAGAAGCT
TTCTAGACC

BS14034.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG18111-PA 429 Obp99a-RA 1..429 17..445 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:33:16
Subject Length Description Subject Range Query Range Score Percent Strand
Obp99a-RB 561 CG18111-RB 60..488 17..445 2145 100 Plus
Obp99a-RA 610 CG18111-RA 60..488 17..445 2145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:33:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29671822..29672212 55..445 1955 100 Plus
3R 32079331 3R 29671716..29671755 17..56 200 100 Plus
Blast to na_te.dros performed on 2015-02-06 10:33:12 has no hits.

BS14034.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:02 Download gff for BS14034.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18111-PA 1..429 17..445 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:42:51 Download gff for BS14034.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp99a-RA 53..496 10..456 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:16 Download gff for BS14034.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp99a-RA 53..496 10..456 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:16 Download gff for BS14034.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29671709..29671754 10..55 93 -> Plus
3R 29671823..29672220 56..456 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:51 Download gff for BS14034.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25497431..25497476 10..55 93 -> Plus
arm_3R 25497545..25497942 56..456 98   Plus

BS14034.complete Sequence

461 bp assembled on 2006-11-01

GenBank Submission: FJ637587

> BS14034.complete
GAAGTTATCAGTCGACATGAAGGTTTTCGTTGCCATCTGCGTGCTGATTG
GACTGGCCTCCGCCGACTATGTGGTGAAGAACCGACACGACATGCTGGCC
TACCGCGATGAGTGCGTCAAGGAGCTGGCCGTGCCCGTGGATCTGGTGGA
GAAGTACCAGAAGTGGGAGTACCCCAACGACGCCAAGACCCAGTGCTACA
TCAAGTGCGTCTTCACCAAGTGGGGCCTGTTCGACGTCCAGAGCGGTTTC
AACGTGGAGAACATCCACCAACAGCTGGTGGGCAACCACGCTGACCACAA
CGAGGCCTTCCACGCCTCCTTGGCCGCCTGCGTGGACAAGAACGAGCAGG
GATCCAATGCCTGCGAGTGGGCCTACCGCGGAGCCACCTGTCTGCTGAAG
GAGAACCTGGCCCAGATCCAGAAGAGCCTGGCCCCGAAGGCCTAGAAGCT
TTCTAGACCAT

BS14034.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
Obp99a-RB 429 CG18111-PB 1..429 17..445 2145 100 Plus
Obp99a-RA 429 CG18111-PA 1..429 17..445 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
Obp99a-RB 561 CG18111-RB 60..488 17..445 2145 100 Plus
Obp99a-RA 610 CG18111-RA 60..488 17..445 2145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29671822..29672212 55..445 1955 100 Plus
3R 32079331 3R 29671716..29671755 17..56 200 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:36:17 has no hits.

BS14034.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:58 Download gff for BS14034.complete
Subject Subject Range Query Range Percent Splice Strand
Obp99a-RA 1..429 17..445 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:51:37 Download gff for BS14034.complete
Subject Subject Range Query Range Percent Splice Strand
Obp99a-RA 50..493 10..456 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:02:43 Download gff for BS14034.complete
Subject Subject Range Query Range Percent Splice Strand
Obp99a-RA 60..488 17..445 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:58 Download gff for BS14034.complete
Subject Subject Range Query Range Percent Splice Strand
Obp99a-RA 50..493 10..456 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:45:13 Download gff for BS14034.complete
Subject Subject Range Query Range Percent Splice Strand
Obp99a-RA 60..488 17..445 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:45:13 Download gff for BS14034.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29671823..29672212 56..445 100   Plus
3R 29671716..29671754 17..55 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:02:43 Download gff for BS14034.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25497438..25497476 17..55 100 -> Plus
arm_3R 25497545..25497934 56..445 100   Plus

BS14034.pep Sequence

Translation from 16 to 444

> BS14034.pep
MKVFVAICVLIGLASADYVVKNRHDMLAYRDECVKELAVPVDLVEKYQKW
EYPNDAKTQCYIKCVFTKWGLFDVQSGFNVENIHQQLVGNHADHNEAFHA
SLAACVDKNEQGSNACEWAYRGATCLLKENLAQIQKSLAPKA*

BS14034.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
Obp99a-PB 142 CG18111-PB 1..142 1..142 764 100 Plus
Obp99a-PA 142 CG18111-PA 1..142 1..142 764 100 Plus
Obp99b-PB 149 CG7592-PB 3..147 5..138 290 37.9 Plus
Obp99b-PA 149 CG7592-PA 3..147 5..138 290 37.9 Plus
Obp44a-PB 143 CG2297-PB 5..140 3..138 278 42.3 Plus