Clone BS14059 Report

Search the DGRC for BS14059

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:140
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptMcm7-RA
Protein status:BS14059.pep: full length peptide match
Sequenced Size:2195

Clone Sequence Records

BS14059.3prime Sequence

647 bp (578 high quality bases) assembled on 2006-10-13

> BS14059.3prime
ATGGTCTAGAAAGCTTCTACATGAATGTGATCTTCGTGCGTCCCATGTTG
ACCTGCCAGACATTGAGCTCCTCGTAATCATCGATGCATTTGTCCACCTG
GTCGGGCTTGAATCCTTTGGTTGTGCAGCGGTCCATGATGTCGGAGATTT
TGACTGCCTTTCCAGAGCCAGCCAGTTCACGAACGATGGCAAAGATTCGA
TCCGAAGTGTTGGGTACGTGTCCCTTCTGGTGCTCGTGGATTTGGTTGAG
CGAGTCCTTAGACATCTCCAGCAGACGCAGTGCTTCAGCCACATCATCTT
TCTCCACGCTATCGGAAAGACGCAACCTAGCCAAAGCGGTGGACAACCGC
AGGATTCCCAACAAGTTACGTGCCGAGGTGAAGGTCATGTCCTTCTGGTT
GCGCGCCTCCCGACGCAACTCCACATAAGCTCCCACAATGTAGTCGGTGA
GCTCATCCGGAATAGTTGGATTCTTGCGCTTGCACAGGTTAATGTAGCGC
CGCATAAGATTCATGTCCAGAGCCTTTACTCGAGTGGGTGGCTGTTTGCT
GTGGCTATGCACATAGGTTATGTGCTTGGCCAAGCGCAAATCATTATCGC
GATCCGGTTTATCCTGAATGAGCCACAGCAGATCGAAACGTGAGAGC

BS14059.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:22:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG4978-PA 2163 Mcm7-RA 1533..2163 647..17 3130 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:02:54
Subject Length Description Subject Range Query Range Score Percent Strand
Mcm7-RA 2451 CG4978-RA 1686..2317 647..16 3145 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:02:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8893483..8893911 647..219 2130 99.8 Minus
3L 28110227 3L 8893974..8894176 218..16 1015 100 Minus
Blast to na_te.dros performed on 2015-02-11 19:02:53 has no hits.

BS14059.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:16 Download gff for BS14059.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4978-PA 1533..2163 17..647 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:09:11 Download gff for BS14059.3prime
Subject Subject Range Query Range Percent Splice Strand
Mcm7-RA 1686..2317 16..647 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:56:55 Download gff for BS14059.3prime
Subject Subject Range Query Range Percent Splice Strand
Mcm7-RA 1686..2317 16..647 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:56:55 Download gff for BS14059.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8893483..8893911 219..647 99 -> Minus
3L 8893974..8894176 16..218 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:09:11 Download gff for BS14059.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8886583..8887011 219..647 99 -> Minus
arm_3L 8887074..8887276 16..218 100   Minus

BS14059.5prime Sequence

638 bp (636 high quality bases) assembled on 2006-10-13

> BS14059.5prime
GAAGTTATCAGTCGACATGGCTCGACGAGATTATGCCCAAGACCGAGAAT
CTATCAAGACCTTCCTTTCGGAATTCTGCAAGTGCGACGATGATGGCAAA
AAGGAGTTCGTCTACGGATCTCAGCTGGTGAAGTTGGCCCATCGAGAGCA
AGTTCTGATCACCATCGATCTGGATGATCTGGCGGAATTCAATGAAAGTC
TCGCGGAGGCGGTGGTCGACAATTGTCGGCGATACACGTCCATATTCAGC
GATGTAATTGCTGAACTCCTGCCCAGCTACAAACAGCAGGAGGTACACGC
CAAGGATGCTCTGGATGTGTACATTGAGCACCGCCTGATGATGGAGTCCC
GCACCAGGAATCCCATGGAACAGCGCGATGAGCGGAACTCTTTCCCCTCG
GAGCTGATGAAGCGATTCGAGGTGGGCTTCAAACCACTGTCCACAGAGAA
GGCGCACTCTATTCGCGAGGTTAAGGCCCAGCACATTGGTAAACTGGTCA
CCGTTCGCGGCATTGTTACACGCTGCACGGAGGTTAAGCCCATGATGGTG
GTTGCCACCTACACATGCGATCGCTGTGGCTCGGAGACGTATCAGCCAGT
TAACTCGCTATCCTTCACGCCCGTGCACGATTGCCCGT

