Clone BS14055 Report

Search the DGRC for BS14055

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:140
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptInvadolysin-RA
Protein status:BS14055.pep: full length peptide match
Sequenced Size:2084

Clone Sequence Records

BS14055.3prime Sequence

620 bp (550 high quality bases) assembled on 2006-10-13

> BS14055.3prime
ATGGTCTAGAAAGCTTCTAACTGAATCCCCATCGCAGGCCGAAAAGCAGC
AGTACAGCGGTGATTATGGCCACGGAACGTGATTTCTCACTGCCCGCTCC
ACAGGCGAGGTTGTCGCGCGGGTACTTATTGAGCGGATCGGGCTCCTCGC
CCGGACGACACTGCTTGCCCTGAGCAGCAAATTGTGCTCCGCACAGCTCG
TGGCACGGCGGGCACATGATCGCGCCCTTGTGCAGCCATCCATTGGCCGC
AATTCGAATAGAAAGCTTCTGCCCGGGAAAGGAGCACTTGTAGCTATAGT
TGCCCACCAGGATGTGCAGTCGCCCGTCGAAGCAATCGTACTTGTAGCAT
CCGCTGCCCCAATGCTGCCACTCACGCGTCTGGTGACAGGATCGCTCCTC
CCACATCGATTCGCTGTGATCAAAGCACTTTGCTCCCTCGCCATAGCTCT
CCAAGGCGAAGTTCTTTTCAGGCCTGGGATTATTCTCTGTAAATCGACAA
TGAGATCCGCGCACTATCACGTTCTTGCTGCGCCAGGTAAACTCCTGAAT
GTAAGGACAGTGATCGGCCAGCGAAACCGAGCCGCCGTAGAACCCCTCCT
CGCCGTCCTTCACATGATTT

BS14055.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3953-PA 2052 l(3)IX-14-RA 1449..2052 620..17 2995 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:25:19
Subject Length Description Subject Range Query Range Score Percent Strand
Invadolysin-RA 3610 CG3953-RA 2182..2785 620..17 3005 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:25:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10157852..10158309 474..17 2290 100 Minus
3R 32079331 3R 10157643..10157789 620..474 720 99.3 Minus
Blast to na_te.dros performed on 2015-02-11 04:25:17 has no hits.

BS14055.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:14 Download gff for BS14055.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3953-PA 1449..2052 17..620 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:08:37 Download gff for BS14055.3prime
Subject Subject Range Query Range Percent Splice Strand
Invadolysin-RA 2182..2788 12..620 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:12:02 Download gff for BS14055.3prime
Subject Subject Range Query Range Percent Splice Strand
Invadolysin-RA 2182..2788 12..620 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:12:02 Download gff for BS14055.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10157852..10158312 12..474 99   Minus
3R 10157643..10157788 475..620 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:08:37 Download gff for BS14055.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5983365..5983510 475..620 99 -> Minus
arm_3R 5983574..5984034 12..474 99   Minus

BS14055.5prime Sequence

545 bp (544 high quality bases) assembled on 2006-10-13

> BS14055.5prime
GAAGTTATCAGTCGACATGGCCAAAACGCCCCCGCTCCGCCCCCACGGTA
ACATGGCCAAATTCCTGGCAGCCCTCGGCATCTGCTCTTGGCTCCTCGTT
TCGGCCACCGCTCACAACTGCCAACACCAGCATCCAAAGGCCCACGAGGT
CGTCCATGGCGTGCGCATCCAACTGGCTGATAGCGAAGATGACTCCGCCG
GAGATCCAGCGAGGCATAGCGTCCGACGGCGCAGCGTTGCCGCCGAGCAG
CCACTGCGAATTCTGCTCGTCTACGACGAATCCGTCTACAGGCTGGAAGA
AGAGAAATTTAATTTGATAAATGACACCGTTCTCCCGGAAGCCGTGCAGT
TCTGGGAACAGGCCCTGATGGTGCGAGAGACCAAGGGCGTTATCCGACTC
AATAGGAAATGCGACAGCACGCAGGTGTACGTGAAAAACGGACACACCCA
CTGCATCGACCATTGCAAGGCGACGACGATGTGCGGCGAGGTTCAGGTGC
CCGATGCGCACTTGGATGTATGTCGGGTGTGCAATGCCACGGGTC

