Clone BS14039 Report

Search the DGRC for BS14039

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:140
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptCG4598-RA
Protein status:BS14039.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14039.3prime Sequence

703 bp (670 high quality bases) assembled on 2006-10-13

> BS14039.3prime
ATGGTCTAGAAAGCTTTTATTGCTTCTTGGCCTTCTTCTTCAGACCCTCG
AGATAAATGCCCAGACCCTTCTGTACCGCCGGCTGGTTGACAAAGAACAG
GAATTTCTCCAGATCCTCCTTCCGTCCGTTCTGCAGTTGCTGTAGATCAG
CAGCTCGGAATTGCTGCTTGGTCAGTGACCTGGCTAGCGGATTGACCTTG
GCAAAGGTGCCAATGAAGGCGACACACTTTTCAATAGCCTCCTCTTTGTT
ATTGGCAGTCTCATCGATGAGGCCCACCTTCAGGGCCTCCTCCGTGGTGA
ACATGCGACCCTGGTTGAGGGCGCGTTCCGCAATTCGCTGTGGCAAGACG
CTCAGGAAAGAGGCCATAAACCACTGGGGCGCCACAATACCCAGCTGTGT
TTCGTTCAGGCCGATGGTAAAGTTTGGCACCATGACCCGATACTCGCAGG
ATGTGGCTAGCAAGCATCCACCGGCAGGGGAGTGTCCATTGATGGCTGCC
GCTGTGGGAACACTGCTGCCGTAAAGGGCCAGCCAAGTATCCTGCAGTTG
CGTCCAGAAGGCGCGAATCCTGTCCTTATCCGGCTTGTACATCTCCAGAA
TATCCAAACCAGCTGAGAATATTGTGGAGCTAGACGAAGTCAAAATGAGT
CCGCGACTCTTATTGCTCTCGATTTCATCAATGGAGCTCTTCAGGTCCTG
CAG

BS14039.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4598-PA 846 CG4598-RA 160..846 703..17 3435 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:48:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG4598-RB 1216 CG4598-RB 256..942 703..17 3435 100 Minus
CG4598-RA 997 CG4598-RA 256..942 703..17 3435 100 Minus
CG4594-RB 1103 CG4594-RB 287..829 698..156 390 71.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:48:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9919376..9919846 487..17 2355 100 Minus
2L 23513712 2L 9919169..9919317 635..487 745 100 Minus
2L 23513712 2L 9919040..9919108 703..635 345 100 Minus
2L 23513712 2L 9920857..9921185 484..156 265 72 Minus
Blast to na_te.dros performed on 2015-02-03 06:48:06 has no hits.

BS14039.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:05 Download gff for BS14039.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4598-PA 160..846 17..703 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:47 Download gff for BS14039.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4598-RA 256..953 4..703 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:36 Download gff for BS14039.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4598-RA 256..953 4..703 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:36 Download gff for BS14039.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9919040..9919108 635..703 100 -> Minus
2L 9919170..9919316 488..634 100 -> Minus
2L 9919376..9919857 4..487 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:47 Download gff for BS14039.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9919040..9919108 635..703 100 -> Minus
arm_2L 9919170..9919316 488..634 100 -> Minus
arm_2L 9919376..9919857 4..487 98   Minus

