Clone Sequence Records
BS14040.3prime Sequence
578 bp (544 high quality bases) assembled on 2006-10-13
> BS14040.3prime
ATGGTCTAGAAAGCTTCTATTCCTTGGGCTCGCCCTTGGGGTTGTAGGGC
TTCATAAGGTTCTCGGAGAAAGAACGGATGCTCTCTGGACCGCGCACCTC
TTTCTCGAGGAGCGGCAACTTGGTTACGTGGAAGTCTTCATACAGGTCGG
CAATCTGGTCCAGGTACTTCTCCTGAATCTTGAAGCGGGAGGCGCACATG
CTGCACGAGTCGTGCGAGTTCTGCAGAAACAGCAGTTGGTTTACAATGAT
GTTGTGGACGTCGATGCCGCACTTGGTTAGCTCTTGCACAAGTCGTTCCG
TCTCGTACAGCGAGAAGAACTCTGCTATGCACACGCAGACGAATGTAGTT
TGATCTGGGTTCTTGAACTGCTCGTTGACCTGGGTGATAACGCGCAGCAT
GTCGTCCAGCTTCTGGGAGAGTGTGTCAGCGTTCACATCAGCCATGCCCC
GCATGGAAACGAACTGTGACAGCAGGGGCGCCACCTTCATCTTGAGCCGC
AGCAGCTTGCCCAGCCCCTTCTCCACCACCTGGGGAAATGCAATCAGACG
CACCGTGTGTCCCGTGGGCGCCGTGTCG
BS14040.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1598-PA | 1011 | CG1598-RA | 450..1011 | 578..17 | 2735 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:18:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1598-RA | 1259 | CG1598-RA | 556..1117 | 578..17 | 2765 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:18:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7538374..7538712 | 17..355 | 1695 | 100 | Plus |
2R | 25286936 | 2R | 7538771..7538994 | 355..578 | 1075 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:18:32 has no hits.
BS14040.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:06 Download gff for
BS14040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1598-PA | 450..1011 | 17..578 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:47:16 Download gff for
BS14040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1598-RA | 556..1117 | 17..578 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:34:56 Download gff for
BS14040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1598-RA | 556..1117 | 17..578 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:34:56 Download gff for
BS14040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7538374..7538712 | 17..355 | 100 | <- | Plus |
2R | 7538772..7538994 | 356..578 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:47:16 Download gff for
BS14040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3425879..3426217 | 17..355 | 100 | <- | Plus |
arm_2R | 3426277..3426499 | 356..578 | 98 | | Plus |
BS14040.5prime Sequence
655 bp (547 high quality bases) assembled on 2006-10-13
> BS14040.5prime
GAAGTTATCAGTCGACATGGCCGACAATTTGGAGCCCCTGGAGCCCAGCC
TGCAGAATCTCGTCGAGCAGGACTCCCTCAAGTGGATCTTCGTGGGCGGA
AAAGGCGGCGTGGGCAAGACGACTTGCAGTTCTAGCCTAGCCGTTCAGCT
GTCGAAAGTGCGCGAATCCGTGCTAATCATATCCACAGATCCGGCGCACA
ACATATCGGATGCATTCGATCAGAAGTTCACCAAGGTGCCGACAAAGGTA
AATGGCTTTGACAACCTGTTCGCCATGGAAATCGATCCAAATGCCGGTCT
CAACGAGCTGCCCGAGGAGTACTTCGATGGCGAAAATGAGGCGCTGCGCG
TGAGCAAGGGCGTCATGCAGGAGATGATCAACGCCCTGCCCGGCATCGAC
GAGGCGATGAGCTATGCAGAGGTTATGAAGCTGGTCAAGGGCATGAACTT
CTCGGTAGTCGTCTTCGACACGGCGCCCACGGGACACACGCTGCGTCTGA
TTGCATTTCCCCAGGTGGTGGAGAAGGGGCTGGGCAAGCTGCTGCGGCTC
AAGATGAAGGTGGCGCCCCTGCTGTCACAGTTCGTCTCCATGCTGGGCTT
GGCTGATGTGAACGCTGACACACTCTCCCAGAAGCTGGACGACATGCTGC
GCGTT
BS14040.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1598-PA | 1011 | CG1598-RA | 1..639 | 17..655 | 3170 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:08:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1598-RA | 1259 | CG1598-RA | 107..745 | 17..655 | 3180 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:08:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7538805..7539214 | 655..246 | 2035 | 99.8 | Minus |
2R | 25286936 | 2R | 7539295..7539416 | 249..128 | 610 | 100 | Minus |
2R | 25286936 | 2R | 7539478..7539590 | 129..17 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:08:32 has no hits.
