Clone Sequence Records
BS14059.3prime Sequence
647 bp (578 high quality bases) assembled on 2006-10-13
> BS14059.3prime
ATGGTCTAGAAAGCTTCTACATGAATGTGATCTTCGTGCGTCCCATGTTG
ACCTGCCAGACATTGAGCTCCTCGTAATCATCGATGCATTTGTCCACCTG
GTCGGGCTTGAATCCTTTGGTTGTGCAGCGGTCCATGATGTCGGAGATTT
TGACTGCCTTTCCAGAGCCAGCCAGTTCACGAACGATGGCAAAGATTCGA
TCCGAAGTGTTGGGTACGTGTCCCTTCTGGTGCTCGTGGATTTGGTTGAG
CGAGTCCTTAGACATCTCCAGCAGACGCAGTGCTTCAGCCACATCATCTT
TCTCCACGCTATCGGAAAGACGCAACCTAGCCAAAGCGGTGGACAACCGC
AGGATTCCCAACAAGTTACGTGCCGAGGTGAAGGTCATGTCCTTCTGGTT
GCGCGCCTCCCGACGCAACTCCACATAAGCTCCCACAATGTAGTCGGTGA
GCTCATCCGGAATAGTTGGATTCTTGCGCTTGCACAGGTTAATGTAGCGC
CGCATAAGATTCATGTCCAGAGCCTTTACTCGAGTGGGTGGCTGTTTGCT
GTGGCTATGCACATAGGTTATGTGCTTGGCCAAGCGCAAATCATTATCGC
GATCCGGTTTATCCTGAATGAGCCACAGCAGATCGAAACGTGAGAGC
BS14059.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:22:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4978-PA | 2163 | Mcm7-RA | 1533..2163 | 647..17 | 3130 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:02:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mcm7-RA | 2451 | CG4978-RA | 1686..2317 | 647..16 | 3145 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:02:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8893483..8893911 | 647..219 | 2130 | 99.8 | Minus |
3L | 28110227 | 3L | 8893974..8894176 | 218..16 | 1015 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 19:02:53 has no hits.
BS14059.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:16 Download gff for
BS14059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4978-PA | 1533..2163 | 17..647 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:09:11 Download gff for
BS14059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mcm7-RA | 1686..2317 | 16..647 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:56:55 Download gff for
BS14059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mcm7-RA | 1686..2317 | 16..647 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:56:55 Download gff for
BS14059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8893483..8893911 | 219..647 | 99 | -> | Minus |
3L | 8893974..8894176 | 16..218 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:09:11 Download gff for
BS14059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8886583..8887011 | 219..647 | 99 | -> | Minus |
arm_3L | 8887074..8887276 | 16..218 | 100 | | Minus |
BS14059.5prime Sequence
638 bp (636 high quality bases) assembled on 2006-10-13
> BS14059.5prime
GAAGTTATCAGTCGACATGGCTCGACGAGATTATGCCCAAGACCGAGAAT
CTATCAAGACCTTCCTTTCGGAATTCTGCAAGTGCGACGATGATGGCAAA
AAGGAGTTCGTCTACGGATCTCAGCTGGTGAAGTTGGCCCATCGAGAGCA
AGTTCTGATCACCATCGATCTGGATGATCTGGCGGAATTCAATGAAAGTC
TCGCGGAGGCGGTGGTCGACAATTGTCGGCGATACACGTCCATATTCAGC
GATGTAATTGCTGAACTCCTGCCCAGCTACAAACAGCAGGAGGTACACGC
CAAGGATGCTCTGGATGTGTACATTGAGCACCGCCTGATGATGGAGTCCC
GCACCAGGAATCCCATGGAACAGCGCGATGAGCGGAACTCTTTCCCCTCG
GAGCTGATGAAGCGATTCGAGGTGGGCTTCAAACCACTGTCCACAGAGAA
GGCGCACTCTATTCGCGAGGTTAAGGCCCAGCACATTGGTAAACTGGTCA
CCGTTCGCGGCATTGTTACACGCTGCACGGAGGTTAAGCCCATGATGGTG
GTTGCCACCTACACATGCGATCGCTGTGGCTCGGAGACGTATCAGCCAGT
TAACTCGCTATCCTTCACGCCCGTGCACGATTGCCCGT
BS14059.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:22:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4978-PA | 2163 | Mcm7-RA | 1..622 | 17..638 | 3110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:56:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mcm7-RA | 2451 | CG4978-RA | 154..775 | 17..638 | 3110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:56:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8891842..8892213 | 46..417 | 1860 | 100 | Plus |
3L | 28110227 | 3L | 8892285..8892505 | 418..638 | 1105 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:56:10 has no hits.
