Clone Sequence Records
BS14042.3prime Sequence
515 bp (450 high quality bases) assembled on 2006-10-13
> BS14042.3prime
ATGGTCTAGAAAGCTTTCAGGCGAAAGTCACTTGGTAGAAGAGCCACTCT
TCCATGAACGACGGCACAAACGCCTTGGTGGTGGTGAACTTCACCTTGGG
ACGCAGCAAATTCAACTGCTCCTCGAATAGACGCAGCTGCACCTTGCAGG
TGGACCCATTGCCATGAGTCAAATACTTTCCGTCGGGTTTCAGCACCTTG
AAGGAGTGCTCGAAGATGGTACGAATGAAATCCCAGGTCTCGCCCTCCGG
GGCATCGGTTATGGGTATGTCCGTAAGATCCCCAAAAACGTAGTCGAACT
TGCGGCCCTCGGCGATGAACTTCTTCAAGTACTCCACACAGTCGCCCACA
ATGATCTCGTACTGATCGCCCTTGCGTTTCTCCAGCACATCGCCGCAGAT
CACGTTGAGGTATTTTGTTGCAGGTTTGCATCACAAGCTTCATCGATCTC
CAGCATCACCACATGCTTCGGATTCTCCTTGAGTAGCTCGGACAACAAGG
CGCCCTCACCGCCGC
BS14042.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:20:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4300-PA | 1104 | CG4300-RA | 608..1104 | 515..17 | 2365 | 99.1 | Minus |
CG4300-PB | 1101 | CG4300-RB | 605..1101 | 515..17 | 2365 | 99.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:56:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4300-RD | 1983 | CG4300-RD | 685..1187 | 515..12 | 2420 | 99 | Minus |
CG4300-RC | 1980 | CG4300-RC | 682..1184 | 515..12 | 2420 | 99 | Minus |
CG4300-RB | 1980 | CG4300-RB | 682..1184 | 515..12 | 2420 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:56:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12272458..12272954 | 17..515 | 2365 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:56:09 has no hits.
BS14042.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:07 Download gff for
BS14042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4300-PB | 605..1101 | 17..515 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:41:21 Download gff for
BS14042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4300-RA | 685..1190 | 6..515 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:00:23 Download gff for
BS14042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4300-RB | 682..1187 | 6..515 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:00:23 Download gff for
BS14042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12272449..12272954 | 6..515 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:41:21 Download gff for
BS14042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12265549..12266054 | 6..515 | 98 | | Plus |
BS14042.5prime Sequence
520 bp (434 high quality bases) assembled on 2006-10-13
> BS14042.5prime
GAAGTTATCAGTCGACATGGCGGCCCAGACGATACTGTTTGATTTCACGC
TGGACAAGGACAAGACGGCGGATGAGGAGGCGCGCCTCCAGGTGGCCAAA
ATCCTGCGTAACGAGCTGGAGCAGCTGTTCCCCCAGCTGGAGCTGGCCTA
CTCGATGGAGTCGCCGGAAAACGGCTACTTTGCGGTGCTGCACGAGAACA
AGGACACGGTGATTACCTGCCGCATCTTCCAGCACGGCCTGCTGACGCTC
AACGTGGAGTACTTCCTGCCCGATGGCAAGGAGCCGAGCATATCCTTCGA
CAGCGGTAAGAGCCTGGAGAATGTCCTGGCAATCAAACTGAAGGCCATCA
AGGCCCAGAAGCTGCCGACGCTGAAGCGCGGCGATGTCTCCAGGTACTTC
CCATCGTCAGATGAGCGCATCATCGAGTACGACATCGACAAGGTGGTCTT
CGAGGCGCGCTCGCCCTTCCAGAAAATTCAAATCATGCACTCCAAGACCC
CTGGGCAACATGCTGCTCCT
BS14042.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:20:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4300-PB | 1101 | CG4300-RB | 1..503 | 17..520 | 2455 | 99.6 | Plus |
CG4300-PA | 1104 | CG4300-RA | 1..286 | 17..302 | 1430 | 100 | Plus |
CG4300-PA | 1104 | CG4300-RA | 394..506 | 407..520 | 505 | 98.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:15:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4300-RC | 1980 | CG4300-RC | 78..580 | 17..520 | 2480 | 99.6 | Plus |
CG4300-RB | 1980 | CG4300-RB | 78..580 | 17..520 | 2480 | 99.6 | Plus |
CG4300-RD | 1983 | CG4300-RD | 78..363 | 17..302 | 1430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:15:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12276890..12277174 | 301..17 | 1425 | 100 | Minus |
3L | 28110227 | 3L | 12274003..12274111 | 410..302 | 545 | 100 | Minus |
3L | 28110227 | 3L | 12273512..12273623 | 520..408 | 500 | 98.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:15:05 has no hits.
