Clone BS14036 Report

Search the DGRC for BS14036

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:140
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptProsbeta4-RA
Protein status:BS14036.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14036.3prime Sequence

615 bp (563 high quality bases) assembled on 2006-10-13

> BS14036.3prime
ATGGTCTAGAAAGCTTCTAAGCGGCCAGGCTAGCAGCGCTGATTGGCTCC
AAATCTCGCACACCATCCTTGTCCACGACGGCGACGGTGAAGTTCTTGAG
GTTGACGACCAGGCGCTTCTGGATTTCGGCAATGCACTTCTTGAAGACGT
CGTAGGCCTCCGCCTGGGTTATATTGGGGTGCCAGTATCGGTCATAGATG
CTGGATGCGAAGATCGCACCATAGCCATGACCGGCGTAATTCACAGGCAG
TGCATTGGCCAAATAGTCAATGAAGGTGAGCTCCGGACCCGCGTTGGGAT
CGTAGCCGGCCACAAACATGAACACTTGGTAGGGCGTGCGACTGCGAAGA
TATTCGGCCAGATTCTTGCGAGTAAAATGAGCCGATTCACGTGGACTTAA
ATCGTAGCCATTGCGCATCTTGTACAACGCTATGTTCTTCGAAATGAATT
CGGTAAATTGCTCCGTGTCGCCCGATTCGCCGACGGTTGAAATAAGCAGA
CTATCCGACACCTTGTGGATTTTGTTCTGATCCTCTTTCATCACTATAAT
GGATCGGGCGTGGGTGGTGTCCGCCGCCAGCATCACGAAGTCAGGGCCCT
TGATACCCAGTAGAG

BS14036.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG17331-PA 606 CG17331-RA 8..606 615..17 2995 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta4-RB 815 CG17331-RB 108..706 615..17 2995 100 Minus
Prosbeta4-RA 774 CG17331-RA 108..706 615..17 2995 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16731289..16731578 17..306 1450 100 Plus
2L 23513712 2L 16731643..16731869 306..532 1135 100 Plus
2L 23513712 2L 16731943..16732026 532..615 420 100 Plus
Blast to na_te.dros performed 2015-02-03 06:47:57
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy12 10218 gypsy12 GYPSY12 10218bp 3255..3304 236..285 106 68 Plus

BS14036.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:02 Download gff for BS14036.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17331-PA 8..606 17..615 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:46 Download gff for BS14036.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4-RA 108..717 5..615 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:35 Download gff for BS14036.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4-RA 108..717 5..615 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:35 Download gff for BS14036.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16731278..16731577 5..305 98 <- Plus
2L 16731643..16731868 306..531 100 <- Plus
2L 16731943..16732026 532..615 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:46 Download gff for BS14036.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16731278..16731577 5..305 98 <- Plus
arm_2L 16731643..16731868 306..531 100 <- Plus
arm_2L 16731943..16732026 532..615 100   Plus

BS14036.5prime Sequence

631 bp (533 high quality bases) assembled on 2006-10-13

> BS14036.5prime
GAAGTTATCAGTCGACATGGAGACTCTACTGGGTATCAAGGGCCCTGACT
TCGTGATGCTGGCGGCGGACACCACCCACGCCCGATCCATTATAGTGATG
AAAGAGGATCAGAACAAAATCCACAAGGTGTCGGATAGTCTGCTTATTTC
AACCGTCGGCGAATCGGGCGACACGGAGCAATTTACCGAATTCATTTCGA
AGAACATAGCGTTGTACAAGATGCGCAATGGCTACGATTTAAGTCCACGT
GAATCGGCTCATTTTACTCGCAAGAATCTGGCCGAATATCTTCGCAGTCG
CACGCCCTACCAAGTGTTCATGTTTGTGGCCGGCTACGATCCCAACGCGG
GTCCGGAGCTCACCTTCATTGACTATTTGGCCAATGCACTGCCTGTGAAT
TACGCCGGTCATGGCTATGGTGCGATCTTCGCATCCAGCATCTATGACCG
ATACTGGCACCCCAATATAACCCAGGCGGAGGCCTACGACGTCTTCAAGA
AGTGCATTGCCGAAATCCAGAAGCGCCTGGTCGTCAACCTCAAAAACTTC
ACCGTCGCCGTCGTGGACAAGGATGGTGTGCGAGATTTGGAGCCAATCAG
CGCTGCTAGCCTGACCGCTTAGAAGCTTTCT

BS14036.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG17331-PA 606 CG17331-RA 1..606 17..622 2980 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta4-RB 815 CG17331-RB 99..706 15..622 3010 99.7 Plus
Prosbeta4-RA 774 CG17331-RA 99..706 15..622 3010 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16731289..16731578 622..333 1420 99.3 Minus
2L 23513712 2L 16731643..16731869 333..107 1135 100 Minus
2L 23513712 2L 16731943..16732035 107..15 465 100 Minus
Blast to na_te.dros performed 2015-02-10 16:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy12 10218 gypsy12 GYPSY12 10218bp 3255..3304 403..354 106 68 Minus

