Clone Sequence Records
BS14036.3prime Sequence
615 bp (563 high quality bases) assembled on 2006-10-13
> BS14036.3prime
ATGGTCTAGAAAGCTTCTAAGCGGCCAGGCTAGCAGCGCTGATTGGCTCC
AAATCTCGCACACCATCCTTGTCCACGACGGCGACGGTGAAGTTCTTGAG
GTTGACGACCAGGCGCTTCTGGATTTCGGCAATGCACTTCTTGAAGACGT
CGTAGGCCTCCGCCTGGGTTATATTGGGGTGCCAGTATCGGTCATAGATG
CTGGATGCGAAGATCGCACCATAGCCATGACCGGCGTAATTCACAGGCAG
TGCATTGGCCAAATAGTCAATGAAGGTGAGCTCCGGACCCGCGTTGGGAT
CGTAGCCGGCCACAAACATGAACACTTGGTAGGGCGTGCGACTGCGAAGA
TATTCGGCCAGATTCTTGCGAGTAAAATGAGCCGATTCACGTGGACTTAA
ATCGTAGCCATTGCGCATCTTGTACAACGCTATGTTCTTCGAAATGAATT
CGGTAAATTGCTCCGTGTCGCCCGATTCGCCGACGGTTGAAATAAGCAGA
CTATCCGACACCTTGTGGATTTTGTTCTGATCCTCTTTCATCACTATAAT
GGATCGGGCGTGGGTGGTGTCCGCCGCCAGCATCACGAAGTCAGGGCCCT
TGATACCCAGTAGAG
BS14036.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17331-PA | 606 | CG17331-RA | 8..606 | 615..17 | 2995 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:48:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta4-RB | 815 | CG17331-RB | 108..706 | 615..17 | 2995 | 100 | Minus |
Prosbeta4-RA | 774 | CG17331-RA | 108..706 | 615..17 | 2995 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:47:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16731289..16731578 | 17..306 | 1450 | 100 | Plus |
2L | 23513712 | 2L | 16731643..16731869 | 306..532 | 1135 | 100 | Plus |
2L | 23513712 | 2L | 16731943..16732026 | 532..615 | 420 | 100 | Plus |
Blast to na_te.dros performed 2015-02-03 06:47:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 3255..3304 | 236..285 | 106 | 68 | Plus |
BS14036.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:02 Download gff for
BS14036.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17331-PA | 8..606 | 17..615 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:46 Download gff for
BS14036.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta4-RA | 108..717 | 5..615 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:35 Download gff for
BS14036.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta4-RA | 108..717 | 5..615 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:35 Download gff for
BS14036.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16731278..16731577 | 5..305 | 98 | <- | Plus |
2L | 16731643..16731868 | 306..531 | 100 | <- | Plus |
2L | 16731943..16732026 | 532..615 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:46 Download gff for
BS14036.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16731278..16731577 | 5..305 | 98 | <- | Plus |
arm_2L | 16731643..16731868 | 306..531 | 100 | <- | Plus |
arm_2L | 16731943..16732026 | 532..615 | 100 | | Plus |
BS14036.5prime Sequence
631 bp (533 high quality bases) assembled on 2006-10-13
> BS14036.5prime
GAAGTTATCAGTCGACATGGAGACTCTACTGGGTATCAAGGGCCCTGACT
TCGTGATGCTGGCGGCGGACACCACCCACGCCCGATCCATTATAGTGATG
AAAGAGGATCAGAACAAAATCCACAAGGTGTCGGATAGTCTGCTTATTTC
AACCGTCGGCGAATCGGGCGACACGGAGCAATTTACCGAATTCATTTCGA
AGAACATAGCGTTGTACAAGATGCGCAATGGCTACGATTTAAGTCCACGT
GAATCGGCTCATTTTACTCGCAAGAATCTGGCCGAATATCTTCGCAGTCG
CACGCCCTACCAAGTGTTCATGTTTGTGGCCGGCTACGATCCCAACGCGG
GTCCGGAGCTCACCTTCATTGACTATTTGGCCAATGCACTGCCTGTGAAT
TACGCCGGTCATGGCTATGGTGCGATCTTCGCATCCAGCATCTATGACCG
ATACTGGCACCCCAATATAACCCAGGCGGAGGCCTACGACGTCTTCAAGA
AGTGCATTGCCGAAATCCAGAAGCGCCTGGTCGTCAACCTCAAAAACTTC
ACCGTCGCCGTCGTGGACAAGGATGGTGTGCGAGATTTGGAGCCAATCAG
CGCTGCTAGCCTGACCGCTTAGAAGCTTTCT
BS14036.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17331-PA | 606 | CG17331-RA | 1..606 | 17..622 | 2980 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:39:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta4-RB | 815 | CG17331-RB | 99..706 | 15..622 | 3010 | 99.7 | Plus |
Prosbeta4-RA | 774 | CG17331-RA | 99..706 | 15..622 | 3010 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:39:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16731289..16731578 | 622..333 | 1420 | 99.3 | Minus |
2L | 23513712 | 2L | 16731643..16731869 | 333..107 | 1135 | 100 | Minus |
2L | 23513712 | 2L | 16731943..16732035 | 107..15 | 465 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 16:39:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 3255..3304 | 403..354 | 106 | 68 | Minus |
BS14036.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:03 Download gff for
BS14036.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17331-PA | 1..606 | 17..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:14:59 Download gff for
BS14036.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta4-RA | 89..715 | 6..631 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:49:06 Download gff for