BS14042.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:07 Download gff for
BS14042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4300-PB | 1..503 | 17..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:37:51 Download gff for
BS14042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4300-RB | 66..580 | 2..520 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:52 Download gff for
BS14042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4300-RB | 66..580 | 2..520 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:52 Download gff for
BS14042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12273512..12273620 | 411..520 | 98 | <- | Minus |
3L | 12274003..12274111 | 302..410 | 100 | <- | Minus |
3L | 12276890..12277186 | 2..301 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:37:51 Download gff for
BS14042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12266612..12266720 | 411..520 | 98 | <- | Minus |
arm_3L | 12267103..12267211 | 302..410 | 100 | <- | Minus |
arm_3L | 12269990..12270286 | 2..301 | 98 | | Minus |
BS14042.complete Sequence
1133 bp assembled on 2009-08-24
GenBank Submission: KX805885
> BS14042.complete
GAAGTTATCAGTCGACATGGCGGCCCAGACGATACTGTTTGATTTCACGC
TGGACAAGGACAAGACGGCGGATGAGGAGGCGCGCCTCCAGGTGGCCAAA
ATCCTGCGTAACGAGCTGGAGCAGCTGTTCCCCCAGCTGGAGCTGGCCTA
CTCGATGGAGTCGCCGGAAAACGGCTACTTTGCGGTGCTGCACGAGAACA
AGGACACGGTGATTACCTGCCGCATCTTCCAGCACGGCCTGCTGACGCTC
AACGTGGAGTACTTCCTGCCCGATGGCAAGGAGCCGAGCATATCCTTCGA
CAGCGGTAAGAGCCTGGAGAATGTCCTGGCAATCAAACTGAAGGCCATCA
AGGCCCAGAAGCTGCCGACGCTGAAGCGCGGCGATGTCTCCAGGTACTTC
CCATCGTCAGATGAGCGCATCATCGAGTACGACATCGACAAGGTGGTCTT
CGAGGCGCGCTCGCCCTTCCAGAAGATTCAAATCATGCACTCCAAGACCC
TGGGCAACATGCTGCTCCTCGACGAGCTGCAGAACATTGCTGAATCCGAT
TTGATTTACACGGAGACCCTGATGTGTCGCGGCGTGGAGAACTACGAGGG
CAAGGAGATCTGCATCCTGGGCGGCGGTGATGGCGCCTTGTTGTACGAGC
TACTCAAGGAGAATCCGAAGCATGTGGTGATGCTGGAGATCGATGAGCTT
GTGATGCAAACCTGCAACAAATACCTCAACGTGATCTGCGGCGATGTGCT
GGAGAAACGCAAGGGCGATCAGTACGAGATCATTGTGGGCGACTGTGTGG
AGTACTTGAAGAAGTTCATCGCCGAGGGCCGCAAGTTCGACTACGTTTTT
GGGGATCTTACGGACATACCCATAACCGATGCCCCGGAGGGCGAGACCTG
GGATTTCATTCGTACCATCTTCGAGCACTCCTTCAAGGTGCTGAAACCCG
ACGGAAAGTATTTGACTCATGGCAATGGGTCCACCTGCAAGGTGCAGCTG
CGTCTATTCGAGGAGCAGTTGAATTTGCTGCGTCCCAAGGTGAAGTTCAC
CACCACCAAGGCGTTTGTGCCGTCGTTCATGGAAGAGTGGCTCTTCTACC
AAGTGACTTTCGCCTGAAAGCTTTCTAGACCAT
BS14042.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:28:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4300-RC | 1374 | CG4300-PC | 1..1101 | 17..1117 | 5505 | 100 | Plus |
CG4300-RB | 1101 | CG4300-PB | 1..1101 | 17..1117 | 5505 | 100 | Plus |
CG4300-RD | 1377 | CG4300-PD | 394..1104 | 407..1117 | 3555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4300-RC | 1980 | CG4300-RC | 78..1178 | 17..1117 | 5505 | 100 | Plus |