BS14059.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:17 Download gff for
BS14059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4978-PA | 1..622 | 17..638 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:50:52 Download gff for
BS14059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mcm7-RA | 154..775 | 17..638 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:16:35 Download gff for
BS14059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mcm7-RA | 154..775 | 17..638 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:16:35 Download gff for
BS14059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8892285..8892505 | 418..638 | 100 | | Plus |
3L | 8891749..8891779 | 17..47 | 100 | -> | Plus |
3L | 8891844..8892213 | 48..417 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:50:52 Download gff for
BS14059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8884849..8884879 | 17..47 | 100 | -> | Plus |
arm_3L | 8884944..8885313 | 48..417 | 100 | -> | Plus |
arm_3L | 8885385..8885605 | 418..638 | 100 | | Plus |
BS14059.complete Sequence
2195 bp assembled on 2008-08-15
GenBank Submission: KX803330
> BS14059.complete
GAAGTTATCAGTCGACATGGCTCGACGAGATTATGCCCAAGACCGAGAAT
CTATCAAGACCTTCCTTTCGGAATTCTGCAAGTGCGACGATGATGGCAAA
AAGGAGTTCGTCTACGGATCTCAGCTGGTGAAGTTGGCCCATCGAGAGCA
AGTTCTGATCACCATCGATCTGGATGATCTGGCGGAATTCAATGAAAGTC
TCGCGGAGGCGGTGGTCGACAATTGTCGGCGATACACGTCCATATTCAGC
GATGTAATTGCTGAACTCCTGCCCAGCTACAAACAGCAGGAGGTACACGC
CAAGGATGCTCTGGATGTGTACATTGAGCACCGCCTGATGATGGAGTCCC
GCACCAGGAATCCCATGGAACAGCGCGATGAGCGGAACTCTTTCCCCTCG
GAGCTGATGAAGCGATTCGAGGTGGGCTTCAAACCACTGTCCACAGAGAA
GGCGCACTCTATTCGCGAGGTTAAGGCCCAGCACATTGGTAAACTGGTCA
CCGTTCGCGGCATTGTTACACGCTGCACGGAGGTTAAGCCCATGATGGTG
GTTGCCACCTACACATGCGATCGCTGTGGCTCGGAGACGTATCAGCCAGT
TAACTCGCTATCCTTCACGCCCGTGCACGATTGCCCGTCGGATGATTGCC
GAGTGAACAAAGCGGGAGGTCGTCTGTATCTGCAGACCCGCGGCTCCAAG
TTCGTCAAGTTCCAGGAGGTCAAAATGCAGGAGCACAGCGACCAGGTGCC
CGTGGGCCACATTCCGCGCAGCATGACCATCATGTGCAGGGGTGAGGTCA
CTCGAATGGCCCAGCCTGGGGATCACATTGTGGTCTCTGGAGTGTTCTTG
CCACTAATGCGCACAGGTTTCGCTCAGATGATTCAGGGTTTGCTCTCGGA
GACATTCCTTCAAGCTCACCGCATCATCTGTATCAACAAGAACGACGAGA
TTTCGGACAAGGATGCCGAGCTGACTCCAGAAGAGCTGGAGGAATTGGCC
CAGGATGACTTCTACGAGCGCTTGGCCACCAGCTTGGCACCCGAAATCTA
TGGCCATTTGGATGTTAAGAAAGCGCTGCTCTTGCTGTTGGTCGGAGGAG
TTGACAAGCGGCCCGATGGCATGAAGATTCGTGGCAACATTAACATCTGC