BS14039.5prime Sequence

748 bp (685 high quality bases) assembled on 2006-10-13

> BS14039.5prime
GAAGTTATCAGTCGACATGATGCGATCGAAAGTCTTGAGCTTGGTGGCCC
GTGCTGGCTCCAACCGTATGATGTCCACTGCCACCAAGTTGACCACAGTG
GAGGTCAACGACAAGACCGGCATCGCCACCCTCACGATGAACCGGCCACC
CGTAAATGGTCTTAACTTGGAACTGCTGCAGGACCTGAAGAGCTCCATTG
ATGAAATCGAGAGCAATAAGAGTCGCGGACTCATTTTGACTTCGTCTAGC
TCCACAATATTCTCAGCTGGTTTGGATATTCTGGAGATGTACAAGCCGGA
TAAGGACAGGATTCGCGCCTTCTGGACGCAACTGCAGGATACTTGGCTGG
CCCTTTACGGCAGCAGTGTTCCCACAGCGGCAGCCATCAATGGACACTCC
CCTGCCGGTGGATGCTTGCTAGCCACATCCTGCGAGTATCGGGTCATGGT
GCCAAACTTTACCATCGGCCTGAACGAAACACAGCTGGGTATTGTGGCGC
CCCAGTGGTTTATGGCCTCTTTCCTGAGCGTCTTGCCACAGCGAATTGCG
GAACGCGCCCTCAACCAGGGTCGCATGTTCACCACGGAGGAGGCCCTGAA
GGTGGGCCTCATCGATGAGACTGCCAATAACAAAGAGGAGGCTATTGAAA
AGTGTGTCGCCTTCATTTGGCACCTTTGCCAAGGTCAATCCGCTAGCCAG
GTCACTGACCAAGCAGCAATTCCGAGCTGCTGATCTACAGCAACTGCA

BS14039.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4598-PA 846 CG4598-RA 1..651 17..667 3255 100 Plus
CG4598-PA 846 CG4598-RA 650..731 667..748 410 100 Plus
CG4594-PA 843 CG4594-RA 55..131 71..147 185 89.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:17:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4598-RB 1216 CG4598-RB 97..827 17..748 3635 99.9 Plus
CG4598-RA 997 CG4598-RA 97..827 17..748 3635 99.9 Plus
CG4594-RB 1103 CG4594-RB 177..829 71..724 575 73 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:17:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9919376..9919731 392..748 1735 99.7 Plus
2L 23513712 2L 9918881..9919108 17..244 1140 100 Plus
2L 23513712 2L 9919169..9919317 244..392 745 100 Plus
2L 23513712 2L 9920428..9920594 71..237 325 79.6 Plus
2L 23513712 2L 9920857..9921185 395..724 220 71.8 Plus
Blast to na_te.dros performed on 2015-01-31 10:17:22 has no hits.

BS14039.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:05 Download gff for BS14039.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4598-PA 1..730 17..747 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:36:16 Download gff for BS14039.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4598-RA 87..826 7..747 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:27 Download gff for BS14039.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4598-RA 87..826 7..747 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:27 Download gff for BS14039.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9918871..9919108 8..244 98 -> Plus
2L 9919170..9919316 245..391 100 -> Plus
2L 9919376..9919730 392..747 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:36:16 Download gff for BS14039.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9918871..9919108 8..244 98 -> Plus
arm_2L 9919170..9919316 245..391 100 -> Plus
arm_2L 9919376..9919730 392..747 99   Plus

BS14039.complete Sequence

878 bp assembled on 2006-11-01

GenBank Submission: FJ637589

> BS14039.complete
GAAGTTATCAGTCGACATGATGCGATCGAAAGTCTTGAGCTTGGTGGCCC
GTGCTGGCTCCAACCGTATGATGTCCACTGCCACCAAGTTGACCACAGTG
GAGGTCAACGACAAGACCGGCATCGCCACCCTCACGATGAACCGGCCACC
CGTAAATGGTCTTAACTTGGAACTGCTGCAGGACCTGAAGAGCTCCATTG
ATGAAATCGAGAGCAATAAGAGTCGCGGACTCATTTTGACTTCGTCTAGC
TCCACAATATTCTCAGCTGGTTTGGATATTCTGGAGATGTACAAGCCGGA
TAAGGACAGGATTCGCGCCTTCTGGACGCAACTGCAGGATACTTGGCTGG
CCCTTTACGGCAGCAGTGTTCCCACAGCGGCAGCCATCAATGGACACTCC
CCTGCCGGTGGATGCTTGCTAGCCACATCCTGCGAGTATCGGGTCATGGT
GCCAAACTTTACCATCGGCCTGAACGAAACACAGCTGGGTATTGTGGCGC
CCCAGTGGTTTATGGCCTCTTTCCTGAGCGTCTTGCCACAGCGAATTGCG
GAACGCGCCCTCAACCAGGGTCGCATGTTCACCACGGAGGAGGCCCTGAA
GGTGGGCCTCATCGATGAGACTGCCAATAACAAAGAGGAGGCTATTGAAA
AGTGTGTCGCCTTCATTGGCACCTTTGCCAAGGTCAATCCGCTAGCCAGG
TCACTGACCAAGCAGCAATTCCGAGCTGCTGATCTACAGCAACTGCAGAA
CGGACGGAAGGAGGATCTGGAGAAATTCCTGTTCTTTGTCAACCAGCCGG
CGGTACAGAAGGGTCTGGGCATTTATCTCGAGGGTCTGAAGAAGAAGGCC
AAGAAGCAATAAAAGCTTTCTAGACCAT

