Clone Sequence Records
BS14035.complete Sequence
386 bp assembled on 2010-02-09
GenBank Submission: KX806443
> BS14035.complete
GAAGTTATCAGTCGACATGATAGCAATGGACGAGCAGCGCGGCGACAAGA
TCTACGGCGGATGCGAGGGTCCGGACGCCATGTACGTGAAGCTGATTTCC
TCGGACGGCCACGAATTTGTCGTCAAACGCGAGCACGCTCTCACCTCCGG
CACAATCCGGGCGATGTTGTCCGGACCGGGTCAGTTTGCCGAGAACGAGG
CCAACGAGGTGCATTTCCGGGAGATACCATCCCACGTCCTACAAAAGGTC
TGCATGTACTTCACCTATAAAGTGCGTTACACCAACAGTTCTACCGAAAT
ACCCGAATTCCCGATCGCTCCGGAGATCGCATTAGAACTTTTGATGGCGG
CTAATTTCCTAGACTGCTAAAAGCTTTCTAGACCAT
BS14035.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:23:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
EloC-RB | 354 | CG9291-PB | 1..354 | 17..370 | 1770 | 100 | Plus |
EloC-RA | 354 | CG9291-PA | 1..354 | 17..370 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:23:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
EloC-RB | 654 | CG9291-RB | 148..502 | 17..371 | 1775 | 100 | Plus |
EloC-RA | 576 | CG9291-RA | 70..424 | 17..371 | 1775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:23:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19445928..19446139 | 228..17 | 1060 | 100 | Minus |
2R | 25286936 | 2R | 19445237..19445379 | 371..229 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:23:17 has no hits.
BS14035.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:01 Download gff for
BS14035.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elongin-C-RB | 1..354 | 17..370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:42 Download gff for
BS14035.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elongin-C-RA | 60..411 | 17..368 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:13 Download gff for
BS14035.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elongin-C-RA | 70..421 | 17..368 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:37:05 Download gff for
BS14035.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elongin-C-RA | 60..411 | 17..368 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:27:23 Download gff for
BS14035.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
EloC-RA | 70..421 | 17..368 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:27:23 Download gff for
BS14035.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19445240..19445379 | 229..368 | 100 | <- | Minus |
2R | 19445928..19446139 | 17..228 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:13 Download gff for
BS14035.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15332745..15332884 | 229..368 | 100 | <- | Minus |
arm_2R | 15333433..15333644 | 17..228 | 100 | | Minus |
BS14035.5prime Sequence
384 bp (384 high quality bases) assembled on 2006-10-13
> BS14035.5prime
GAAGTTATCAGTCGACATGATAGCAATGGACGAGCAGCGCGGCGACAAGA
TCTACGGCGGATGCGAGGGTCCGGACGCCATGTACGTGAAGCTGATTTCC
TCGGACGGCCACGAATTTGTCGTCAAACGCGAGCACGCTCTCACCTCCGG
CACAATCCGGGCGATGTTGTCCGGACCGGGTCAGTTTGCCGAGAACGAGG
CCAACGAGGTGCATTTCCGGGAGATACCATCCCACGTCCTACAAAAGGTC
TGCATGTACTTCACCTATAAAGTGCGTTACACCAACAGTTCTACCGAAAT
ACCCGAATTCCCGATCGCTCCGGAGATCGCATTAGAACTTTTGATGGCGG
CTAATTTCCTAGACTGCTAAAAGCTTTCTAGACC
BS14035.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:20:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9291-PA | 354 | Elongin-C-RA | 1..354 | 17..370 | 1770 | 100 | Plus |
CG9291-PB | 354 | Elongin-C-RB | 1..354 | 17..370 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:24:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
EloC-RB | 654 | CG9291-RB | 148..502 | 17..371 | 1775 | 100 | Plus |
EloC-RA | 576 | CG9291-RA | 70..424 | 17..371 | 1775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:24:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19445928..19446139 | 228..17 | 1060 | 100 | Minus |
2R | 25286936 | 2R | 19445237..19445379 | 371..229 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:24:43 has no hits.
BS14035.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:02 Download gff for
BS14035.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9291-PB | 1..354 | 17..370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:50:51 Download gff for
BS14035.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elongin-C-RA | 70..424 | 17..371 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:54:15 Download gff for
BS14035.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
EloC-RA | 70..424 | 17..371 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:54:15 Download gff for
BS14035.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19445237..19445379 | 229..371 | 100 | <- | Minus |
2R | 19445928..19446143 | 12..228 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:50:51 Download gff for
BS14035.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15332742..15332884 | 229..371 | 100 | <- | Minus |
arm_2R | 15333433..15333648 | 12..228 | 99 | | Minus |
BS14035.pep Sequence
Translation from 16 to 369
> BS14035.pep
MIAMDEQRGDKIYGGCEGPDAMYVKLISSDGHEFVVKREHALTSGTIRAM
LSGPGQFAENEANEVHFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPI
APEIALELLMAANFLDC*
BS14035.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:05:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
EloC-PB | 117 | CG9291-PB | 1..117 | 1..117 | 614 | 100 | Plus |
EloC-PA | 117 | CG9291-PA | 1..117 | 1..117 | 614 | 100 | Plus |