Clone Sequence Records
BS14039.3prime Sequence
703 bp (670 high quality bases) assembled on 2006-10-13
> BS14039.3prime
ATGGTCTAGAAAGCTTTTATTGCTTCTTGGCCTTCTTCTTCAGACCCTCG
AGATAAATGCCCAGACCCTTCTGTACCGCCGGCTGGTTGACAAAGAACAG
GAATTTCTCCAGATCCTCCTTCCGTCCGTTCTGCAGTTGCTGTAGATCAG
CAGCTCGGAATTGCTGCTTGGTCAGTGACCTGGCTAGCGGATTGACCTTG
GCAAAGGTGCCAATGAAGGCGACACACTTTTCAATAGCCTCCTCTTTGTT
ATTGGCAGTCTCATCGATGAGGCCCACCTTCAGGGCCTCCTCCGTGGTGA
ACATGCGACCCTGGTTGAGGGCGCGTTCCGCAATTCGCTGTGGCAAGACG
CTCAGGAAAGAGGCCATAAACCACTGGGGCGCCACAATACCCAGCTGTGT
TTCGTTCAGGCCGATGGTAAAGTTTGGCACCATGACCCGATACTCGCAGG
ATGTGGCTAGCAAGCATCCACCGGCAGGGGAGTGTCCATTGATGGCTGCC
GCTGTGGGAACACTGCTGCCGTAAAGGGCCAGCCAAGTATCCTGCAGTTG
CGTCCAGAAGGCGCGAATCCTGTCCTTATCCGGCTTGTACATCTCCAGAA
TATCCAAACCAGCTGAGAATATTGTGGAGCTAGACGAAGTCAAAATGAGT
CCGCGACTCTTATTGCTCTCGATTTCATCAATGGAGCTCTTCAGGTCCTG
CAG
BS14039.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4598-PA | 846 | CG4598-RA | 160..846 | 703..17 | 3435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:48:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4598-RB | 1216 | CG4598-RB | 256..942 | 703..17 | 3435 | 100 | Minus |
CG4598-RA | 997 | CG4598-RA | 256..942 | 703..17 | 3435 | 100 | Minus |
CG4594-RB | 1103 | CG4594-RB | 287..829 | 698..156 | 390 | 71.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:48:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9919376..9919846 | 487..17 | 2355 | 100 | Minus |
2L | 23513712 | 2L | 9919169..9919317 | 635..487 | 745 | 100 | Minus |
2L | 23513712 | 2L | 9919040..9919108 | 703..635 | 345 | 100 | Minus |
2L | 23513712 | 2L | 9920857..9921185 | 484..156 | 265 | 72 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:48:06 has no hits.
BS14039.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:05 Download gff for
BS14039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4598-PA | 160..846 | 17..703 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:47 Download gff for
BS14039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4598-RA | 256..953 | 4..703 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:36 Download gff for
BS14039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4598-RA | 256..953 | 4..703 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:36 Download gff for
BS14039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9919040..9919108 | 635..703 | 100 | -> | Minus |
2L | 9919170..9919316 | 488..634 | 100 | -> | Minus |
2L | 9919376..9919857 | 4..487 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:47 Download gff for
BS14039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9919040..9919108 | 635..703 | 100 | -> | Minus |
arm_2L | 9919170..9919316 | 488..634 | 100 | -> | Minus |
arm_2L | 9919376..9919857 | 4..487 | 98 | | Minus |
BS14039.5prime Sequence
748 bp (685 high quality bases) assembled on 2006-10-13
> BS14039.5prime
GAAGTTATCAGTCGACATGATGCGATCGAAAGTCTTGAGCTTGGTGGCCC
GTGCTGGCTCCAACCGTATGATGTCCACTGCCACCAAGTTGACCACAGTG
GAGGTCAACGACAAGACCGGCATCGCCACCCTCACGATGAACCGGCCACC
CGTAAATGGTCTTAACTTGGAACTGCTGCAGGACCTGAAGAGCTCCATTG
ATGAAATCGAGAGCAATAAGAGTCGCGGACTCATTTTGACTTCGTCTAGC
TCCACAATATTCTCAGCTGGTTTGGATATTCTGGAGATGTACAAGCCGGA
TAAGGACAGGATTCGCGCCTTCTGGACGCAACTGCAGGATACTTGGCTGG
CCCTTTACGGCAGCAGTGTTCCCACAGCGGCAGCCATCAATGGACACTCC
CCTGCCGGTGGATGCTTGCTAGCCACATCCTGCGAGTATCGGGTCATGGT
