Clone Sequence Records
BS14060.5prime Sequence
662 bp (551 high quality bases) assembled on 2006-10-13
> BS14060.5prime
GAAGTTATCAGTCGACATGGAATATCAGAAACGCACTCCCAAACGCCGCT
CGTTCATTGAGCGGGCGCAGAAGGAAAGCGAGGAGCTTGTGCGAACAATG
GGCGGAAGCCTGGAGCTGGCGGGCGGGCGGCGGACGCGGTCTAGCACTCG
AGGAACGCCGACGCGAGCCGCCGAGGCAGTGACGCCGCCACCCAGCAAAA
AGGCGCGCACTTCGCCGGCCTCGGCCACAAAGGCCAGTGCAGGAAAGGGA
CGCGGAGCACGTAAGCTAGACGTAGGCGCTGATGAGCCCGAGCCTGAGCT
GGAGAAGGAGAAGGAGAAGGTACAGACCTCGGTCAAGGGAAAGGGAGCTG
TCAAGAAGGACAAGAAAGAGGTCAAGAAGCAGGAGAAGGCAACTGAGAAA
TATGCGCCGGAGGAGGCAAAGGAAGATGTAGCTGAGGCAAAAGAGGAAGA
CGCCAGTCCCGCCGGGGTCCAGGACCAACCGGATGGTGTGGAGAATCTTC
CTTCAGTGGCGGAAGCGAAGCAGAATCATGTCGATGAAGTCAAACCAATA
TCAGAAGAACCTGGGAATTCAAGCGAAGAGGTGCCAAAAGCTGAAGAGCC
CCTCAAGTCGAGCGGAGAAACGTCGGAGAATGGAGCCGCTACAGAGACTG
CCCGCTGCACCT
BS14060.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:23:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1910-PC | 1401 | CG1910-RC | 1..645 | 17..662 | 3190 | 99.8 | Plus |
CG1910-PA | 1470 | CG1910-RA | 82..714 | 29..662 | 3130 | 99.8 | Plus |
CG1910-PB | 1320 | CG1910-RB | 1..564 | 98..662 | 2785 | 99.8 | Plus |
CG1910-PD | 1320 | CG1910-RD | 1..564 | 98..662 | 2785 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:25:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1910-RC | 2628 | CG1910-RC | 46..690 | 17..662 | 3205 | 99.8 | Plus |
CG1910-RD | 2698 | CG1910-RD | 128..760 | 29..662 | 3145 | 99.8 | Plus |
CG1910-RA | 3015 | CG1910-RA | 445..1077 | 29..662 | 3145 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:25:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31749204..31749522 | 26..344 | 1595 | 100 | Plus |
3R | 32079331 | 3R | 31749578..31749889 | 341..652 | 1560 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:25:24 has no hits.
BS14060.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:17 Download gff for
BS14060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-PC | 1..645 | 17..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:51:05 Download gff for
BS14060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RC | 46..690 | 17..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:54:45 Download gff for
BS14060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RC | 46..690 | 17..662 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:54:45 Download gff for
BS14060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31749581..31749898 | 344..662 | 99 | | Plus |
3R | 31749202..31749521 | 23..343 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:51:05 Download gff for
BS14060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27574924..27575243 | 23..343 | 99 | -> | Plus |
arm_3R | 27575303..27575620 | 344..662 | 99 | | Plus |
BS14060.3prime Sequence
523 bp (508 high quality bases) assembled on 2006-10-13
> BS14060.3prime
ATGGTCTAGAAAGCTTTTAGTTACACACTTTGGGCGCAGCATTCTCGCCC
ACCTCGGCGGAACTGTTGACGATCTTGGGCTCACCATTTACATTAATTTC
GGCCTTCTTGACCTCGCAGATTTCCTGTGGTTCCTTTGCAGGACTGTCGG
CAGTCTTAACCAAGGTTGTATCGATTTCCAAGGGCTTGCTGACATCATTG
GATGCGGGGGCGGTAGAAACATCAATAGGAACGGGCGTGGCGCTCTCATC
CGTATTGCTCTCTGCCTCCTTGGGTTCCGCAGAGTCCACAACCTTGCTAG
GCTCCTCTTCGCTGCTGGCGGCTTCCTTCGGCTCAGTCACCACCACGGTG
CTGGTTTCCGTAAGCTCTTCCGCGGACTCTACAGTGCTCTCGGCTTCCTT
GGGCTCGGCAGCGGGCACTTCTAAAACTGTTTCTTTGCCCTCTGTGGCCA
CTTCCACCACATCATTGCTAGACTCCGTAGTCTTTGCTGCTGCTTCTGTT
TCTGGAGCGGCAGAAACGTTTTC
BS14060.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:23:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1910-PB | 1320 | CG1910-RB | 814..1320 | 523..17 | 2510 | 99.8 | Minus |
CG1910-PA | 1470 | CG1910-RA | 964..1470 | 523..17 | 2510 | 99.8 | Minus |
CG1910-PD | 1320 | CG1910-RD | 814..1320 | 523..17 | 2510 | 99.8 | Minus |
CG1910-PC | 1401 | CG1910-RC | 895..1401 | 523..17 | 2510 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:25:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1910-RC | 2628 | CG1910-RC | 940..1447 | 523..16 | 2525 | 99.8 | Minus |
CG1910-RD | 2698 | CG1910-RD | 1010..1517 | 523..16 | 2525 | 99.8 | Minus |
CG1910-RA | 3015 | CG1910-RA | 1327..1834 | 523..16 | 2525 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:25:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31750148..31750592 | 523..79 | 2195 | 99.6 | Minus |
3R | 32079331 | 3R | 31750644..31750713 | 85..16 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:25:37 has no hits.
