Clone Sequence Records
BS14044.3prime Sequence
413 bp (388 high quality bases) assembled on 2006-10-13
> BS14044.3prime
ATGGTCTAGAAAGCTTTTACACCTTGATTCCCGAGGCCTCGGCGGTGGCG
CGGTAGCGCTTGATGTAGATCTCATCGGGATCGTACTTGGCCTGCAGCTG
CTTCCACTCCTCGGGCTTGTTTTCGATGATGTAGCGAATGACCTTGTCGG
TGTTCTGGCGCTGCTTCTCGCTGCACTTGCTGCACTCCGTCTTCAGGGCG
TCCGGCAGGGACTTCTTGAGCTCCCGGCCCTCCGGGGTGCACTTTCCGTT
GTCCACCAGGCACTTGAAGTAGTTTCCGAAGAGGCGGTCCGACTTCAGGA
TCTCGTCGACGTCGATGTTGTCGTACTTGGTGGTGTACTTATCCTCGGCG
GCGACCAGCACCAGTCCAAGGACGACAAGCGCAAGTATTCATCTTCATGT
CCACTGATAACTT
BS14044.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11390-PA | 381 | PebIII-RA | 10..381 | 388..17 | 1860 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:41:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PebIII-RC | 836 | CG11390-RC | 333..713 | 398..17 | 1885 | 99.7 | Minus |
| PebIII-RB | 768 | CG11390-RB | 265..645 | 398..17 | 1885 | 99.7 | Minus |
| PebIII-RA | 586 | CG11390-RA | 83..463 | 398..17 | 1885 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:41:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24027024..24027395 | 388..17 | 1860 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 17:41:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 1589..1626 | 349..312 | 118 | 78.9 | Minus |
BS14044.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:09 Download gff for
BS14044.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11390-PA | 1..381 | 17..398 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:19 Download gff for
BS14044.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PebIII-RA | 83..466 | 13..398 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:15:53 Download gff for
BS14044.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PebIII-RA | 83..466 | 13..398 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:15:53 Download gff for
BS14044.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24027015..24027398 | 13..398 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:19 Download gff for
BS14044.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19914538..19914921 | 13..398 | 99 | | Minus |
BS14044.5prime Sequence
411 bp (411 high quality bases) assembled on 2006-10-13
> BS14044.5prime
GAAGTTATCAGTCGACATGAAGATGATACTTGCGCTTGTCGTCCTTGGAC
TGGTGCTGGTCGCCGCCGAGGATAAGTACACCACCAAGTACGACAACATC
GACGTCGACGAGATCCTGAAGTCGGACCGCCTCTTCGGAAACTACTTCAA
GTGCCTGGTGGACAACGGAAAGTGCACCCCGGAGGGCCGGGAGCTCAAGA
AGTCCCTGCCGGACGCCCTGAAGACGGAGTGCAGCAAGTGCAGCGAGAAG
CAGCGCCAGAACACCGACAAGGTCATTCGCTACATCATCGAAAACAAGCC
CGAGGAGTGGAAGCAGCTGCAGGCCAAGTACGATCCCGATGAGATCTACA
TCAAGCGCTACCGCGCCACCGCCGAGGCCTCGGGAATCAAGGTGTAAAAG
CTTTCTAGACC
BS14044.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11390-PA | 381 | PebIII-RA | 1..381 | 17..397 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PebIII-RC | 836 | CG11390-RC | 333..713 | 17..397 | 1905 | 100 | Plus |
| PebIII-RB | 768 | CG11390-RB | 265..645 | 17..397 | 1905 | 100 | Plus |
| PebIII-RA | 586 | CG11390-RA | 83..463 | 17..397 | 1905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:44:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24027015..24027395 | 17..397 | 1905 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 21:44:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 1589..1626 | 65..102 | 118 | 78.9 | Plus |
BS14044.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:09 Download gff for
BS14044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11390-PA | 1..381 | 17..397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:47 Download gff for
BS14044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PebIII-RA | 83..466 | 17..401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:45:26 Download gff for