BS14059.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:22:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG4978-PA 2163 Mcm7-RA 1..622 17..638 3110 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:56:12
Subject Length Description Subject Range Query Range Score Percent Strand
Mcm7-RA 2451 CG4978-RA 154..775 17..638 3110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:56:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8891842..8892213 46..417 1860 100 Plus
3L 28110227 3L 8892285..8892505 418..638 1105 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:56:10 has no hits.

BS14059.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:17 Download gff for BS14059.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4978-PA 1..622 17..638 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:50:52 Download gff for BS14059.5prime
Subject Subject Range Query Range Percent Splice Strand
Mcm7-RA 154..775 17..638 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:16:35 Download gff for BS14059.5prime
Subject Subject Range Query Range Percent Splice Strand
Mcm7-RA 154..775 17..638 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:16:35 Download gff for BS14059.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8892285..8892505 418..638 100   Plus
3L 8891749..8891779 17..47 100 -> Plus
3L 8891844..8892213 48..417 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:50:52 Download gff for BS14059.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8884849..8884879 17..47 100 -> Plus
arm_3L 8884944..8885313 48..417 100 -> Plus
arm_3L 8885385..8885605 418..638 100   Plus

BS14059.complete Sequence

2195 bp assembled on 2008-08-15

GenBank Submission: KX803330

> BS14059.complete
GAAGTTATCAGTCGACATGGCTCGACGAGATTATGCCCAAGACCGAGAAT
CTATCAAGACCTTCCTTTCGGAATTCTGCAAGTGCGACGATGATGGCAAA
AAGGAGTTCGTCTACGGATCTCAGCTGGTGAAGTTGGCCCATCGAGAGCA
AGTTCTGATCACCATCGATCTGGATGATCTGGCGGAATTCAATGAAAGTC
TCGCGGAGGCGGTGGTCGACAATTGTCGGCGATACACGTCCATATTCAGC
GATGTAATTGCTGAACTCCTGCCCAGCTACAAACAGCAGGAGGTACACGC
CAAGGATGCTCTGGATGTGTACATTGAGCACCGCCTGATGATGGAGTCCC
GCACCAGGAATCCCATGGAACAGCGCGATGAGCGGAACTCTTTCCCCTCG
GAGCTGATGAAGCGATTCGAGGTGGGCTTCAAACCACTGTCCACAGAGAA
GGCGCACTCTATTCGCGAGGTTAAGGCCCAGCACATTGGTAAACTGGTCA
CCGTTCGCGGCATTGTTACACGCTGCACGGAGGTTAAGCCCATGATGGTG
GTTGCCACCTACACATGCGATCGCTGTGGCTCGGAGACGTATCAGCCAGT
TAACTCGCTATCCTTCACGCCCGTGCACGATTGCCCGTCGGATGATTGCC
GAGTGAACAAAGCGGGAGGTCGTCTGTATCTGCAGACCCGCGGCTCCAAG
TTCGTCAAGTTCCAGGAGGTCAAAATGCAGGAGCACAGCGACCAGGTGCC