CTGATGGGAGATCCCGGTGTGGCCAAGTCGCAGCTGCTGGGCTACATTAG
CCGATTGGCCGTGCGATCGCAGTACACCACAGGGCGAGGTTCTTCGGGGG
TGGGTCTTACCGCTGCGGTCATGAAGGACCCTCTCACAGGCGAGATGACA
TTGGAAGGAGGAGCTCTTGTGCTGGCTGATCAGGGAGTCTGCTGCATTGA
TGAGTTCGACAAGATGGCGGATCAGGATCGTACAGCCATTCACGAGGTGA
TGGAACAGCAGACCATTTCGATAGCCAAAGCAGGCATCATGACGACCCTA
AACGCTCGCGTTTCCATCCTGGCCGCTGCTAATCCCGCTTTTGGACGCTA
CAATCCTCGTCGTACCGTGGAGCAGAACATTCAGCTTCCCGCAGCCCTGC
TCTCACGTTTCGATCTGCTGTGGCTCATCCAGGATAAACCGGATCGCGAT
AATGATTTGCGCTTGGCCAAGCACATAACCTATGTGCATAGCCACAGCAA
ACAGCCACCCACTCGAGTAAAGGCTCTGGACATGAATCTTATGCGGCGCT
ACATTAACCTGTGCAAGCGCAAGAATCCAACTATTCCGGATGAGCTCACC
GACTACATTGTGGGAGCTTATGTGGAGTTGCGTCGGGAGGCGCGCAACCA
GAAGGACATGACCTTCACCTCGGCACGTAACTTGTTGGGAATCCTGCGGT
TGTCCACCGCTTTGGCTAGGTTGCGTCTTTCCGATAGCGTGGAGAAAGAT
GATGTGGCTGAAGCACTGCGTCTGCTGGAGATGTCTAAGGACTCGCTCAA
CCAAATCCACGAGCACCAGAAGGGACACGTACCCAACACTTCGGATCGAA
TCTTTGCCATCGTTCGTGAACTGGCTGGCTCTGGAAAGGCAGTCAAAATC
TCCGACATCATGGACCGCTGCACAACCAAAGGATTCAAGCCCGACCAGGT
GGACAAATGCATCGATGATTACGAGGAGCTCAATGTCTGGCAGGTCAACA
TGGGACGCACGAAGATCACATTCATGTAGAAGCTTTCTAGACCAT
BS14059.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:59:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mcm7-RA | 2163 | CG4978-PA | 1..2163 | 17..2179 | 10815 | 100 | Plus |
Mcm2-RA | 2664 | CG7538-PA | 1662..1787 | 1297..1422 | 240 | 79.4 | Plus |
Mcm5-RA | 2202 | CG4082-PA | 1321..1454 | 1346..1479 | 235 | 78.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:59:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mcm7-RA | 2451 | CG4978-RA | 154..2317 | 17..2180 | 10820 | 100 | Plus |
Mcm2-RA | 2898 | CG7538-RA | 1793..1918 | 1297..1422 | 240 | 79.4 | Plus |
Mcm5-RA | 2452 | CG4082-RA | 1462..1595 | 1346..1479 | 235 | 78.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:59:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8892854..8893911 | 920..1977 | 5290 | 100 | Plus |
3L | 28110227 | 3L | 8892285..8892786 | 418..919 | 2510 | 100 | Plus |
3L | 28110227 | 3L | 8891842..8892213 | 46..417 | 1860 | 100 | Plus |
3L | 28110227 | 3L | 8893974..8894176 | 1978..2180 | 1015 | 100 | Plus |
3R | 32079331 | 3R | 8266762..8266887 | 1297..1422 | 240 | 79.4 | Plus |
3R | 32079331 | 3R | 10790097..10790230 | 1346..1479 | 235 | 78.4 | Plus |
X | 23542271 | X | 5325179..5325265 | 1322..1408 | 210 | 82.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:59:39 has no hits.