BS14055.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG3953-PA 2052 l(3)IX-14-RA 1..529 17..545 2645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:55:44
Subject Length Description Subject Range Query Range Score Percent Strand
Invadolysin-RA 3610 CG3953-RA 733..1262 16..545 2650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:55:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10154222..10154367 147..292 730 100 Plus
3R 32079331 3R 10145400..10145534 16..150 675 100 Plus
3R 32079331 3R 10155975..10156091 404..520 585 100 Plus
3R 32079331 3R 10155822..10155905 323..406 420 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:55:42 has no hits.

BS14055.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:15 Download gff for BS14055.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3953-PA 1..529 17..545 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:50:50 Download gff for BS14055.5prime
Subject Subject Range Query Range Percent Splice Strand
Invadolysin-RA 730..1262 9..545 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:16:20 Download gff for BS14055.5prime
Subject Subject Range Query Range Percent Splice Strand
Invadolysin-RA 730..1262 9..545 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:16:20 Download gff for BS14055.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10145397..10145532 9..148 97 -> Plus
3R 10154224..10154366 149..291 100 -> Plus
3R 10155712..10155742 292..322 100 -> Plus
3R 10155822..10155904 323..405 100 -> Plus
3R 10155977..10156088 406..517 100 -> Plus
3R 10156576..10156603 518..545 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:50:50 Download gff for BS14055.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5971119..5971254 9..148 97 -> Plus
arm_3R 5979946..5980088 149..291 100 -> Plus
arm_3R 5981434..5981464 292..322 100 -> Plus
arm_3R 5981544..5981626 323..405 100 -> Plus
arm_3R 5981699..5981810 406..517 100 -> Plus
arm_3R 5982298..5982325 518..545 100   Plus