CGTGGGCCACATTCCGCGCAGCATGACCATCATGTGCAGGGGTGAGGTCA
CTCGAATGGCCCAGCCTGGGGATCACATTGTGGTCTCTGGAGTGTTCTTG
CCACTAATGCGCACAGGTTTCGCTCAGATGATTCAGGGTTTGCTCTCGGA
GACATTCCTTCAAGCTCACCGCATCATCTGTATCAACAAGAACGACGAGA
TTTCGGACAAGGATGCCGAGCTGACTCCAGAAGAGCTGGAGGAATTGGCC
CAGGATGACTTCTACGAGCGCTTGGCCACCAGCTTGGCACCCGAAATCTA
TGGCCATTTGGATGTTAAGAAAGCGCTGCTCTTGCTGTTGGTCGGAGGAG
TTGACAAGCGGCCCGATGGCATGAAGATTCGTGGCAACATTAACATCTGC
CTGATGGGAGATCCCGGTGTGGCCAAGTCGCAGCTGCTGGGCTACATTAG
CCGATTGGCCGTGCGATCGCAGTACACCACAGGGCGAGGTTCTTCGGGGG
TGGGTCTTACCGCTGCGGTCATGAAGGACCCTCTCACAGGCGAGATGACA
TTGGAAGGAGGAGCTCTTGTGCTGGCTGATCAGGGAGTCTGCTGCATTGA
TGAGTTCGACAAGATGGCGGATCAGGATCGTACAGCCATTCACGAGGTGA
TGGAACAGCAGACCATTTCGATAGCCAAAGCAGGCATCATGACGACCCTA
AACGCTCGCGTTTCCATCCTGGCCGCTGCTAATCCCGCTTTTGGACGCTA
CAATCCTCGTCGTACCGTGGAGCAGAACATTCAGCTTCCCGCAGCCCTGC
TCTCACGTTTCGATCTGCTGTGGCTCATCCAGGATAAACCGGATCGCGAT
AATGATTTGCGCTTGGCCAAGCACATAACCTATGTGCATAGCCACAGCAA
ACAGCCACCCACTCGAGTAAAGGCTCTGGACATGAATCTTATGCGGCGCT
ACATTAACCTGTGCAAGCGCAAGAATCCAACTATTCCGGATGAGCTCACC
GACTACATTGTGGGAGCTTATGTGGAGTTGCGTCGGGAGGCGCGCAACCA
GAAGGACATGACCTTCACCTCGGCACGTAACTTGTTGGGAATCCTGCGGT
TGTCCACCGCTTTGGCTAGGTTGCGTCTTTCCGATAGCGTGGAGAAAGAT
GATGTGGCTGAAGCACTGCGTCTGCTGGAGATGTCTAAGGACTCGCTCAA
CCAAATCCACGAGCACCAGAAGGGACACGTACCCAACACTTCGGATCGAA
TCTTTGCCATCGTTCGTGAACTGGCTGGCTCTGGAAAGGCAGTCAAAATC
TCCGACATCATGGACCGCTGCACAACCAAAGGATTCAAGCCCGACCAGGT
GGACAAATGCATCGATGATTACGAGGAGCTCAATGTCTGGCAGGTCAACA
TGGGACGCACGAAGATCACATTCATGTAGAAGCTTTCTAGACCAT

BS14059.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
Mcm7-RA 2163 CG4978-PA 1..2163 17..2179 10815 100 Plus
Mcm2-RA 2664 CG7538-PA 1662..1787 1297..1422 240 79.4 Plus
Mcm5-RA 2202 CG4082-PA 1321..1454 1346..1479 235 78.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:59:41
Subject Length Description Subject Range Query Range Score Percent Strand
Mcm7-RA 2451 CG4978-RA 154..2317 17..2180 10820 100 Plus
Mcm2-RA 2898 CG7538-RA 1793..1918 1297..1422 240 79.4 Plus
Mcm5-RA 2452 CG4082-RA 1462..1595 1346..1479 235 78.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8892854..8893911 920..1977 5290 100 Plus
3L 28110227 3L 8892285..8892786 418..919 2510 100 Plus
3L 28110227 3L 8891842..8892213 46..417 1860 100 Plus
3L 28110227 3L 8893974..8894176 1978..2180 1015 100 Plus
3R 32079331 3R 8266762..8266887 1297..1422 240 79.4 Plus
3R 32079331 3R 10790097..10790230 1346..1479 235 78.4 Plus
X 23542271 X 5325179..5325265 1322..1408 210 82.8 Plus
Blast to na_te.dros performed on 2014-11-27 12:59:39 has no hits.

