Clone Sequence Records
BS14043.3prime Sequence
384 bp (384 high quality bases) assembled on 2006-10-13
> BS14043.3prime
ATGGTCTAGAAAGCTTTTATTCTTGTTTGAGGATTCCGAGTTCCTGAAGT
AACTGGTCATTGTTGGTTGGAGTGTTGCTTTCGCTCAACTGGTTATTCCA
TTGAATTAAGCGCTCCAGTTCCGTACGCAAAGCAACTACAGCCTTCTCCC
GATCCGCCACCAGTTCCTCCAGGTACTGATACCGCAGCTTCTTGCGCGCC
CGGCATTCCCTGGCACTTTGTCTGCTGCGTTCTAGTTTGGCTTTCATGTC
CAATTTTTCAGTAGACGTCTTTCTTCCTGGTTTTCGTCCCCTTTTTCCAC
ATTCCTTGCGCGTCACTTGTGTTTCCTCCGTTATTGACATTTTGTTGCTC
TGTATCTCCATATCAGCCATGTCGACTGATAACT
BS14043.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18619-PB | 354 | CG18619-RB | 1..354 | 370..17 | 1770 | 100 | Minus |
CG18619-PA | 357 | CG18619-RA | 60..357 | 314..17 | 1490 | 100 | Minus |
CG18619-PC | 282 | CG18619-RC | 1..261 | 370..110 | 1305 | 100 | Minus |
CG18619-PD | 285 | CG18619-RD | 60..264 | 314..110 | 1025 | 100 | Minus |
CG18619-PA | 357 | CG18619-RA | 1..57 | 370..314 | 285 | 100 | Minus |
CG18619-PD | 285 | CG18619-RD | 1..57 | 370..314 | 285 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:41:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18619-RB | 627 | CG18619-RB | 84..437 | 370..17 | 1770 | 100 | Minus |
CG18619-RA | 512 | CG18619-RA | 84..440 | 370..17 | 1730 | 99.2 | Minus |
CG18619-RC | 516 | CG18619-RC | 84..441 | 370..17 | 1720 | 98.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:41:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10264762..10264885 | 233..110 | 620 | 100 | Minus |
2L | 23513712 | 2L | 10264947..10265039 | 109..17 | 465 | 100 | Minus |
2L | 23513712 | 2L | 10264551..10264633 | 314..232 | 415 | 100 | Minus |
2L | 23513712 | 2L | 10264208..10264264 | 370..314 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:41:54 has no hits.
BS14043.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:08 Download gff for
BS14043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18619-PB | 1..354 | 17..370 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:15:10 Download gff for
BS14043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18619-RB | 84..440 | 12..370 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:49:34 Download gff for
BS14043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18619-RB | 84..440 | 12..370 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:49:34 Download gff for
BS14043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10264208..10264264 | 314..370 | 100 | -> | Minus |
2L | 10264552..10264633 | 232..313 | 100 | -> | Minus |
2L | 10264764..10264885 | 110..231 | 100 | -> | Minus |
2L | 10264947..10265042 | 12..109 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:15:10 Download gff for
BS14043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10264208..10264264 | 314..370 | 100 | -> | Minus |
arm_2L | 10264552..10264633 | 232..313 | 100 | -> | Minus |
arm_2L | 10264764..10264885 | 110..231 | 100 | -> | Minus |
arm_2L | 10264947..10265042 | 12..109 | 96 | | Minus |
BS14043.5prime Sequence
384 bp (384 high quality bases) assembled on 2006-10-13
> BS14043.5prime
GAAGTTATCAGTCGACATGGCTGATATGGAGATACAGAGCAACAAAATGT
CAATAACGGAGGAAACACAAGTGACGCGCAAGGAATGTGGAAAAAGGGGA
CGAAAACCAGGAAGAAAGACGTCTACTGAAAAATTGGACATGAAAGCCAA
ACTAGAACGCAGCAGACAAAGTGCCAGGGAATGCCGGGCGCGCAAGAAGC
TGCGGTATCAGTACCTGGAGGAACTGGTGGCGGATCGGGAGAAGGCTGTA
GTTGCTTTGCGTACGGAACTGGAGCGCTTAATTCAATGGAATAACCAGTT
GAGCGAAAGCAACACTCCAACCAACAATGACCAGTTACTTCAGGAACTCG
GAATCCTCAAACAAGAATAAAAGCTTTCTAGACC
BS14043.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18619-PB | 354 | CG18619-RB | 1..354 | 17..370 | 1770 | 100 | Plus |
CG18619-PA | 357 | CG18619-RA | 60..357 | 73..370 | 1490 | 100 | Plus |
CG18619-PC | 282 | CG18619-RC | 1..261 | 17..277 | 1305 | 100 | Plus |
CG18619-PD | 285 | CG18619-RD | 60..264 | 73..277 | 1025 | 100 | Plus |
CG18619-PA | 357 | CG18619-RA | 1..57 | 17..73 | 285 | 100 | Plus |
CG18619-PD | 285 | CG18619-RD | 1..57 | 17..73 | 285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:40:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18619-RB | 627 | CG18619-RB | 84..437 | 17..370 | 1770 | 100 | Plus |
CG18619-RA | 512 | CG18619-RA | 84..440 | 17..370 | 1730 | 99.2 | Plus |
CG18619-RC | 516 | CG18619-RC | 84..441 | 17..370 | 1720 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:40:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10264762..10264885 | 154..277 | 620 | 100 | Plus |
2L | 23513712 | 2L | 10264947..10265039 | 278..370 | 465 | 100 | Plus |
2L | 23513712 | 2L | 10264551..10264633 | 73..155 | 415 | 100 | Plus |
2L | 23513712 | 2L | 10264208..10264264 | 17..73 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:40:52 has no hits.