BS14055.complete Sequence

2084 bp assembled on 2009-12-07

GenBank Submission: KX801504

> BS14055.complete
GAAGTTATCAGTCGACATGGCCAAAACGCCCCCGCTCCGCCCCCACGGTA
ACATGGCCAAATTCCTGGCAGCCCTCGGCATCTGCTCTTGGCTCCTCGTT
TCGGCCACCGCTCACAACTGCCAACACCAGCATCCAAAGGCCCACGAGGT
CGTCCATGGCGTGCGCATCCAACTGGCTGATAGCGAAGATGACTCCGCCG
GAGATCCAGCGAGGCATAGCGTCCGACGGCGCAGCGTTGCCGCCGAGCAG
CCACTGCGAATTCTGCTCGTCTACGACGAATCCGTCTACAGGCTGGAAGA
AGAGAAATTTAATTTGATAAATGACACCGTTCTCCCGGAAGCCGTGCAGT
TCTGGGAACAGGCCCTGATGGTGCGAGAGACCAAGGGCGTTATCCGACTC
AATAGGAAATGCGACAGCACGCAGGTGTACGTGAAAAACGGACACACCCA
CTGCATCGACCATTGCAAGGCGACGACGATGTGCGGCGAGGTTCAGGTGC
CCGATGCGCACTTGGATGTATGTCGGGTGTGCAATGCCACGGGTCAGAAT
TGTAGAATCGATAGTAACACACAGCCGGGCGAAGGAATTGAGAATGCGGA
CTTTGTGTTCTACGTGTCCGCCAGGCAGACGCAGCGTTGTTTCAAGGGTC
TAACCGTTGCCTATGCGGCCCATTGTCAACAGGAAGCGGCTCTGGATCGT
CCAATCGCCGGTCATGCGAATCTCTGTCCGGAGAGCATTAGCACAAAGCC
GCAGGAACTGCAGACACTGATCTCCACCGTAAAGCACGAGATTCTCCATG
CACTGGGATTCTCCGTGAGCTTGTACGCATTCTTTAGGGACGATGATGGA
AAACCCCGAACGCCCCGAAAATTAGACACTGGCAAGCCGTACCTGAATGA
AAAATTGCAGATCCATCAGTGGAGCAACGAGACCATTCGCAAGGTGGTGC
GAGAGAACTGGTCTGTGCGTGGTGGCCATGTTAACAAGGTAGTGGACATG
ATGGTCACGCCTCGCGTAATTGCCGAGGTGCGCGCCCACTTTAACTGCAA
TAAGTTGGAGGGCGCCGAGCTGGAGGATCAGGGTGGCGAAGGTACCGCCC
TGACCCACTGGGAAAAGCGCATCCTGGAGAATGAGGCCATGACTGGCACG
CACACACAGTCGCCGGTCTTCTCGCGCATCACCCTTGCATTGATGGAGGA
TTCCGGCTGGTATCGGGCCAACTACTCCATGGCAACGCCGCTGACTTGGG
GCAAGGGACTGGGATGTGCGTTTGCTATGCGTAGTTGCAAGGATTGGATA
CAGTACAACCATGCTAGGGGTCGCTCTATACATCCCTTCTGCTCGAAGGT
CAAGCAGGATCCCCTCCAAACCGAATGCACAGATGATCGCAACTCTGTGG
CGCTTTGCAATCTTATCCGCCATGAGTTTGAGCTGCCCAAAGGCTATCAG
AACTTCGACAGCCTAAATCATGTGAAGGACGGCGAGGAGGGGTTCTACGG
CGGCTCGGTTTCGCTGGCCGATCACTGTCCCTACATTCAGGAGTTTACCT
GGCGCAGCAAGAACGTGATAGTGCGCGGATCTCATTGTCGATTTACAGAG
AATAATCCCAGGCCTGAAAAGAACTTCGCCTTGGAGAGCTATGGCGAGGG
AGCAAAGTGCTTTGATCACAGCGAATCGATGTGGGAGGAGCGATCCTGTC
ACCAGACGCGTGAGTGGCAGCATTGGGGCAGCGGATGCTACAAGTACGAT
TGCTTCGACGGGCGACTGCACATCCTGGTGGGCAACTATAGCTACAAGTG
CTCCTTTCCCGGGCAGAAGCTTTCTATTCGAATTGCGGCCAATGGATGGC
TGCACAAGGGCGCGATCATGTGCCCGCCGTGCCACGAGCTGTGCGGAGCA
CAATTTGCTGCTCAGGGCAAGCAGTGTCGTCCGGGCGAGGAGCCCGATCC
GCTCAATAAGTACCCGCGCGACAACCTCGCCTGTGGAGCGGGCAGTGAGA
AATCACGTTCCGTGGCCATAATCACCGCTGTACTGCTGCTTTTCGGCCTG
CGATGGGGATTCAGTTAGAAGCTTTCTAGACCAT

BS14055.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:12:30
Subject Length Description Subject Range Query Range Score Percent Strand
Invadolysin-RA 2052 CG3953-PA 1..2052 17..2068 10260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:12:31
Subject Length Description Subject Range Query Range Score Percent Strand
Invadolysin-RA 3610 CG3953-RA 733..2785 16..2068 10265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:12:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10157852..10158309 1611..2068 2290 100 Plus
3R 32079331 3R 10157017..10157431 904..1318 2075 100 Plus
3R 32079331 3R 10156576..10156961 518..903 1930 100 Plus
3R 32079331 3R 10157494..10157789 1316..1611 1480 100 Plus
3R 32079331 3R 10154222..10154367 147..292 730 100 Plus
3R 32079331 3R 10145400..10145534 16..150 675 100 Plus
3R 32079331 3R 10155975..10156091 404..520 585 100 Plus
3R 32079331 3R 10155822..10155905 323..406 420 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:12:29 has no hits.