BS14059.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:20:58 Download gff for
BS14059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mcm7-RA | 140..2303 | 17..2180 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:39:32 Download gff for
BS14059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mcm7-RA | 154..2316 | 17..2179 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:16:20 Download gff for
BS14059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mcm7-RA | 140..2302 | 17..2179 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:49 Download gff for
BS14059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mcm7-RA | 154..2316 | 17..2179 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:49 Download gff for
BS14059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8891749..8891779 | 17..47 | 100 | -> | Plus |
3L | 8891844..8892213 | 48..417 | 100 | -> | Plus |
3L | 8892285..8892786 | 418..919 | 100 | -> | Plus |
3L | 8892854..8893911 | 920..1977 | 100 | -> | Plus |
3L | 8893974..8894175 | 1978..2179 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:39:32 Download gff for
BS14059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8887074..8887275 | 1978..2179 | 100 | | Plus |
arm_3L | 8884849..8884879 | 17..47 | 100 | -> | Plus |
arm_3L | 8884944..8885313 | 48..417 | 100 | -> | Plus |
arm_3L | 8885385..8885886 | 418..919 | 100 | -> | Plus |
arm_3L | 8885954..8887011 | 920..1977 | 100 | -> | Plus |
BS14059.pep Sequence
Translation from 16 to 2178
> BS14059.pep
MARRDYAQDRESIKTFLSEFCKCDDDGKKEFVYGSQLVKLAHREQVLITI
DLDDLAEFNESLAEAVVDNCRRYTSIFSDVIAELLPSYKQQEVHAKDALD
VYIEHRLMMESRTRNPMEQRDERNSFPSELMKRFEVGFKPLSTEKAHSIR
EVKAQHIGKLVTVRGIVTRCTEVKPMMVVATYTCDRCGSETYQPVNSLSF
TPVHDCPSDDCRVNKAGGRLYLQTRGSKFVKFQEVKMQEHSDQVPVGHIP
RSMTIMCRGEVTRMAQPGDHIVVSGVFLPLMRTGFAQMIQGLLSETFLQA
HRIICINKNDEISDKDAELTPEELEELAQDDFYERLATSLAPEIYGHLDV
KKALLLLLVGGVDKRPDGMKIRGNINICLMGDPGVAKSQLLGYISRLAVR
SQYTTGRGSSGVGLTAAVMKDPLTGEMTLEGGALVLADQGVCCIDEFDKM
ADQDRTAIHEVMEQQTISIAKAGIMTTLNARVSILAAANPAFGRYNPRRT
VEQNIQLPAALLSRFDLLWLIQDKPDRDNDLRLAKHITYVHSHSKQPPTR
VKALDMNLMRRYINLCKRKNPTIPDELTDYIVGAYVELRREARNQKDMTF
TSARNLLGILRLSTALARLRLSDSVEKDDVAEALRLLEMSKDSLNQIHEH
QKGHVPNTSDRIFAIVRELAGSGKAVKISDIMDRCTTKGFKPDQVDKCID
DYEELNVWQVNMGRTKITFM*
BS14059.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:38:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mcm7-PA | 720 | CG4978-PA | 1..720 | 1..720 | 3705 | 100 | Plus |
dpa-PB | 866 | CG1616-PB | 252..766 | 126..636 | 854 | 38.6 | Plus |
dpa-PA | 866 | CG1616-PA | 252..766 | 126..636 | 854 | 38.6 | Plus |
Mcm3-PB | 818 | CG4206-PB | 97..645 | 136..640 | 818 | 37.8 | Plus |
Mcm5-PA | 733 | CG4082-PA | 35..646 | 10..640 | 817 | 33 | Plus |