Clone BS14040 Report

Search the DGRC for BS14040

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:140
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG1598-RA
Protein status:BS14040.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14040.3prime Sequence

578 bp (544 high quality bases) assembled on 2006-10-13

> BS14040.3prime
ATGGTCTAGAAAGCTTCTATTCCTTGGGCTCGCCCTTGGGGTTGTAGGGC
TTCATAAGGTTCTCGGAGAAAGAACGGATGCTCTCTGGACCGCGCACCTC
TTTCTCGAGGAGCGGCAACTTGGTTACGTGGAAGTCTTCATACAGGTCGG
CAATCTGGTCCAGGTACTTCTCCTGAATCTTGAAGCGGGAGGCGCACATG
CTGCACGAGTCGTGCGAGTTCTGCAGAAACAGCAGTTGGTTTACAATGAT
GTTGTGGACGTCGATGCCGCACTTGGTTAGCTCTTGCACAAGTCGTTCCG
TCTCGTACAGCGAGAAGAACTCTGCTATGCACACGCAGACGAATGTAGTT
TGATCTGGGTTCTTGAACTGCTCGTTGACCTGGGTGATAACGCGCAGCAT
GTCGTCCAGCTTCTGGGAGAGTGTGTCAGCGTTCACATCAGCCATGCCCC
GCATGGAAACGAACTGTGACAGCAGGGGCGCCACCTTCATCTTGAGCCGC
AGCAGCTTGCCCAGCCCCTTCTCCACCACCTGGGGAAATGCAATCAGACG
CACCGTGTGTCCCGTGGGCGCCGTGTCG

BS14040.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG1598-PA 1011 CG1598-RA 450..1011 578..17 2735 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG1598-RA 1259 CG1598-RA 556..1117 578..17 2765 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:18:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7538374..7538712 17..355 1695 100 Plus
2R 25286936 2R 7538771..7538994 355..578 1075 98.7 Plus
Blast to na_te.dros performed on 2015-02-12 11:18:32 has no hits.

BS14040.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:06 Download gff for BS14040.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1598-PA 450..1011 17..578 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:47:16 Download gff for BS14040.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1598-RA 556..1117 17..578 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:34:56 Download gff for BS14040.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1598-RA 556..1117 17..578 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:34:56 Download gff for BS14040.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7538374..7538712 17..355 100 <- Plus
2R 7538772..7538994 356..578 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:47:16 Download gff for BS14040.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3425879..3426217 17..355 100 <- Plus
arm_2R 3426277..3426499 356..578 98   Plus

BS14040.5prime Sequence

655 bp (547 high quality bases) assembled on 2006-10-13

> BS14040.5prime
GAAGTTATCAGTCGACATGGCCGACAATTTGGAGCCCCTGGAGCCCAGCC
TGCAGAATCTCGTCGAGCAGGACTCCCTCAAGTGGATCTTCGTGGGCGGA
AAAGGCGGCGTGGGCAAGACGACTTGCAGTTCTAGCCTAGCCGTTCAGCT
GTCGAAAGTGCGCGAATCCGTGCTAATCATATCCACAGATCCGGCGCACA
ACATATCGGATGCATTCGATCAGAAGTTCACCAAGGTGCCGACAAAGGTA
AATGGCTTTGACAACCTGTTCGCCATGGAAATCGATCCAAATGCCGGTCT
CAACGAGCTGCCCGAGGAGTACTTCGATGGCGAAAATGAGGCGCTGCGCG
TGAGCAAGGGCGTCATGCAGGAGATGATCAACGCCCTGCCCGGCATCGAC
GAGGCGATGAGCTATGCAGAGGTTATGAAGCTGGTCAAGGGCATGAACTT
CTCGGTAGTCGTCTTCGACACGGCGCCCACGGGACACACGCTGCGTCTGA
TTGCATTTCCCCAGGTGGTGGAGAAGGGGCTGGGCAAGCTGCTGCGGCTC
AAGATGAAGGTGGCGCCCCTGCTGTCACAGTTCGTCTCCATGCTGGGCTT
GGCTGATGTGAACGCTGACACACTCTCCCAGAAGCTGGACGACATGCTGC
GCGTT

BS14040.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG1598-PA 1011 CG1598-RA 1..639 17..655 3170 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:08:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1598-RA 1259 CG1598-RA 107..745 17..655 3180 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:08:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7538805..7539214 655..246 2035 99.8 Minus
2R 25286936 2R 7539295..7539416 249..128 610 100 Minus
2R 25286936 2R 7539478..7539590 129..17 565 100 Minus
Blast to na_te.dros performed on 2015-02-08 12:08:32 has no hits.