BS14036.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:03 Download gff for BS14036.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17331-PA 1..606 17..622 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:14:59 Download gff for BS14036.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4-RA 89..715 6..631 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:49:06 Download gff for BS14036.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4-RA 89..715 6..631 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:49:06 Download gff for BS14036.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16731280..16731577 334..631 97 <- Minus
2L 16731643..16731868 108..333 100 <- Minus
2L 16731943..16732045 6..107 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:14:59 Download gff for BS14036.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16731280..16731577 334..631 97 <- Minus
arm_2L 16731643..16731868 108..333 100 <- Minus
arm_2L 16731943..16732045 6..107 96   Minus

BS14036.complete Sequence

638 bp assembled on 2006-11-01

GenBank Submission: FJ637588

> BS14036.complete
GAAGTTATCAGTCGACATGGAGACTCTACTGGGTATCAAGGGCCCTGACT
TCGTGATGCTGGCGGCGGACACCACCCACGCCCGATCCATTATAGTGATG
AAAGAGGATCAGAACAAAATCCACAAGGTGTCGGATAGTCTGCTTATTTC
AACCGTCGGCGAATCGGGCGACACGGAGCAATTTACCGAATTCATTTCGA
AGAACATAGCGTTGTACAAGATGCGCAATGGCTACGATTTAAGTCCACGT
GAATCGGCTCATTTTACTCGCAAGAATCTGGCCGAATATCTTCGCAGTCG
CACGCCCTACCAAGTGTTCATGTTTGTGGCCGGCTACGATCCCAACGCGG
GTCCGGAGCTCACCTTCATTGACTATTTGGCCAATGCACTGCCTGTGAAT
TACGCCGGTCATGGCTATGGTGCGATCTTCGCATCCAGCATCTATGACCG
ATACTGGCACCCCAATATAACCCAGGCGGAGGCCTACGACGTCTTCAAGA
AGTGCATTGCCGAAATCCAGAAGCGCCTGGTCGTCAACCTCAAGAACTTC
ACCGTCGCCGTCGTGGACAAGGATGGTGTGCGAGATTTGGAGCCAATCAG
CGCTGCTAGCCTGGCCGCTTAGAAGCTTTCTAGACCAT

BS14036.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:32:27
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta4-RB 606 CG17331-PB 1..606 17..622 3030 100 Plus
Prosbeta4-RA 606 CG17331-PA 1..606 17..622 3030 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:32:27
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta4-RB 815 CG17331-RB 99..706 15..622 3040 100 Plus
Prosbeta4-RA 774 CG17331-RA 99..706 15..622 3040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16731289..16731578 622..333 1450 100 Minus
2L 23513712 2L 16731643..16731869 333..107 1135 100 Minus
2L 23513712 2L 16731943..16732035 107..15 465 100 Minus
Blast to na_te.dros performed 2014-11-27 15:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy12 10218 gypsy12 GYPSY12 10218bp 3255..3304 403..354 106 68 Minus

BS14036.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:02 Download gff for BS14036.complete
Subject Subject Range Query Range Percent Splice Strand
CG17331-RA 1..606 17..622 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:25 Download gff for BS14036.complete
Subject Subject Range Query Range Percent Splice Strand
CG17331-RA 85..713 6..634 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:36 Download gff for BS14036.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4-RA 101..706 17..622 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:03 Download gff for BS14036.complete
Subject Subject Range Query Range Percent Splice Strand
CG17331-RA 85..713 6..634 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:20 Download gff for BS14036.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4-RA 101..706 17..622 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:20 Download gff for BS14036.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16731943..16732033 17..107 100   Minus
2L 16731289..16731577 334..622 100 <- Minus
2L 16731643..16731868 108..333 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:36 Download gff for BS14036.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16731289..16731577 334..622 100 <- Minus
arm_2L 16731643..16731868 108..333 100 <- Minus
arm_2L 16731943..16732033 17..107 100   Minus

BS14036.pep Sequence

Translation from 16 to 621

> BS14036.pep
METLLGIKGPDFVMLAADTTHARSIIVMKEDQNKIHKVSDSLLISTVGES
GDTEQFTEFISKNIALYKMRNGYDLSPRESAHFTRKNLAEYLRSRTPYQV
FMFVAGYDPNAGPELTFIDYLANALPVNYAGHGYGAIFASSIYDRYWHPN
ITQAEAYDVFKKCIAEIQKRLVVNLKNFTVAVVDKDGVRDLEPISAASLA
A*

BS14036.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:17:54
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta4-PB 201 CG17331-PB 1..201 1..201 1034 100 Plus
Prosbeta4-PA 201 CG17331-PA 1..201 1..201 1034 100 Plus
Prosbeta4R2-PB 210 CG17302-PB 3..201 1..199 609 55.3 Plus
Prosbeta4R2-PA 210 CG17302-PA 3..201 1..199 609 55.3 Plus
Prosbeta4R1-PA 215 CG17301-PA 1..199 1..199 489 43.2 Plus