Clone BS14053 Report

Search the DGRC for BS14053

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:140
Well:53
Vector:pDNR-Dual
Associated Gene/Transcriptobsolete transcript model
Protein status:BS14053.pep: validated full length
Sequenced Size:16

Clone Sequence Records

BS14053.3prime Sequence

363 bp (363 high quality bases) assembled on 2006-10-13

> BS14053.3prime
ATGGTCTAGAAAGCTTTCAGTCAGTCCGGGCAGCTTTGGGAATGGTTTTC
ACTTGGGCCTGGGTTGGATTCTGTCTGAGGGCTTGGGATTGGGATTCGGC
TTGGGTTTGGCACTGGCACTGAACCTGCTGCGACCATAAATTCCATTGAT
TGTCGCGCCAGCGTTTTGTATGACAAGTTCGAAGTCTTGTATTGTCTGTC
GCCTCGTTTTGTCTTGCGTTTGTATGACTTCTGGTACCAGCCAGCCACAC
CCTGTCCCCTGGAGTCCCCGGAAACCCCCTGATGGCCTCTGAGAAGCCCC
CCTTTAACCCCCTGAAACTCCACCTCTGCTGCCACTCACCTGCCAGCATG
TCGACTGATAACT

BS14053.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG32399-PA 333 CG32399-RA 1..333 349..17 1665 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-01-30 18:01:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6344560..6344892 17..349 1665 100 Plus
Blast to na_te.dros performed on 2015-01-30 18:01:35 has no hits.

BS14053.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:13 Download gff for BS14053.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32399-PA 1..333 17..349 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:39 Download gff for BS14053.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6344560..6344899 17..357 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:39 Download gff for BS14053.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6344560..6344899 17..357 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:08 Download gff for BS14053.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6337660..6337999 17..357 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:08 Download gff for BS14053.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6337660..6337999 17..357 99   Plus

BS14053.complete Sequence

365 bp assembled on 2006-11-01

> BS14053.complete
GAAGTTATCAGTCGACATGCTGGCAGGTGAGTGGCAGCAGAGGTGGAGTT
TCAGGGGGTTAAAGGGGGGCTTCTCAGAGGCCATCAGGGGGTTTCCGGGG
ACTCCAGGGGACAGGGTGTGGCTGGCTGGTACCAGAAGTCATACAAACGC
AAGACAAAACGAGGCGACAGACAATACAAGACTTCGAACTTGTCATACAA
AACGCTGGCGCGACAATCAATGGAATTTATGGTCGCAGCAGGTTCAGTGC
CAGTGCCAAACCCAAGCCGAATCCCAATCCCAAGCCCTCAGACAGAATCC
AACCCAGGCCCAAGTGAAAACCATTCCCAAAGCTGCCCGGACTGACTGAA
AGCTTTCTAGACCAT

BS14053.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 14:41:26 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 14:41:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6344560..6344892 349..17 1665 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:41:25 has no hits.

BS14053.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:22 Download gff for BS14053.complete
Subject Subject Range Query Range Percent Splice Strand
CG34382-RC 1590..1615 260..285 92   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:22 Download gff for BS14053.complete
Subject Subject Range Query Range Percent Splice Strand
CG34382-RC 2145..2170 260..285 92   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:48 Download gff for BS14053.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6344561..6344892 17..348 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:48 Download gff for BS14053.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6344561..6344892 17..348 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:30 Download gff for BS14053.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6337661..6337992 17..348 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:30 Download gff for BS14053.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6337661..6337992 17..348 100   Minus

BS14053.5prime Sequence

363 bp (363 high quality bases) assembled on 2006-10-13

> BS14053.5prime
GAAGTTATCAGTCGACATGCTGGCAGGTGAGTGGCAGCAGAGGTGGAGTT
TCAGGGGGTTAAAGGGGGGCTTCTCAGAGGCCATCAGGGGGTTTCCGGGG
ACTCCAGGGGACAGGGTGTGGCTGGCTGGTACCAGAAGTCATACAAACGC
AAGACAAAACGAGGCGACAGACAATACAAGACTTCGAACTTGTCATACAA
AACGCTGGCGCGACAATCAATGGAATTTATGGTCGCAGCAGGTTCAGTGC
CAGTGCCAAACCCAAGCCGAATCCCAATCCCAAGCCCTCAGACAGAATCC
AACCCAGGCCCAAGTGAAAACCATTCCCAAAGCTGCCCGGACTGACTGAA
AGCTTTCTAGACC

BS14053.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG32399-PA 333 CG32399-RA 1..333 17..349 1665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-01-30 18:02:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:02:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6344560..6344892 349..17 1665 100 Minus
Blast to na_te.dros performed on 2015-01-30 18:02:11 has no hits.

BS14053.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:13 Download gff for BS14053.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32399-PA 1..333 17..349 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:44 Download gff for BS14053.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6344560..6344899 9..349 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:44 Download gff for BS14053.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6344560..6344899 9..349 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:14 Download gff for BS14053.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6337660..6337999 9..349 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:14 Download gff for BS14053.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6337660..6337999 9..349 99   Minus

BS14053.pep Sequence

Translation from 16 to 348

> BS14053.pep
MLAGEWQQRWSFRGLKGGFSEAIRGFPGTPGDRVWLAGTRSHTNARQNEA
TDNTRLRTCHTKRWRDNQWNLWSQQVQCQCQTQAESQSQALRQNPTQAQV
KTIPKAARTD*
Sequence BS14053.pep has no blast hits.