Clone Sequence Records
BS14048.3prime Sequence
530 bp (488 high quality bases) assembled on 2006-10-13
> BS14048.3prime
ATGGTCTAGAAAGCTTTTACACTGATGCTTTCTCTACCAGCTTGGCCATC
ATCTTCTCCTCCTTGGCCTTTCGCTTGGCCTCCTTCTGCTTCTTCTTGTC
CTCCTTCTCTTTTTGCTCTAGCATTTCCTTAAAGCGTTCGTCGCGTGTAT
CCACCTTGAACCCGAAGTGTCGGCGCACCTCCTCTACCAGGCGTTCCTTG
CGTTGTATGGCTGCCGCTGCATCCGCCTCCCGCTTAGCGATCTTCGCGTG
CAGGTCCGCCTTCCACTGTGTCAACTTCTCCATCTTCTTCGCAATGTCCT
CTTCACGGGCATTTATCCTTGCCAGCTCCTCTGCCTTCTGCGCGCGGTTC
TTCTCCAGCATTTTCAGGAGTGTTTCTAGTTGCATAACCTGCCTGCTGTC
TTTCTCTCCGTGGGAATCGAAGCAAATCTTGGGATTCACATTGCTCTGGG
CCCCATACCGGCCGAATGCCTGTCTCTGGTACTTCTCGGTCAAATGAATC
CAGGAATGAGGTTCCTGGTATGGCAATTTG
BS14048.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7172-PA | 699 | CG7172-RA | 186..699 | 530..17 | 2545 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:41:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7172-RA | 840 | CG7172-RA | 251..764 | 530..17 | 2555 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:41:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21568135..21568648 | 17..530 | 2555 | 99.8 | Plus |
Blast to na_te.dros performed 2015-02-11 17:41:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GATE | 8507 | GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). | 108..147 | 50..12 | 107 | 77.5 | Minus |
| GATE | 8507 | GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). | 8343..8382 | 50..12 | 107 | 77.5 | Minus |
BS14048.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:11 Download gff for
BS14048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7172-PA | 186..699 | 17..530 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:20 Download gff for
BS14048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7172-RA | 251..773 | 6..530 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:16:30 Download gff for
BS14048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7172-RA | 251..773 | 6..530 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:16:30 Download gff for
BS14048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21568126..21568648 | 6..530 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:20 Download gff for
BS14048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21561226..21561748 | 6..530 | 99 | | Plus |
BS14048.5prime Sequence
546 bp (504 high quality bases) assembled on 2006-10-13
> BS14048.5prime
GAAGTTATCAGTCGACATGAATGTAGGCAAGATAAGCGTTGTCACCAGAC
TTCCTGCCCTCCGCTCGTGCGCCCAGTACTCGAGCGCTGCGAAAGCGGAA
CTGCCGGCTTCCTTGGTCGGCGACGTGGATGTGGAACCAACATATCCCCA
GACGGTGGACAGATCCGGCCTGCAACCACAACACAAAAATGTGCTCCTTA
ACAAATTGCCATACCAGGAACCTCACTCCTGGATTCATTTGACCGAGAAG
TACCAGAGACAGGCATTCGGCCGGTATGGGGCCCAGAGCAATGTGAATCC
CAAGATTTGCTTCGATTCCCACGGAGAGAAAGACAGCAGGCAGGTTATGC
AACTAGAAACACTCCTGAAAATGCTGGAGAAGAACCGCGCGCAGAAGGCA
GAGGAGCTGGCAAGGATAAATGCCCGTGAAGAGGACATTGCGAAGAAGAT
GGAGAAGTTGACACAGTGGAAGGCGGACCTGCACGCGAAGATCGCTAAAC
GGGAGGCGGATGCAGCGGCAGCCATACAACGCAAGGAACGCCTGGT
BS14048.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7172-PA | 699 | CG7172-RA | 1..530 | 17..546 | 2625 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:17:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7172-RA | 840 | CG7172-RA | 66..595 | 17..546 | 2635 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:17:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21568304..21568833 | 546..17 | 2635 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:17:10 has no hits.