BS14039.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:40:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4598-RB 846 CG4598-PB 1..846 17..862 4230 100 Plus
CG4598-RA 846 CG4598-PA 1..846 17..862 4230 100 Plus
CG4594-RB 843 CG4594-PB 55..707 71..723 595 72.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG4598-RB 1216 CG4598-RB 97..942 17..862 4230 100 Plus
CG4598-RA 997 CG4598-RA 97..942 17..862 4230 100 Plus
CG4594-RB 1103 CG4594-RB 177..829 71..723 595 72.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:40:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9919376..9919846 392..862 2355 100 Plus
2L 23513712 2L 9918881..9919108 17..244 1140 100 Plus
2L 23513712 2L 9919169..9919317 244..392 745 100 Plus
2L 23513712 2L 9920428..9920594 71..237 325 79.6 Plus
2L 23513712 2L 9920857..9921185 395..723 265 72 Plus
Blast to na_te.dros performed on 2014-11-27 23:40:13 has no hits.

BS14039.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:15 Download gff for BS14039.complete
Subject Subject Range Query Range Percent Splice Strand
CG4598-RA 1..846 17..862 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:34 Download gff for BS14039.complete
Subject Subject Range Query Range Percent Splice Strand
CG4598-RA 70..936 7..875 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:35:02 Download gff for BS14039.complete
Subject Subject Range Query Range Percent Splice Strand
CG4598-RA 97..940 17..860 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:15 Download gff for BS14039.complete
Subject Subject Range Query Range Percent Splice Strand
CG4598-RA 70..936 7..875 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:48 Download gff for BS14039.complete
Subject Subject Range Query Range Percent Splice Strand
CG4598-RA 97..940 17..860 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:48 Download gff for BS14039.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9918881..9919108 17..244 100 -> Plus
2L 9919170..9919316 245..391 100 -> Plus
2L 9919376..9919844 392..860 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:02 Download gff for BS14039.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9918881..9919108 17..244 100 -> Plus
arm_2L 9919170..9919316 245..391 100 -> Plus
arm_2L 9919376..9919844 392..860 100   Plus

BS14039.pep Sequence

Translation from 16 to 861

> BS14039.pep
MMRSKVLSLVARAGSNRMMSTATKLTTVEVNDKTGIATLTMNRPPVNGLN
LELLQDLKSSIDEIESNKSRGLILTSSSSTIFSAGLDILEMYKPDKDRIR
AFWTQLQDTWLALYGSSVPTAAAINGHSPAGGCLLATSCEYRVMVPNFTI
GLNETQLGIVAPQWFMASFLSVLPQRIAERALNQGRMFTTEEALKVGLID
ETANNKEEAIEKCVAFIGTFAKVNPLARSLTKQQFRAADLQQLQNGRKED
LEKFLFFVNQPAVQKGLGIYLEGLKKKAKKQ*

BS14039.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG4598-PB 281 CG4598-PB 1..281 1..281 1411 100 Plus
CG4598-PA 281 CG4598-PA 1..281 1..281 1411 100 Plus
CG4594-PB 280 CG4594-PB 1..280 1..280 1001 67.1 Plus
CG4594-PA 280 CG4594-PA 1..280 1..280 1001 67.1 Plus
CG4592-PB 287 CG4592-PB 1..286 1..277 796 55.2 Plus