BS14055.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:45 Download gff for BS14055.complete
Subject Subject Range Query Range Percent Splice Strand
Invadolysin-RA 703..2754 17..2068 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:13:38 Download gff for BS14055.complete
Subject Subject Range Query Range Percent Splice Strand
Invadolysin-RA 734..2785 17..2068 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:09:19 Download gff for BS14055.complete
Subject Subject Range Query Range Percent Splice Strand
Invadolysin-RA 703..2754 17..2068 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:24:10 Download gff for BS14055.complete
Subject Subject Range Query Range Percent Splice Strand
Invadolysin-RA 734..2785 17..2068 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:24:10 Download gff for BS14055.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10145401..10145532 17..148 100 -> Plus
3R 10154224..10154366 149..291 100 -> Plus
3R 10155712..10155742 292..322 100 -> Plus
3R 10155822..10155904 323..405 100 -> Plus
3R 10155977..10156088 406..517 100 -> Plus
3R 10156576..10156961 518..903 100 -> Plus
3R 10157017..10157430 904..1317 100 -> Plus
3R 10157496..10157788 1318..1610 100 -> Plus
3R 10157852..10158309 1611..2068 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:13:38 Download gff for BS14055.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5971123..5971254 17..148 100 -> Plus
arm_3R 5979946..5980088 149..291 100 -> Plus
arm_3R 5981434..5981464 292..322 100 -> Plus
arm_3R 5981544..5981626 323..405 100 -> Plus
arm_3R 5981699..5981810 406..517 100 -> Plus
arm_3R 5982298..5982683 518..903 100 -> Plus
arm_3R 5982739..5983152 904..1317 100 -> Plus
arm_3R 5983218..5983510 1318..1610 100 -> Plus
arm_3R 5983574..5984031 1611..2068 100   Plus

BS14055.pep Sequence

Translation from 16 to 2067

> BS14055.pep
MAKTPPLRPHGNMAKFLAALGICSWLLVSATAHNCQHQHPKAHEVVHGVR
IQLADSEDDSAGDPARHSVRRRSVAAEQPLRILLVYDESVYRLEEEKFNL
INDTVLPEAVQFWEQALMVRETKGVIRLNRKCDSTQVYVKNGHTHCIDHC
KATTMCGEVQVPDAHLDVCRVCNATGQNCRIDSNTQPGEGIENADFVFYV
SARQTQRCFKGLTVAYAAHCQQEAALDRPIAGHANLCPESISTKPQELQT
LISTVKHEILHALGFSVSLYAFFRDDDGKPRTPRKLDTGKPYLNEKLQIH
QWSNETIRKVVRENWSVRGGHVNKVVDMMVTPRVIAEVRAHFNCNKLEGA
ELEDQGGEGTALTHWEKRILENEAMTGTHTQSPVFSRITLALMEDSGWYR
ANYSMATPLTWGKGLGCAFAMRSCKDWIQYNHARGRSIHPFCSKVKQDPL
QTECTDDRNSVALCNLIRHEFELPKGYQNFDSLNHVKDGEEGFYGGSVSL
ADHCPYIQEFTWRSKNVIVRGSHCRFTENNPRPEKNFALESYGEGAKCFD
HSESMWEERSCHQTREWQHWGSGCYKYDCFDGRLHILVGNYSYKCSFPGQ
KLSIRIAANGWLHKGAIMCPPCHELCGAQFAAQGKQCRPGEEPDPLNKYP
RDNLACGAGSEKSRSVAIITAVLLLFGLRWGFS*

BS14055.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
Invadolysin-PA 683 CG3953-PA 1..683 1..683 3736 100 Plus