Clone BS14043 Report

Search the DGRC for BS14043

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:140
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG18619-RB
Protein status:BS14043.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14043.3prime Sequence

384 bp (384 high quality bases) assembled on 2006-10-13

> BS14043.3prime
ATGGTCTAGAAAGCTTTTATTCTTGTTTGAGGATTCCGAGTTCCTGAAGT
AACTGGTCATTGTTGGTTGGAGTGTTGCTTTCGCTCAACTGGTTATTCCA
TTGAATTAAGCGCTCCAGTTCCGTACGCAAAGCAACTACAGCCTTCTCCC
GATCCGCCACCAGTTCCTCCAGGTACTGATACCGCAGCTTCTTGCGCGCC
CGGCATTCCCTGGCACTTTGTCTGCTGCGTTCTAGTTTGGCTTTCATGTC
CAATTTTTCAGTAGACGTCTTTCTTCCTGGTTTTCGTCCCCTTTTTCCAC
ATTCCTTGCGCGTCACTTGTGTTTCCTCCGTTATTGACATTTTGTTGCTC
TGTATCTCCATATCAGCCATGTCGACTGATAACT

BS14043.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG18619-PB 354 CG18619-RB 1..354 370..17 1770 100 Minus
CG18619-PA 357 CG18619-RA 60..357 314..17 1490 100 Minus
CG18619-PC 282 CG18619-RC 1..261 370..110 1305 100 Minus
CG18619-PD 285 CG18619-RD 60..264 314..110 1025 100 Minus
CG18619-PA 357 CG18619-RA 1..57 370..314 285 100 Minus
CG18619-PD 285 CG18619-RD 1..57 370..314 285 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG18619-RB 627 CG18619-RB 84..437 370..17 1770 100 Minus
CG18619-RA 512 CG18619-RA 84..440 370..17 1730 99.2 Minus
CG18619-RC 516 CG18619-RC 84..441 370..17 1720 98.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:41:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10264762..10264885 233..110 620 100 Minus
2L 23513712 2L 10264947..10265039 109..17 465 100 Minus
2L 23513712 2L 10264551..10264633 314..232 415 100 Minus
2L 23513712 2L 10264208..10264264 370..314 285 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:41:54 has no hits.

BS14043.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:08 Download gff for BS14043.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18619-PB 1..354 17..370 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:15:10 Download gff for BS14043.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18619-RB 84..440 12..370 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:49:34 Download gff for BS14043.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18619-RB 84..440 12..370 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:49:34 Download gff for BS14043.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10264208..10264264 314..370 100 -> Minus
2L 10264552..10264633 232..313 100 -> Minus
2L 10264764..10264885 110..231 100 -> Minus
2L 10264947..10265042 12..109 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:15:10 Download gff for BS14043.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10264208..10264264 314..370 100 -> Minus
arm_2L 10264552..10264633 232..313 100 -> Minus
arm_2L 10264764..10264885 110..231 100 -> Minus
arm_2L 10264947..10265042 12..109 96   Minus

BS14043.5prime Sequence

384 bp (384 high quality bases) assembled on 2006-10-13

> BS14043.5prime
GAAGTTATCAGTCGACATGGCTGATATGGAGATACAGAGCAACAAAATGT
CAATAACGGAGGAAACACAAGTGACGCGCAAGGAATGTGGAAAAAGGGGA
CGAAAACCAGGAAGAAAGACGTCTACTGAAAAATTGGACATGAAAGCCAA
ACTAGAACGCAGCAGACAAAGTGCCAGGGAATGCCGGGCGCGCAAGAAGC
TGCGGTATCAGTACCTGGAGGAACTGGTGGCGGATCGGGAGAAGGCTGTA
GTTGCTTTGCGTACGGAACTGGAGCGCTTAATTCAATGGAATAACCAGTT
GAGCGAAAGCAACACTCCAACCAACAATGACCAGTTACTTCAGGAACTCG
GAATCCTCAAACAAGAATAAAAGCTTTCTAGACC

BS14043.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG18619-PB 354 CG18619-RB 1..354 17..370 1770 100 Plus
CG18619-PA 357 CG18619-RA 60..357 73..370 1490 100 Plus
CG18619-PC 282 CG18619-RC 1..261 17..277 1305 100 Plus
CG18619-PD 285 CG18619-RD 60..264 73..277 1025 100 Plus
CG18619-PA 357 CG18619-RA 1..57 17..73 285 100 Plus
CG18619-PD 285 CG18619-RD 1..57 17..73 285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG18619-RB 627 CG18619-RB 84..437 17..370 1770 100 Plus
CG18619-RA 512 CG18619-RA 84..440 17..370 1730 99.2 Plus
CG18619-RC 516 CG18619-RC 84..441 17..370 1720 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10264762..10264885 154..277 620 100 Plus
2L 23513712 2L 10264947..10265039 278..370 465 100 Plus
2L 23513712 2L 10264551..10264633 73..155 415 100 Plus
2L 23513712 2L 10264208..10264264 17..73 285 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:40:52 has no hits.