BS14044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PebIII-RA | 83..466 | 17..401 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:45:26 Download gff for
BS14044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24027015..24027398 | 17..401 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:47 Download gff for
BS14044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19914538..19914921 | 17..401 | 99 | | Plus |
BS14044.complete Sequence
413 bp assembled on 2006-11-01
GenBank Submission: FJ637591
> BS14044.complete
GAAGTTATCAGTCGACATGAAGATGATACTTGCGCTTGTCGTCCTTGGAC
TGGTGCTGGTCGCCGCCGAGGATAAGTACACCACCAAGTACGACAACATC
GACGTCGACGAGATCCTGAAGTCGGACCGCCTCTTCGGAAACTACTTCAA
GTGCCTGGTGGACAACGGAAAGTGCACCCCGGAGGGCCGGGAGCTCAAGA
AGTCCCTGCCGGACGCCCTGAAGACGGAGTGCAGCAAGTGCAGCGAGAAG
CAGCGCCAGAACACCGACAAGGTCATTCGCTACATCATCGAAAACAAGCC
CGAGGAGTGGAAGCAGCTGCAGGCCAAGTACGATCCCGATGAGATCTACA
TCAAGCGCTACCGCGCCACCGCCGAGGCCTCGGGAATCAAGGTGTAAAAG
CTTTCTAGACCAT
BS14044.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PebIII-RC | 381 | CG11390-PC | 1..381 | 17..397 | 1905 | 100 | Plus |
| PebIII-RB | 381 | CG11390-PB | 1..381 | 17..397 | 1905 | 100 | Plus |
| PebIII-RA | 381 | CG11390-PA | 1..381 | 17..397 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:09:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PebIII-RC | 836 | CG11390-RC | 333..713 | 17..397 | 1905 | 100 | Plus |
| PebIII-RB | 768 | CG11390-RB | 265..645 | 17..397 | 1905 | 100 | Plus |
| PebIII-RA | 586 | CG11390-RA | 83..463 | 17..397 | 1905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:09:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24027015..24027395 | 17..397 | 1905 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 10:09:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 1589..1626 | 65..102 | 118 | 78.9 | Plus |
BS14044.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:19 Download gff for
BS14044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PebIII-RA | 1..381 | 17..397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:37 Download gff for
BS14044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PebIII-RA | 96..479 | 17..401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:05:31 Download gff for
BS14044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PebIII-RA | 83..461 | 17..395 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:19 Download gff for
BS14044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PebIII-RA | 96..479 | 17..401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:34 Download gff for
BS14044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PebIII-RA | 83..461 | 17..395 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:14:34 Download gff for
BS14044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24027015..24027393 | 17..395 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:05:31 Download gff for
BS14044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19914538..19914916 | 17..395 | 100 | | Plus |
BS14044.pep Sequence
Translation from 16 to 396
> BS14044.pep
MKMILALVVLGLVLVAAEDKYTTKYDNIDVDEILKSDRLFGNYFKCLVDN
GKCTPEGRELKKSLPDALKTECSKCSEKQRQNTDKVIRYIIENKPEEWKQ
LQAKYDPDEIYIKRYRATAEASGIKV*
BS14044.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PebIII-PC | 126 | CG11390-PC | 1..126 | 1..126 | 654 | 100 | Plus |
| PebIII-PB | 126 | CG11390-PB | 1..126 | 1..126 | 654 | 100 | Plus |
| PebIII-PA | 126 | CG11390-PA | 1..126 | 1..126 | 654 | 100 | Plus |
| Phk-3-PC | 121 | CG9358-PC | 1..114 | 1..111 | 334 | 57 | Plus |
| Phk-3-PB | 121 | CG9358-PB | 1..114 | 1..111 | 334 | 57 | Plus |