BS14043.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:08 Download gff for
BS14043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18619-PB | 1..354 | 17..370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:14 Download gff for
BS14043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18619-RB | 84..440 | 17..375 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:14:38 Download gff for
BS14043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18619-RB | 84..440 | 17..375 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:14:38 Download gff for
BS14043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10264208..10264264 | 17..73 | 100 | -> | Plus |
2L | 10264552..10264633 | 74..155 | 100 | -> | Plus |
2L | 10264764..10264885 | 156..277 | 100 | -> | Plus |
2L | 10264947..10265042 | 278..375 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:14 Download gff for
BS14043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10264208..10264264 | 17..73 | 100 | -> | Plus |
arm_2L | 10264552..10264633 | 74..155 | 100 | -> | Plus |
arm_2L | 10264764..10264885 | 156..277 | 100 | -> | Plus |
arm_2L | 10264947..10265042 | 278..375 | 96 | | Plus |
BS14043.complete Sequence
386 bp assembled on 2006-11-01
GenBank Submission: FJ637590
> BS14043.complete
GAAGTTATCAGTCGACATGGCTGATATGGAGATACAGAGCAACAAAATGT
CAATAACGGAGGAAACACAAGTGACGCGCAAGGAATGTGGAAAAAGGGGA
CGAAAACCAGGAAGAAAGACGTCTACTGAAAAATTGGACATGAAAGCCAA
ACTAGAACGCAGCAGACAAAGTGCCAGGGAATGCCGGGCGCGCAAGAAGC
TGCGGTATCAGTACCTGGAGGAACTGGTGGCGGATCGGGAGAAGGCTGTA
GTTGCTTTGCGTACGGAACTGGAGCGCTTAATTCAATGGAATAACCAGTT
GAGCGAAAGCAACACTCCAACCAACAATGACCAGTTACTTCAGGAACTCG
GAATCCTCAAACAAGAATAAAAGCTTTCTAGACCAT
BS14043.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:52:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18619-RB | 354 | CG18619-PB | 1..354 | 17..370 | 1770 | 100 | Plus |
CG18619-RA | 357 | CG18619-PA | 1..357 | 17..370 | 1705 | 99.2 | Plus |
CG18619-RC | 282 | CG18619-PC | 1..282 | 17..294 | 1315 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:52:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18619-RB | 627 | CG18619-RB | 84..437 | 17..370 | 1770 | 100 | Plus |
CG18619-RA | 512 | CG18619-RA | 84..440 | 17..370 | 1705 | 99.2 | Plus |
CG18619-RC | 516 | CG18619-RC | 84..441 | 17..370 | 1695 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:52:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10264762..10264885 | 154..277 | 620 | 100 | Plus |
2L | 23513712 | 2L | 10264947..10265039 | 278..370 | 465 | 100 | Plus |
2L | 23513712 | 2L | 10264551..10264633 | 73..155 | 415 | 100 | Plus |
2L | 23513712 | 2L | 10264208..10264264 | 17..73 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:52:44 has no hits.
BS14043.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:18 Download gff for
BS14043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18619-RB | 1..354 | 17..370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:38 Download gff for
BS14043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18619-RB | 78..434 | 17..375 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:27 Download gff for
BS14043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18619-RB | 84..429 | 17..362 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:18 Download gff for
BS14043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18619-RB | 78..434 | 17..375 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:17 Download gff for
BS14043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18619-RB | 84..429 | 17..362 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:17 Download gff for
BS14043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10264208..10264264 | 17..73 | 100 | -> | Plus |
2L | 10264552..10264633 | 74..155 | 100 | -> | Plus |
2L | 10264764..10264885 | 156..277 | 100 | -> | Plus |
2L | 10264947..10265031 | 278..362 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:27 Download gff for
BS14043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10264208..10264264 | 17..73 | 100 | -> | Plus |
arm_2L | 10264552..10264633 | 74..155 | 100 | -> | Plus |
arm_2L | 10264764..10264885 | 156..277 | 100 | -> | Plus |
arm_2L | 10264947..10265031 | 278..362 | 100 | | Plus |
BS14043.pep Sequence
Translation from 16 to 369
> BS14043.pep
MADMEIQSNKMSITEETQVTRKECGKRGRKPGRKTSTEKLDMKAKLERSR
QSARECRARKKLRYQYLEELVADREKAVVALRTELERLIQWNNQLSESNT
PTNNDQLLQELGILKQE*
BS14043.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18619-PB | 117 | CG18619-PB | 1..117 | 1..117 | 586 | 100 | Plus |
CG18619-PA | 118 | CG18619-PA | 1..118 | 1..117 | 574 | 99.2 | Plus |
CG18619-PC | 93 | CG18619-PC | 1..89 | 1..89 | 435 | 97.8 | Plus |
CG18619-PD | 94 | CG18619-PD | 1..90 | 1..89 | 423 | 96.7 | Plus |