GCCAAACTTTACCATCGGCCTGAACGAAACACAGCTGGGTATTGTGGCGC
CCCAGTGGTTTATGGCCTCTTTCCTGAGCGTCTTGCCACAGCGAATTGCG
GAACGCGCCCTCAACCAGGGTCGCATGTTCACCACGGAGGAGGCCCTGAA
GGTGGGCCTCATCGATGAGACTGCCAATAACAAAGAGGAGGCTATTGAAA
AGTGTGTCGCCTTCATTTGGCACCTTTGCCAAGGTCAATCCGCTAGCCAG
GTCACTGACCAAGCAGCAATTCCGAGCTGCTGATCTACAGCAACTGCA
BS14039.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4598-PA | 846 | CG4598-RA | 1..651 | 17..667 | 3255 | 100 | Plus |
CG4598-PA | 846 | CG4598-RA | 650..731 | 667..748 | 410 | 100 | Plus |
CG4594-PA | 843 | CG4594-RA | 55..131 | 71..147 | 185 | 89.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:17:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4598-RB | 1216 | CG4598-RB | 97..827 | 17..748 | 3635 | 99.9 | Plus |
CG4598-RA | 997 | CG4598-RA | 97..827 | 17..748 | 3635 | 99.9 | Plus |
CG4594-RB | 1103 | CG4594-RB | 177..829 | 71..724 | 575 | 73 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:17:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9919376..9919731 | 392..748 | 1735 | 99.7 | Plus |
2L | 23513712 | 2L | 9918881..9919108 | 17..244 | 1140 | 100 | Plus |
2L | 23513712 | 2L | 9919169..9919317 | 244..392 | 745 | 100 | Plus |
2L | 23513712 | 2L | 9920428..9920594 | 71..237 | 325 | 79.6 | Plus |
2L | 23513712 | 2L | 9920857..9921185 | 395..724 | 220 | 71.8 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:17:22 has no hits.
BS14039.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:05 Download gff for
BS14039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4598-PA | 1..730 | 17..747 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:36:16 Download gff for
BS14039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4598-RA | 87..826 | 7..747 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:27 Download gff for
BS14039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4598-RA | 87..826 | 7..747 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:27 Download gff for
BS14039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9918871..9919108 | 8..244 | 98 | -> | Plus |
2L | 9919170..9919316 | 245..391 | 100 | -> | Plus |
2L | 9919376..9919730 | 392..747 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:36:16 Download gff for
BS14039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9918871..9919108 | 8..244 | 98 | -> | Plus |
arm_2L | 9919170..9919316 | 245..391 | 100 | -> | Plus |
arm_2L | 9919376..9919730 | 392..747 | 99 | | Plus |
BS14039.complete Sequence
878 bp assembled on 2006-11-01
GenBank Submission: FJ637589
> BS14039.complete
GAAGTTATCAGTCGACATGATGCGATCGAAAGTCTTGAGCTTGGTGGCCC
GTGCTGGCTCCAACCGTATGATGTCCACTGCCACCAAGTTGACCACAGTG
GAGGTCAACGACAAGACCGGCATCGCCACCCTCACGATGAACCGGCCACC
CGTAAATGGTCTTAACTTGGAACTGCTGCAGGACCTGAAGAGCTCCATTG
ATGAAATCGAGAGCAATAAGAGTCGCGGACTCATTTTGACTTCGTCTAGC
TCCACAATATTCTCAGCTGGTTTGGATATTCTGGAGATGTACAAGCCGGA
TAAGGACAGGATTCGCGCCTTCTGGACGCAACTGCAGGATACTTGGCTGG
CCCTTTACGGCAGCAGTGTTCCCACAGCGGCAGCCATCAATGGACACTCC
CCTGCCGGTGGATGCTTGCTAGCCACATCCTGCGAGTATCGGGTCATGGT
GCCAAACTTTACCATCGGCCTGAACGAAACACAGCTGGGTATTGTGGCGC
CCCAGTGGTTTATGGCCTCTTTCCTGAGCGTCTTGCCACAGCGAATTGCG
GAACGCGCCCTCAACCAGGGTCGCATGTTCACCACGGAGGAGGCCCTGAA
GGTGGGCCTCATCGATGAGACTGCCAATAACAAAGAGGAGGCTATTGAAA
AGTGTGTCGCCTTCATTGGCACCTTTGCCAAGGTCAATCCGCTAGCCAGG
TCACTGACCAAGCAGCAATTCCGAGCTGCTGATCTACAGCAACTGCAGAA
CGGACGGAAGGAGGATCTGGAGAAATTCCTGTTCTTTGTCAACCAGCCGG