BS14040.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:06 Download gff for
BS14040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1598-PA | 1..639 | 17..655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:07 Download gff for
BS14040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1598-RA | 107..745 | 17..655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:51 Download gff for
BS14040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1598-RA | 107..745 | 17..655 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:51 Download gff for
BS14040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7538805..7539212 | 248..655 | 99 | <- | Minus |
2R | 7539297..7539414 | 130..247 | 100 | <- | Minus |
2R | 7539478..7539590 | 17..129 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:07 Download gff for
BS14040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3426802..3426919 | 130..247 | 100 | <- | Minus |
arm_2R | 3426983..3427095 | 17..129 | 100 | | Minus |
arm_2R | 3426310..3426717 | 248..655 | 99 | <- | Minus |
BS14040.complete Sequence
1043 bp assembled on 2006-11-01
GenBank Submission: FJ638857
> BS14040.complete
GAAGTTATCAGTCGACATGGCCGACAATTTGGAGCCCCTGGAGCCCAGCC
TGCAGAATCTCGTCGAGCAGGACTCCCTCAAGTGGATCTTCGTGGGCGGA
AAAGGCGGCGTGGGCAAGACGACTTGCAGTTCTAGCCTAGCCGTTCAGCT
GTCGAAAGTGCGCGAATCCGTGCTAATCATATCCACAGATCCGGCGCACA
ACATATCGGATGCATTCGATCAGAAGTTCACCAAGGTGCCGACAAAGGTA
AATGGCTTTGACAACCTGTTCGCCATGGAAATCGATCCAAATGCCGGTCT
CAACGAGCTGCCCGAGGAGTACTTCGATGGCGAAAATGAGGCGCTGCGCG
TGAGCAAGGGCGTCATGCAGGAGATGATCAACGCCCTGCCCGGCATCGAC
GAGGCGATGAGCTATGCAGAGGTTATGAAGCTGGTCAAGGGCATGAACTT
CTCGGTAGTCGTCTTCGACACGGCGCCCACGGGACACACGCTGCGTCTGA
TTGCATTTCCCCAGGTGGTGGAGAAGGGGCTGGGCAAGCTGCTGCGGCTC
AAGATGAAGGTGGCGCCCCTGCTGTCACAGTTCGTCTCCATGCTGGGCAT
GGCTGATGTGAACGCTGACACACTCTCCCAGAAGCTGGACGACATGCTGC
GCGTTATCACCCAGGTCAACGAGCAGTTCAAGAACCCAGATCAAACTACA
TTCGTCTGCGTGTGCATAGCAGAGTTCTTCTCGCTGTACGAGACGGAACG
ACTTGTGCAAGAGCTAACCAAGTGCGGCATCGACGTCCACAACATCATTG
TAAACCAACTGCTGTTTCTGCAGAACTCGCACGACTCGTGCAGCATGTGC
GCCTCCCGCTTCAAGATTCAGGAGAAGTACCTGGACCAGATTGCCGACCT
GTATGAAGACTTCCACGTAACCAAGTTGCCGCTCCTCGAGAAAGAGGTGC
GCGGTCCAGAGAGCATCCGTTCTTTCTCCGAGAACCTTATGAAGCCCTAC
AACCCCAAGGGCGAGCCCAAGGAATAGAAGCTTTCTAGACCAT
BS14040.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:47:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1598-RA | 1011 | CG1598-PA | 1..1011 | 17..1027 | 5055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:47:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1598-RA | 1259 | CG1598-RA | 107..1117 | 17..1027 | 5055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:47:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7538771..7539214 | 689..246 | 2220 | 100 | Minus |
2R | 25286936 | 2R | 7538374..7538712 | 1027..689 | 1695 | 100 | Minus |
2R | 25286936 | 2R | 7539295..7539416 | 249..128 | 610 | 100 | Minus |
2R | 25286936 | 2R | 7539478..7539590 | 129..17 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:47:54 has no hits.
BS14040.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:16 Download gff for
BS14040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1598-RA | 1..1011 | 17..1027 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:35 Download gff for
BS14040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1598-RA | 107..1117 | 17..1027 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:12 Download gff for
BS14040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1598-RA | 107..1117 | 17..1027 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:16 Download gff for
BS14040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1598-RA | 107..1117 | 17..1027 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:28 Download gff for
BS14040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1598-RA | 107..1117 | 17..1027 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:28 Download gff for
BS14040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7538374..7538712 | 689..1027 | 100 | <- | Minus |
2R | 7538772..7539212 | 248..688 | 100 | <- | Minus |
2R | 7539297..7539414 | 130..247 | 100 | <- | Minus |
2R | 7539478..7539590 | 17..129 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:12 Download gff for
BS14040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3425879..3426217 | 689..1027 | 100 | <- | Minus |
arm_2R | 3426277..3426717 | 248..688 | 100 | <- | Minus |
arm_2R | 3426802..3426919 | 130..247 | 100 | <- | Minus |
arm_2R | 3426983..3427095 | 17..129 | 100 | | Minus |
BS14040.pep Sequence
Translation from 16 to 1026
> BS14040.pep
MADNLEPLEPSLQNLVEQDSLKWIFVGGKGGVGKTTCSSSLAVQLSKVRE
SVLIISTDPAHNISDAFDQKFTKVPTKVNGFDNLFAMEIDPNAGLNELPE
EYFDGENEALRVSKGVMQEMINALPGIDEAMSYAEVMKLVKGMNFSVVVF
DTAPTGHTLRLIAFPQVVEKGLGKLLRLKMKVAPLLSQFVSMLGMADVNA
DTLSQKLDDMLRVITQVNEQFKNPDQTTFVCVCIAEFFSLYETERLVQEL
TKCGIDVHNIIVNQLLFLQNSHDSCSMCASRFKIQEKYLDQIADLYEDFH
VTKLPLLEKEVRGPESIRSFSENLMKPYNPKGEPKE*
BS14040.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1598-PA | 336 | CG1598-PA | 1..336 | 1..336 | 1719 | 100 | Plus |