BS14059.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:20:58 Download gff for BS14059.complete
Subject Subject Range Query Range Percent Splice Strand
Mcm7-RA 140..2303 17..2180 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:39:32 Download gff for BS14059.complete
Subject Subject Range Query Range Percent Splice Strand
Mcm7-RA 154..2316 17..2179 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:16:20 Download gff for BS14059.complete
Subject Subject Range Query Range Percent Splice Strand
Mcm7-RA 140..2302 17..2179 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:49 Download gff for BS14059.complete
Subject Subject Range Query Range Percent Splice Strand
Mcm7-RA 154..2316 17..2179 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:49 Download gff for BS14059.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8891749..8891779 17..47 100 -> Plus
3L 8891844..8892213 48..417 100 -> Plus
3L 8892285..8892786 418..919 100 -> Plus
3L 8892854..8893911 920..1977 100 -> Plus
3L 8893974..8894175 1978..2179 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:39:32 Download gff for BS14059.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8887074..8887275 1978..2179 100   Plus
arm_3L 8884849..8884879 17..47 100 -> Plus
arm_3L 8884944..8885313 48..417 100 -> Plus
arm_3L 8885385..8885886 418..919 100 -> Plus
arm_3L 8885954..8887011 920..1977 100 -> Plus

BS14059.pep Sequence

Translation from 16 to 2178

> BS14059.pep
MARRDYAQDRESIKTFLSEFCKCDDDGKKEFVYGSQLVKLAHREQVLITI
DLDDLAEFNESLAEAVVDNCRRYTSIFSDVIAELLPSYKQQEVHAKDALD
VYIEHRLMMESRTRNPMEQRDERNSFPSELMKRFEVGFKPLSTEKAHSIR
EVKAQHIGKLVTVRGIVTRCTEVKPMMVVATYTCDRCGSETYQPVNSLSF
TPVHDCPSDDCRVNKAGGRLYLQTRGSKFVKFQEVKMQEHSDQVPVGHIP
RSMTIMCRGEVTRMAQPGDHIVVSGVFLPLMRTGFAQMIQGLLSETFLQA
HRIICINKNDEISDKDAELTPEELEELAQDDFYERLATSLAPEIYGHLDV
KKALLLLLVGGVDKRPDGMKIRGNINICLMGDPGVAKSQLLGYISRLAVR
SQYTTGRGSSGVGLTAAVMKDPLTGEMTLEGGALVLADQGVCCIDEFDKM
ADQDRTAIHEVMEQQTISIAKAGIMTTLNARVSILAAANPAFGRYNPRRT
VEQNIQLPAALLSRFDLLWLIQDKPDRDNDLRLAKHITYVHSHSKQPPTR
VKALDMNLMRRYINLCKRKNPTIPDELTDYIVGAYVELRREARNQKDMTF
TSARNLLGILRLSTALARLRLSDSVEKDDVAEALRLLEMSKDSLNQIHEH
QKGHVPNTSDRIFAIVRELAGSGKAVKISDIMDRCTTKGFKPDQVDKCID
DYEELNVWQVNMGRTKITFM*

BS14059.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
Mcm7-PA 720 CG4978-PA 1..720 1..720 3705 100 Plus
dpa-PB 866 CG1616-PB 252..766 126..636 854 38.6 Plus
dpa-PA 866 CG1616-PA 252..766 126..636 854 38.6 Plus
Mcm3-PB 818 CG4206-PB 97..645 136..640 818 37.8 Plus
Mcm5-PA 733 CG4082-PA 35..646 10..640 817 33 Plus