CGGTACAGAAGGGTCTGGGCATTTATCTCGAGGGTCTGAAGAAGAAGGCC
AAGAAGCAATAAAAGCTTTCTAGACCAT
BS14039.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:40:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4598-RB | 846 | CG4598-PB | 1..846 | 17..862 | 4230 | 100 | Plus |
CG4598-RA | 846 | CG4598-PA | 1..846 | 17..862 | 4230 | 100 | Plus |
CG4594-RB | 843 | CG4594-PB | 55..707 | 71..723 | 595 | 72.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:40:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4598-RB | 1216 | CG4598-RB | 97..942 | 17..862 | 4230 | 100 | Plus |
CG4598-RA | 997 | CG4598-RA | 97..942 | 17..862 | 4230 | 100 | Plus |
CG4594-RB | 1103 | CG4594-RB | 177..829 | 71..723 | 595 | 72.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:40:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9919376..9919846 | 392..862 | 2355 | 100 | Plus |
2L | 23513712 | 2L | 9918881..9919108 | 17..244 | 1140 | 100 | Plus |
2L | 23513712 | 2L | 9919169..9919317 | 244..392 | 745 | 100 | Plus |
2L | 23513712 | 2L | 9920428..9920594 | 71..237 | 325 | 79.6 | Plus |
2L | 23513712 | 2L | 9920857..9921185 | 395..723 | 265 | 72 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:40:13 has no hits.
BS14039.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:15 Download gff for
BS14039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4598-RA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:34 Download gff for
BS14039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4598-RA | 70..936 | 7..875 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:35:02 Download gff for
BS14039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4598-RA | 97..940 | 17..860 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:15 Download gff for
BS14039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4598-RA | 70..936 | 7..875 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:48 Download gff for
BS14039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4598-RA | 97..940 | 17..860 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:48 Download gff for
BS14039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9918881..9919108 | 17..244 | 100 | -> | Plus |
2L | 9919170..9919316 | 245..391 | 100 | -> | Plus |
2L | 9919376..9919844 | 392..860 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:02 Download gff for
BS14039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9918881..9919108 | 17..244 | 100 | -> | Plus |
arm_2L | 9919170..9919316 | 245..391 | 100 | -> | Plus |
arm_2L | 9919376..9919844 | 392..860 | 100 | | Plus |
BS14039.pep Sequence
Translation from 16 to 861
> BS14039.pep
MMRSKVLSLVARAGSNRMMSTATKLTTVEVNDKTGIATLTMNRPPVNGLN
LELLQDLKSSIDEIESNKSRGLILTSSSSTIFSAGLDILEMYKPDKDRIR
AFWTQLQDTWLALYGSSVPTAAAINGHSPAGGCLLATSCEYRVMVPNFTI
GLNETQLGIVAPQWFMASFLSVLPQRIAERALNQGRMFTTEEALKVGLID
ETANNKEEAIEKCVAFIGTFAKVNPLARSLTKQQFRAADLQQLQNGRKED
LEKFLFFVNQPAVQKGLGIYLEGLKKKAKKQ*
BS14039.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4598-PB | 281 | CG4598-PB | 1..281 | 1..281 | 1411 | 100 | Plus |
CG4598-PA | 281 | CG4598-PA | 1..281 | 1..281 | 1411 | 100 | Plus |
CG4594-PB | 280 | CG4594-PB | 1..280 | 1..280 | 1001 | 67.1 | Plus |
CG4594-PA | 280 | CG4594-PA | 1..280 | 1..280 | 1001 | 67.1 | Plus |
CG4592-PB | 287 | CG4592-PB | 1..286 | 1..277 | 796 | 55.2 | Plus |