BS14043.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:08 Download gff for BS14043.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18619-PB 1..354 17..370 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:14 Download gff for BS14043.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18619-RB 84..440 17..375 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:14:38 Download gff for BS14043.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18619-RB 84..440 17..375 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:14:38 Download gff for BS14043.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10264208..10264264 17..73 100 -> Plus
2L 10264552..10264633 74..155 100 -> Plus
2L 10264764..10264885 156..277 100 -> Plus
2L 10264947..10265042 278..375 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:14 Download gff for BS14043.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10264208..10264264 17..73 100 -> Plus
arm_2L 10264552..10264633 74..155 100 -> Plus
arm_2L 10264764..10264885 156..277 100 -> Plus
arm_2L 10264947..10265042 278..375 96   Plus

BS14043.complete Sequence

386 bp assembled on 2006-11-01

GenBank Submission: FJ637590

> BS14043.complete
GAAGTTATCAGTCGACATGGCTGATATGGAGATACAGAGCAACAAAATGT
CAATAACGGAGGAAACACAAGTGACGCGCAAGGAATGTGGAAAAAGGGGA
CGAAAACCAGGAAGAAAGACGTCTACTGAAAAATTGGACATGAAAGCCAA
ACTAGAACGCAGCAGACAAAGTGCCAGGGAATGCCGGGCGCGCAAGAAGC
TGCGGTATCAGTACCTGGAGGAACTGGTGGCGGATCGGGAGAAGGCTGTA
GTTGCTTTGCGTACGGAACTGGAGCGCTTAATTCAATGGAATAACCAGTT
GAGCGAAAGCAACACTCCAACCAACAATGACCAGTTACTTCAGGAACTCG
GAATCCTCAAACAAGAATAAAAGCTTTCTAGACCAT

BS14043.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:52:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG18619-RB 354 CG18619-PB 1..354 17..370 1770 100 Plus
CG18619-RA 357 CG18619-PA 1..357 17..370 1705 99.2 Plus
CG18619-RC 282 CG18619-PC 1..282 17..294 1315 98.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:52:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG18619-RB 627 CG18619-RB 84..437 17..370 1770 100 Plus
CG18619-RA 512 CG18619-RA 84..440 17..370 1705 99.2 Plus
CG18619-RC 516 CG18619-RC 84..441 17..370 1695 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:52:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10264762..10264885 154..277 620 100 Plus
2L 23513712 2L 10264947..10265039 278..370 465 100 Plus
2L 23513712 2L 10264551..10264633 73..155 415 100 Plus
2L 23513712 2L 10264208..10264264 17..73 285 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:52:44 has no hits.

BS14043.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:18 Download gff for BS14043.complete
Subject Subject Range Query Range Percent Splice Strand
CG18619-RB 1..354 17..370 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:38 Download gff for BS14043.complete
Subject Subject Range Query Range Percent Splice Strand
CG18619-RB 78..434 17..375 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:27 Download gff for BS14043.complete
Subject Subject Range Query Range Percent Splice Strand
CG18619-RB 84..429 17..362 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:18 Download gff for BS14043.complete
Subject Subject Range Query Range Percent Splice Strand
CG18619-RB 78..434 17..375 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:17 Download gff for BS14043.complete
Subject Subject Range Query Range Percent Splice Strand
CG18619-RB 84..429 17..362 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:17 Download gff for BS14043.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10264208..10264264 17..73 100 -> Plus
2L 10264552..10264633 74..155 100 -> Plus
2L 10264764..10264885 156..277 100 -> Plus
2L 10264947..10265031 278..362 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:27 Download gff for BS14043.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10264208..10264264 17..73 100 -> Plus
arm_2L 10264552..10264633 74..155 100 -> Plus
arm_2L 10264764..10264885 156..277 100 -> Plus
arm_2L 10264947..10265031 278..362 100   Plus

BS14043.pep Sequence

Translation from 16 to 369

> BS14043.pep
MADMEIQSNKMSITEETQVTRKECGKRGRKPGRKTSTEKLDMKAKLERSR
QSARECRARKKLRYQYLEELVADREKAVVALRTELERLIQWNNQLSESNT
PTNNDQLLQELGILKQE*

BS14043.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG18619-PB 117 CG18619-PB 1..117 1..117 586 100 Plus
CG18619-PA 118 CG18619-PA 1..118 1..117 574 99.2 Plus
CG18619-PC 93 CG18619-PC 1..89 1..89 435 97.8 Plus
CG18619-PD 94 CG18619-PD 1..90 1..89 423 96.7 Plus