CG4300-RB | 1980 | CG4300-RB | 78..1178 | 17..1117 | 5505 | 100 | Plus |
CG4300-RD | 1983 | CG4300-RD | 471..1181 | 407..1117 | 3555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12272458..12273041 | 1117..534 | 2920 | 100 | Minus |
3L | 28110227 | 3L | 12276890..12277174 | 301..17 | 1425 | 100 | Minus |
3L | 28110227 | 3L | 12273498..12273623 | 533..408 | 630 | 100 | Minus |
3L | 28110227 | 3L | 12274003..12274111 | 410..302 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:28:42 has no hits.
BS14042.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:51 Download gff for
BS14042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4300-RB | 93..1192 | 17..1116 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:46 Download gff for
BS14042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4300-RB | 78..1177 | 17..1116 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:30 Download gff for
BS14042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4300-RB | 78..1177 | 17..1116 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:30 Download gff for
BS14042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12272459..12273041 | 534..1116 | 100 | <- | Minus |
3L | 12273498..12273620 | 411..533 | 100 | <- | Minus |
3L | 12274003..12274111 | 302..410 | 100 | <- | Minus |
3L | 12276890..12277174 | 17..301 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:46 Download gff for
BS14042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12265559..12266141 | 534..1116 | 100 | <- | Minus |
arm_3L | 12266598..12266720 | 411..533 | 100 | <- | Minus |
arm_3L | 12267103..12267211 | 302..410 | 100 | <- | Minus |
arm_3L | 12269990..12270274 | 17..301 | 100 | | Minus |
BS14042.pep Sequence
Translation from 16 to 1116
> BS14042.pep
MAAQTILFDFTLDKDKTADEEARLQVAKILRNELEQLFPQLELAYSMESP
ENGYFAVLHENKDTVITCRIFQHGLLTLNVEYFLPDGKEPSISFDSGKSL
ENVLAIKLKAIKAQKLPTLKRGDVSRYFPSSDERIIEYDIDKVVFEARSP
FQKIQIMHSKTLGNMLLLDELQNIAESDLIYTETLMCRGVENYEGKEICI
LGGGDGALLYELLKENPKHVVMLEIDELVMQTCNKYLNVICGDVLEKRKG
DQYEIIVGDCVEYLKKFIAEGRKFDYVFGDLTDIPITDAPEGETWDFIRT
IFEHSFKVLKPDGKYLTHGNGSTCKVQLRLFEEQLNLLRPKVKFTTTKAF
VPSFMEEWLFYQVTFA*
BS14042.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:57:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4300-PB | 366 | CG4300-PB | 1..366 | 1..366 | 1899 | 100 | Plus |
CG4300-PC | 457 | CG4300-PC | 1..366 | 1..366 | 1899 | 100 | Plus |
CG4300-PA | 367 | CG4300-PA | 1..367 | 1..366 | 1766 | 92.9 | Plus |
CG4300-PD | 458 | CG4300-PD | 1..367 | 1..366 | 1766 | 92.9 | Plus |
SpdS-PC | 287 | CG8327-PC | 26..196 | 140..319 | 156 | 30.5 | Plus |