Clone Sequence Records
BS14049.5prime Sequence
499 bp (418 high quality bases) assembled on 2006-10-13
> BS14049.5prime
GAAGTTATCAGTCGACATGTCTATTACTCTAGATTTTAATGGTAAGAACT
TTGCCAAGGGTAAGAATTTAGACGTGCACTACTTGCCGGCCAAAATAGAC
GGCGATGGGGAAGCGAATGTAAAAAATTACTTCAACAACTACACACGTGA
AGCAACCGAATTCGGCACAGGAATCCTGACGAACGCCTTGCGCGGATTTC
CTTTAATGGGAGAGAAGTTGAAAGTGCCCGAAGGATACTGCGGATTAGTT
CTGCAAGAAACAGAGAAGCCCATCAGCGATACCTCCGACCGAAAGTTGCG
GCTAACTGGAGTATTTCAAGATTTTACTTACTGGAACTACGACAAAGTGC
CGTCCAATGGCGATCCCTACCGACAGGCCCTTCCTCTGCCGGATGTTGCT
CAAGCTCTCTCGCAGCCCATTAGCGAAGAGGATTTAGAGAAAAAAATCGC
TCGTAATAAGGAAAACGTCAAGGAAAGCACGTAGAAAGCTTTCCAAACC
BS14049.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:21:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30105-PA | 468 | CG30105-RA | 1..468 | 17..484 | 2290 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:02:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30105-RA | 642 | CG30105-RA | 93..560 | 17..484 | 2310 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:02:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17592028..17592417 | 406..17 | 1935 | 99.7 | Minus |
| 2R | 25286936 | 2R | 17591886..17591963 | 484..407 | 375 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 19:02:44 has no hits.
BS14049.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:11 Download gff for
BS14049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30105-PA | 1..468 | 17..484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:09:08 Download gff for
BS14049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30105-RA | 86..560 | 10..484 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:56:24 Download gff for
BS14049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30105-RA | 86..560 | 10..484 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:56:24 Download gff for
BS14049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17591886..17591963 | 407..484 | 98 | <- | Minus |
| 2R | 17592028..17592424 | 10..406 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:09:08 Download gff for
BS14049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13479391..13479468 | 407..484 | 98 | <- | Minus |
| arm_2R | 13479533..13479929 | 10..406 | 98 | | Minus |
BS14049.complete Sequence
500 bp assembled on 2010-07-02
GenBank Submission: KX806122
> BS14049.complete
GAAGTTATCAGTCGACATGTCTATTACTCTAGATTTTAATGGTAAGAACT
TTGCCAAGGGTAAGAATTTAGACGTGCACTACTTGCCGGCCAAAATAGAC
GGCGATGGGGAAGCGAATGTAAAAAATTACTTCAACAACTACACACGTGA
AGCAACCGAATTCGGCACAGGAATCCTGACGAACGCCTTGCGCGGATTTC
CTTTAATGGGAGAGAAGTTGAAAGTGCCCGAAGGATACTGCGGATTAGTT
CTGCAAGAAACAGAGAAGCCCATCAGCGATACCTCCGACCGAAAGTTGCG
GCTAACTGGAGTATTTCAAGATTTTACTTACTGGAACTACGACAAAGTGC
CGTCCAATGGCGATCCCTACCGACAGGCCCTTCCTCTGCCGGATGTTGCT
CAAGCTCTCTCGCAGCCCATTAGCGAAGAGGATTTAGAGAAAGAAATCGC
TCGTAATAAGGAAAACGTCAAGGAAAGCACGTAGAAGCTTTCTAGACCAT
BS14049.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:19:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30105-RA | 468 | CG30105-PA | 1..468 | 17..484 | 2325 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:19:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30105-RA | 642 | CG30105-RA | 93..560 | 17..484 | 2325 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:18:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17592028..17592417 | 406..17 | 1935 | 99.7 | Minus |
| 2R | 25286936 | 2R | 17591886..17591963 | 484..407 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:19:00 has no hits.
BS14049.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:24:36 Download gff for
BS14049.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30105-RA | 32..499 | 17..484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:27 Download gff for
BS14049.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30105-RA | 93..560 | 17..484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:26:36 Download gff for
BS14049.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30105-RA | 93..560 | 17..484 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:26:36 Download gff for
BS14049.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17591886..17591963 | 407..484 | 100 | <- | Minus |
| 2R | 17592028..17592417 | 17..406 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:27 Download gff for
BS14049.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13479391..13479468 | 407..484 | 100 | <- | Minus |
| arm_2R | 13479533..13479922 | 17..406 | 99 | | Minus |
BS14049.pep Sequence
Translation from 16 to 483
> BS14049.pep
MSITLDFNGKNFAKGKNLDVHYLPAKIDGDGEANVKNYFNNYTREATEFG
TGILTNALRGFPLMGEKLKVPEGYCGLVLQETEKPISDTSDRKLRLTGVF
QDFTYWNYDKVPSNGDPYRQALPLPDVAQALSQPISEEDLEKEIARNKEN
VKEST*
BS14049.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:34:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30105-PA | 155 | CG30105-PA | 1..155 | 1..155 | 817 | 100 | Plus |