BS14040.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:06 Download gff for BS14040.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1598-PA 1..639 17..655 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:07 Download gff for BS14040.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1598-RA 107..745 17..655 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:51 Download gff for BS14040.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1598-RA 107..745 17..655 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:51 Download gff for BS14040.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7538805..7539212 248..655 99 <- Minus
2R 7539297..7539414 130..247 100 <- Minus
2R 7539478..7539590 17..129 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:07 Download gff for BS14040.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3426802..3426919 130..247 100 <- Minus
arm_2R 3426983..3427095 17..129 100   Minus
arm_2R 3426310..3426717 248..655 99 <- Minus

BS14040.complete Sequence

1043 bp assembled on 2006-11-01

GenBank Submission: FJ638857

> BS14040.complete
GAAGTTATCAGTCGACATGGCCGACAATTTGGAGCCCCTGGAGCCCAGCC
TGCAGAATCTCGTCGAGCAGGACTCCCTCAAGTGGATCTTCGTGGGCGGA
AAAGGCGGCGTGGGCAAGACGACTTGCAGTTCTAGCCTAGCCGTTCAGCT
GTCGAAAGTGCGCGAATCCGTGCTAATCATATCCACAGATCCGGCGCACA
ACATATCGGATGCATTCGATCAGAAGTTCACCAAGGTGCCGACAAAGGTA
AATGGCTTTGACAACCTGTTCGCCATGGAAATCGATCCAAATGCCGGTCT
CAACGAGCTGCCCGAGGAGTACTTCGATGGCGAAAATGAGGCGCTGCGCG
TGAGCAAGGGCGTCATGCAGGAGATGATCAACGCCCTGCCCGGCATCGAC
GAGGCGATGAGCTATGCAGAGGTTATGAAGCTGGTCAAGGGCATGAACTT
CTCGGTAGTCGTCTTCGACACGGCGCCCACGGGACACACGCTGCGTCTGA
TTGCATTTCCCCAGGTGGTGGAGAAGGGGCTGGGCAAGCTGCTGCGGCTC
AAGATGAAGGTGGCGCCCCTGCTGTCACAGTTCGTCTCCATGCTGGGCAT
GGCTGATGTGAACGCTGACACACTCTCCCAGAAGCTGGACGACATGCTGC
GCGTTATCACCCAGGTCAACGAGCAGTTCAAGAACCCAGATCAAACTACA
TTCGTCTGCGTGTGCATAGCAGAGTTCTTCTCGCTGTACGAGACGGAACG
ACTTGTGCAAGAGCTAACCAAGTGCGGCATCGACGTCCACAACATCATTG
TAAACCAACTGCTGTTTCTGCAGAACTCGCACGACTCGTGCAGCATGTGC
GCCTCCCGCTTCAAGATTCAGGAGAAGTACCTGGACCAGATTGCCGACCT
GTATGAAGACTTCCACGTAACCAAGTTGCCGCTCCTCGAGAAAGAGGTGC
GCGGTCCAGAGAGCATCCGTTCTTTCTCCGAGAACCTTATGAAGCCCTAC
AACCCCAAGGGCGAGCCCAAGGAATAGAAGCTTTCTAGACCAT

BS14040.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG1598-RA 1011 CG1598-PA 1..1011 17..1027 5055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:47:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG1598-RA 1259 CG1598-RA 107..1117 17..1027 5055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:47:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7538771..7539214 689..246 2220 100 Minus
2R 25286936 2R 7538374..7538712 1027..689 1695 100 Minus
2R 25286936 2R 7539295..7539416 249..128 610 100 Minus
2R 25286936 2R 7539478..7539590 129..17 565 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:47:54 has no hits.

BS14040.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:16 Download gff for BS14040.complete
Subject Subject Range Query Range Percent Splice Strand
CG1598-RA 1..1011 17..1027 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:35 Download gff for BS14040.complete
Subject Subject Range Query Range Percent Splice Strand
CG1598-RA 107..1117 17..1027 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:12 Download gff for BS14040.complete
Subject Subject Range Query Range Percent Splice Strand
CG1598-RA 107..1117 17..1027 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:16 Download gff for BS14040.complete
Subject Subject Range Query Range Percent Splice Strand
CG1598-RA 107..1117 17..1027 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:28 Download gff for BS14040.complete
Subject Subject Range Query Range Percent Splice Strand
CG1598-RA 107..1117 17..1027 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:28 Download gff for BS14040.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7538374..7538712 689..1027 100 <- Minus
2R 7538772..7539212 248..688 100 <- Minus
2R 7539297..7539414 130..247 100 <- Minus
2R 7539478..7539590 17..129 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:12 Download gff for BS14040.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3425879..3426217 689..1027 100 <- Minus
arm_2R 3426277..3426717 248..688 100 <- Minus
arm_2R 3426802..3426919 130..247 100 <- Minus
arm_2R 3426983..3427095 17..129 100   Minus

BS14040.pep Sequence

Translation from 16 to 1026

> BS14040.pep
MADNLEPLEPSLQNLVEQDSLKWIFVGGKGGVGKTTCSSSLAVQLSKVRE
SVLIISTDPAHNISDAFDQKFTKVPTKVNGFDNLFAMEIDPNAGLNELPE
EYFDGENEALRVSKGVMQEMINALPGIDEAMSYAEVMKLVKGMNFSVVVF
DTAPTGHTLRLIAFPQVVEKGLGKLLRLKMKVAPLLSQFVSMLGMADVNA
DTLSQKLDDMLRVITQVNEQFKNPDQTTFVCVCIAEFFSLYETERLVQEL
TKCGIDVHNIIVNQLLFLQNSHDSCSMCASRFKIQEKYLDQIADLYEDFH
VTKLPLLEKEVRGPESIRSFSENLMKPYNPKGEPKE*

BS14040.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG1598-PA 336 CG1598-PA 1..336 1..336 1719 100 Plus