Clone BS14042 Report

Search the DGRC for BS14042

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:140
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG4300-RB
Protein status:BS14042.pep: full length peptide match
Sequenced Size:1133

Clone Sequence Records

BS14042.3prime Sequence

515 bp (450 high quality bases) assembled on 2006-10-13

> BS14042.3prime
ATGGTCTAGAAAGCTTTCAGGCGAAAGTCACTTGGTAGAAGAGCCACTCT
TCCATGAACGACGGCACAAACGCCTTGGTGGTGGTGAACTTCACCTTGGG
ACGCAGCAAATTCAACTGCTCCTCGAATAGACGCAGCTGCACCTTGCAGG
TGGACCCATTGCCATGAGTCAAATACTTTCCGTCGGGTTTCAGCACCTTG
AAGGAGTGCTCGAAGATGGTACGAATGAAATCCCAGGTCTCGCCCTCCGG
GGCATCGGTTATGGGTATGTCCGTAAGATCCCCAAAAACGTAGTCGAACT
TGCGGCCCTCGGCGATGAACTTCTTCAAGTACTCCACACAGTCGCCCACA
ATGATCTCGTACTGATCGCCCTTGCGTTTCTCCAGCACATCGCCGCAGAT
CACGTTGAGGTATTTTGTTGCAGGTTTGCATCACAAGCTTCATCGATCTC
CAGCATCACCACATGCTTCGGATTCTCCTTGAGTAGCTCGGACAACAAGG
CGCCCTCACCGCCGC

BS14042.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:20:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG4300-PA 1104 CG4300-RA 608..1104 515..17 2365 99.1 Minus
CG4300-PB 1101 CG4300-RB 605..1101 515..17 2365 99.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:56:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG4300-RD 1983 CG4300-RD 685..1187 515..12 2420 99 Minus
CG4300-RC 1980 CG4300-RC 682..1184 515..12 2420 99 Minus
CG4300-RB 1980 CG4300-RB 682..1184 515..12 2420 99 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:56:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12272458..12272954 17..515 2365 99.2 Plus
Blast to na_te.dros performed on 2015-02-12 11:56:09 has no hits.

BS14042.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:07 Download gff for BS14042.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4300-PB 605..1101 17..515 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:41:21 Download gff for BS14042.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4300-RA 685..1190 6..515 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:00:23 Download gff for BS14042.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4300-RB 682..1187 6..515 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:00:23 Download gff for BS14042.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12272449..12272954 6..515 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:41:21 Download gff for BS14042.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12265549..12266054 6..515 98   Plus

BS14042.5prime Sequence

520 bp (434 high quality bases) assembled on 2006-10-13

> BS14042.5prime
GAAGTTATCAGTCGACATGGCGGCCCAGACGATACTGTTTGATTTCACGC
TGGACAAGGACAAGACGGCGGATGAGGAGGCGCGCCTCCAGGTGGCCAAA
ATCCTGCGTAACGAGCTGGAGCAGCTGTTCCCCCAGCTGGAGCTGGCCTA
CTCGATGGAGTCGCCGGAAAACGGCTACTTTGCGGTGCTGCACGAGAACA
AGGACACGGTGATTACCTGCCGCATCTTCCAGCACGGCCTGCTGACGCTC
AACGTGGAGTACTTCCTGCCCGATGGCAAGGAGCCGAGCATATCCTTCGA
CAGCGGTAAGAGCCTGGAGAATGTCCTGGCAATCAAACTGAAGGCCATCA
AGGCCCAGAAGCTGCCGACGCTGAAGCGCGGCGATGTCTCCAGGTACTTC
CCATCGTCAGATGAGCGCATCATCGAGTACGACATCGACAAGGTGGTCTT
CGAGGCGCGCTCGCCCTTCCAGAAAATTCAAATCATGCACTCCAAGACCC
CTGGGCAACATGCTGCTCCT

BS14042.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG4300-PB 1101 CG4300-RB 1..503 17..520 2455 99.6 Plus
CG4300-PA 1104 CG4300-RA 1..286 17..302 1430 100 Plus
CG4300-PA 1104 CG4300-RA 394..506 407..520 505 98.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG4300-RC 1980 CG4300-RC 78..580 17..520 2480 99.6 Plus
CG4300-RB 1980 CG4300-RB 78..580 17..520 2480 99.6 Plus
CG4300-RD 1983 CG4300-RD 78..363 17..302 1430 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12276890..12277174 301..17 1425 100 Minus
3L 28110227 3L 12274003..12274111 410..302 545 100 Minus
3L 28110227 3L 12273512..12273623 520..408 500 98.2 Minus
Blast to na_te.dros performed on 2015-02-10 15:15:05 has no hits.

BS14042.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:07 Download gff for BS14042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4300-PB 1..503 17..520 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:37:51 Download gff for BS14042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4300-RB 66..580 2..520 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:52 Download gff for BS14042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4300-RB 66..580 2..520 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:52 Download gff for BS14042.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12273512..12273620 411..520 98 <- Minus
3L 12274003..12274111 302..410 100 <- Minus
3L 12276890..12277186 2..301 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:37:51 Download gff for BS14042.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12266612..12266720 411..520 98 <- Minus
arm_3L 12267103..12267211 302..410 100 <- Minus
arm_3L 12269990..12270286 2..301 98   Minus