BS14048.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:11 Download gff for
BS14048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7172-PA | 1..530 | 17..546 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:27:32 Download gff for
BS14048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7172-RA | 55..595 | 6..546 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:07 Download gff for
BS14048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7172-RA | 55..595 | 6..546 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:07 Download gff for
BS14048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21568304..21568844 | 6..546 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:27:32 Download gff for
BS14048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21561404..21561944 | 6..546 | 98 | | Minus |
BS14048.complete Sequence
731 bp assembled on 2006-11-01
GenBank Submission: FJ637593
> BS14048.complete
GAAGTTATCAGTCGACATGAATGTAGGCAAGATAAGCGTTGTCACCAGAC
TTCCTGCCCTCCGCTCGTGCGCCCAGTACTCGAGCGCTGCGAAAGCGGAA
CTGCCGGCTTCCTTGGTCGGCGACGTGGATGTGGAACCAACATATCCCCA
GACGGTGGACAGATCCGGCCTGCAACCACAACACAAAAATGTGCTCCTTA
ACAAATTGCCATACCAGGAACCTCACTCCTGGATTCATTTGACCGAGAAG
TACCAGAGACAGGCATTCGGCCGGTATGGGGCCCAGAGCAATGTGAATCC
CAAGATTTGCTTCGATTCCCACGGAGAGAAAGACAGCAGGCAGGTTATGC
AACTAGAAACACTCCTGAAAATGCTGGAGAAGAACCGCGCGCAGAAGGCA
GAGGAGCTGGCAAGGATAAATGCCCGTGAAGAGGACATTGCGAAGAAGAT
GGAGAAGTTGACACAGTGGAAGGCGGACCTGCACGCGAAGATCGCTAAGC
GGGAGGCGGATGCAGCGGCAGCCATACAACGCAAGGAACGCCTGGTAGAG
GAGGTGCGCCGACACTTCGGGTTCAAGGTGGATACACGCGACGAACGCTT
TAAGGAAATGCTAGAGCAAAAAGAGAAGGAGGACAAGAAGAAGCAGAAGG
AGGCCAAGCGAAAGGCCAAGGAGGAGAAGATGATGGCCAAGCTGGTAGAG
AAAGCATCAGTGTAAAAGCTTTCTAGACCAT
BS14048.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:48:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7172-RA | 699 | CG7172-PA | 1..699 | 17..715 | 3495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:48:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7172-RA | 840 | CG7172-RA | 66..764 | 17..715 | 3495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:48:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21568135..21568833 | 715..17 | 3495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:48:50 has no hits.
BS14048.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:20 Download gff for
BS14048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7172-RA | 1..699 | 17..715 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:39 Download gff for
BS14048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7172-RA | 69..787 | 6..726 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:18 Download gff for
BS14048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7172-RA | 66..762 | 17..713 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:21 Download gff for
BS14048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7172-RA | 51..769 | 6..726 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:09 Download gff for
BS14048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7172-RA | 66..762 | 17..713 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:09 Download gff for
BS14048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21568137..21568833 | 17..713 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:18 Download gff for
BS14048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21561237..21561933 | 17..713 | 100 | | Minus |
BS14048.pep Sequence
Translation from 16 to 714
> BS14048.pep
MNVGKISVVTRLPALRSCAQYSSAAKAELPASLVGDVDVEPTYPQTVDRS
GLQPQHKNVLLNKLPYQEPHSWIHLTEKYQRQAFGRYGAQSNVNPKICFD
SHGEKDSRQVMQLETLLKMLEKNRAQKAEELARINAREEDIAKKMEKLTQ
WKADLHAKIAKREADAAAAIQRKERLVEEVRRHFGFKVDTRDERFKEMLE
QKEKEDKKKQKEAKRKAKEEKMMAKLVEKASV*
BS14048.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7172-PA | 232 | CG7172-PA | 1..232 | 1..232 | 1177 | 100 | Plus |