BS14036.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta4-RA | 89..715 | 6..631 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:49:06 Download gff for
BS14036.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16731280..16731577 | 334..631 | 97 | <- | Minus |
2L | 16731643..16731868 | 108..333 | 100 | <- | Minus |
2L | 16731943..16732045 | 6..107 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:14:59 Download gff for
BS14036.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16731280..16731577 | 334..631 | 97 | <- | Minus |
arm_2L | 16731643..16731868 | 108..333 | 100 | <- | Minus |
arm_2L | 16731943..16732045 | 6..107 | 96 | | Minus |
BS14036.complete Sequence
638 bp assembled on 2006-11-01
GenBank Submission: FJ637588
> BS14036.complete
GAAGTTATCAGTCGACATGGAGACTCTACTGGGTATCAAGGGCCCTGACT
TCGTGATGCTGGCGGCGGACACCACCCACGCCCGATCCATTATAGTGATG
AAAGAGGATCAGAACAAAATCCACAAGGTGTCGGATAGTCTGCTTATTTC
AACCGTCGGCGAATCGGGCGACACGGAGCAATTTACCGAATTCATTTCGA
AGAACATAGCGTTGTACAAGATGCGCAATGGCTACGATTTAAGTCCACGT
GAATCGGCTCATTTTACTCGCAAGAATCTGGCCGAATATCTTCGCAGTCG
CACGCCCTACCAAGTGTTCATGTTTGTGGCCGGCTACGATCCCAACGCGG
GTCCGGAGCTCACCTTCATTGACTATTTGGCCAATGCACTGCCTGTGAAT
TACGCCGGTCATGGCTATGGTGCGATCTTCGCATCCAGCATCTATGACCG
ATACTGGCACCCCAATATAACCCAGGCGGAGGCCTACGACGTCTTCAAGA
AGTGCATTGCCGAAATCCAGAAGCGCCTGGTCGTCAACCTCAAGAACTTC
ACCGTCGCCGTCGTGGACAAGGATGGTGTGCGAGATTTGGAGCCAATCAG
CGCTGCTAGCCTGGCCGCTTAGAAGCTTTCTAGACCAT
BS14036.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:32:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta4-RB | 606 | CG17331-PB | 1..606 | 17..622 | 3030 | 100 | Plus |
Prosbeta4-RA | 606 | CG17331-PA | 1..606 | 17..622 | 3030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:32:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta4-RB | 815 | CG17331-RB | 99..706 | 15..622 | 3040 | 100 | Plus |
Prosbeta4-RA | 774 | CG17331-RA | 99..706 | 15..622 | 3040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:32:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16731289..16731578 | 622..333 | 1450 | 100 | Minus |
2L | 23513712 | 2L | 16731643..16731869 | 333..107 | 1135 | 100 | Minus |
2L | 23513712 | 2L | 16731943..16732035 | 107..15 | 465 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 15:32:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 3255..3304 | 403..354 | 106 | 68 | Minus |
BS14036.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:02 Download gff for
BS14036.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17331-RA | 1..606 | 17..622 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:25 Download gff for
BS14036.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17331-RA | 85..713 | 6..634 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:36 Download gff for
BS14036.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta4-RA | 101..706 | 17..622 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:03 Download gff for
BS14036.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17331-RA | 85..713 | 6..634 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:20 Download gff for
BS14036.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta4-RA | 101..706 | 17..622 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:20 Download gff for
BS14036.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16731943..16732033 | 17..107 | 100 | | Minus |
2L | 16731289..16731577 | 334..622 | 100 | <- | Minus |
2L | 16731643..16731868 | 108..333 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:36 Download gff for
BS14036.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16731289..16731577 | 334..622 | 100 | <- | Minus |
arm_2L | 16731643..16731868 | 108..333 | 100 | <- | Minus |
arm_2L | 16731943..16732033 | 17..107 | 100 | | Minus |
BS14036.pep Sequence
Translation from 16 to 621
> BS14036.pep
METLLGIKGPDFVMLAADTTHARSIIVMKEDQNKIHKVSDSLLISTVGES
GDTEQFTEFISKNIALYKMRNGYDLSPRESAHFTRKNLAEYLRSRTPYQV
FMFVAGYDPNAGPELTFIDYLANALPVNYAGHGYGAIFASSIYDRYWHPN
ITQAEAYDVFKKCIAEIQKRLVVNLKNFTVAVVDKDGVRDLEPISAASLA
A*
BS14036.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:17:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta4-PB | 201 | CG17331-PB | 1..201 | 1..201 | 1034 | 100 | Plus |
Prosbeta4-PA | 201 | CG17331-PA | 1..201 | 1..201 | 1034 | 100 | Plus |
Prosbeta4R2-PB | 210 | CG17302-PB | 3..201 | 1..199 | 609 | 55.3 | Plus |
Prosbeta4R2-PA | 210 | CG17302-PA | 3..201 | 1..199 | 609 | 55.3 | Plus |
Prosbeta4R1-PA | 215 | CG17301-PA | 1..199 | 1..199 | 489 | 43.2 | Plus |