BS14042.complete Sequence

1133 bp assembled on 2009-08-24

GenBank Submission: KX805885

> BS14042.complete
GAAGTTATCAGTCGACATGGCGGCCCAGACGATACTGTTTGATTTCACGC
TGGACAAGGACAAGACGGCGGATGAGGAGGCGCGCCTCCAGGTGGCCAAA
ATCCTGCGTAACGAGCTGGAGCAGCTGTTCCCCCAGCTGGAGCTGGCCTA
CTCGATGGAGTCGCCGGAAAACGGCTACTTTGCGGTGCTGCACGAGAACA
AGGACACGGTGATTACCTGCCGCATCTTCCAGCACGGCCTGCTGACGCTC
AACGTGGAGTACTTCCTGCCCGATGGCAAGGAGCCGAGCATATCCTTCGA
CAGCGGTAAGAGCCTGGAGAATGTCCTGGCAATCAAACTGAAGGCCATCA
AGGCCCAGAAGCTGCCGACGCTGAAGCGCGGCGATGTCTCCAGGTACTTC
CCATCGTCAGATGAGCGCATCATCGAGTACGACATCGACAAGGTGGTCTT
CGAGGCGCGCTCGCCCTTCCAGAAGATTCAAATCATGCACTCCAAGACCC
TGGGCAACATGCTGCTCCTCGACGAGCTGCAGAACATTGCTGAATCCGAT
TTGATTTACACGGAGACCCTGATGTGTCGCGGCGTGGAGAACTACGAGGG
CAAGGAGATCTGCATCCTGGGCGGCGGTGATGGCGCCTTGTTGTACGAGC
TACTCAAGGAGAATCCGAAGCATGTGGTGATGCTGGAGATCGATGAGCTT
GTGATGCAAACCTGCAACAAATACCTCAACGTGATCTGCGGCGATGTGCT
GGAGAAACGCAAGGGCGATCAGTACGAGATCATTGTGGGCGACTGTGTGG
AGTACTTGAAGAAGTTCATCGCCGAGGGCCGCAAGTTCGACTACGTTTTT
GGGGATCTTACGGACATACCCATAACCGATGCCCCGGAGGGCGAGACCTG
GGATTTCATTCGTACCATCTTCGAGCACTCCTTCAAGGTGCTGAAACCCG
ACGGAAAGTATTTGACTCATGGCAATGGGTCCACCTGCAAGGTGCAGCTG
CGTCTATTCGAGGAGCAGTTGAATTTGCTGCGTCCCAAGGTGAAGTTCAC
CACCACCAAGGCGTTTGTGCCGTCGTTCATGGAAGAGTGGCTCTTCTACC
AAGTGACTTTCGCCTGAAAGCTTTCTAGACCAT

BS14042.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:28:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG4300-RC 1374 CG4300-PC 1..1101 17..1117 5505 100 Plus
CG4300-RB 1101 CG4300-PB 1..1101 17..1117 5505 100 Plus
CG4300-RD 1377 CG4300-PD 394..1104 407..1117 3555 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4300-RC 1980 CG4300-RC 78..1178 17..1117 5505 100 Plus
CG4300-RB 1980 CG4300-RB 78..1178 17..1117 5505 100 Plus
CG4300-RD 1983 CG4300-RD 471..1181 407..1117 3555 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12272458..12273041 1117..534 2920 100 Minus
3L 28110227 3L 12276890..12277174 301..17 1425 100 Minus
3L 28110227 3L 12273498..12273623 533..408 630 100 Minus
3L 28110227 3L 12274003..12274111 410..302 545 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:28:42 has no hits.

BS14042.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:51 Download gff for BS14042.complete
Subject Subject Range Query Range Percent Splice Strand
CG4300-RB 93..1192 17..1116 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:46 Download gff for BS14042.complete
Subject Subject Range Query Range Percent Splice Strand
CG4300-RB 78..1177 17..1116 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:30 Download gff for BS14042.complete
Subject Subject Range Query Range Percent Splice Strand
CG4300-RB 78..1177 17..1116 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:30 Download gff for BS14042.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12272459..12273041 534..1116 100 <- Minus
3L 12273498..12273620 411..533 100 <- Minus
3L 12274003..12274111 302..410 100 <- Minus
3L 12276890..12277174 17..301 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:46 Download gff for BS14042.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12265559..12266141 534..1116 100 <- Minus
arm_3L 12266598..12266720 411..533 100 <- Minus
arm_3L 12267103..12267211 302..410 100 <- Minus
arm_3L 12269990..12270274 17..301 100   Minus

BS14042.pep Sequence

Translation from 16 to 1116

> BS14042.pep
MAAQTILFDFTLDKDKTADEEARLQVAKILRNELEQLFPQLELAYSMESP
ENGYFAVLHENKDTVITCRIFQHGLLTLNVEYFLPDGKEPSISFDSGKSL
ENVLAIKLKAIKAQKLPTLKRGDVSRYFPSSDERIIEYDIDKVVFEARSP
FQKIQIMHSKTLGNMLLLDELQNIAESDLIYTETLMCRGVENYEGKEICI
LGGGDGALLYELLKENPKHVVMLEIDELVMQTCNKYLNVICGDVLEKRKG
DQYEIIVGDCVEYLKKFIAEGRKFDYVFGDLTDIPITDAPEGETWDFIRT
IFEHSFKVLKPDGKYLTHGNGSTCKVQLRLFEEQLNLLRPKVKFTTTKAF
VPSFMEEWLFYQVTFA*

BS14042.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG4300-PB 366 CG4300-PB 1..366 1..366 1899 100 Plus
CG4300-PC 457 CG4300-PC 1..366 1..366 1899 100 Plus
CG4300-PA 367 CG4300-PA 1..367 1..366 1766 92.9 Plus
CG4300-PD 458 CG4300-PD 1..367 1..366 1766 92.9 Plus
SpdS-PC 287 CG8327-PC 26..196 140..319 156 30.5 Plus