BS14060.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:17 Download gff for
BS14060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-PC | 895..1401 | 17..523 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:08:39 Download gff for
BS14060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RA | 1327..1840 | 9..523 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:12:05 Download gff for
BS14060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RA | 1327..1840 | 9..523 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:12:05 Download gff for
BS14060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31750148..31750586 | 85..523 | 99 | -> | Minus |
3R | 31750645..31750719 | 9..84 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:08:39 Download gff for
BS14060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27575870..27576308 | 85..523 | 99 | -> | Minus |
arm_3R | 27576367..27576441 | 9..84 | 94 | | Minus |
BS14060.complete Sequence
1433 bp assembled on 2008-08-15
GenBank Submission: KX804032
> BS14060.complete
GAAGTTATCAGTCGACATGGAATATCAGAAACGCACTCCCAAACGCCGCT
CGTTCATTGAGCGGGCGCAGAAGGAAAGCGAGGAGCTTGTGCGAACAATG
GGCGGAAGCCTGGAGCTGGCGGGCGGGCGGCGGACGCGGTCTAGCACTCG
AGGAACGCCGACGCGAGCCGCCGAGGCAGTGACGCCGCCACCCAGCAAAA
AGGCGCGCACTTCGCCGGCCTCGGCCACAAAGGCCAGTGCAGGAAAGGGA
CGCGGAGCACGTAAGCTAGACGTAGGCGCTGATGAGCCCGAGCCTGAGCT
GGAGAAGGAGAAGGAGAAGGTACAGACCTCGGTCAAGGGAAAGGGAGCTG
TCAAGAAGGACAAGAAAGAGGTCAAGAAGCAGGAGAAGGCAACTGAGAAA
TATGCGCCGGAGGAGGCAAAGGAAGATGTAGCTGAGGCAAAAGAGGAAGA
CGCCAGTCCCGCCGGGGTCCAGGACCAACCGGATGGTGTGGAGAATCTTC
CTTCAGTGGCGGAAGCGAAGCAGAATCATGTCGATGAAGTCAAACCAATA
TCAGAAGAACCTGGGAATTCAAGCGAAGAGGTGCCAAAAGCTGAAGAGCC
CCTCAAGTCGAGCGGAGAAACGTCGGAGAATGGAGCCGCTACAGAGACTG
CCGCTGCACCTAAAGAACCTGCTTCTGTTATGGATGTGGACGAAGATGAG
ACGCTCGTCGAAAACACACCATCCGCAAATAAAGAAAAGGCATTAGATGA
CGAAAAAGAACCAGAACAGAAGTCAGAGGAACATGCAGCAGCAGTTTTGG
AGTCCAAGGAGCAAAATGAGCCAGCCAAGGAGCCCACACCAGAACCTATG
GAAGTGGACGGAAGTTCGAAGGGCAGTTCGGACACCGCTCAAGTAGACAC
ACCAGCCATCGAAAACGTTTCTGCCGCTCCAGAAACAGAAGCAGCAGCAA
AGACTACGGAGTCTAGCAATGATGTGGTGGAAGTGGCCACAGAGGGCAAA
GAAACAGTTTTAGAAGTGCCCGCTGCCGAGCCCAAGGAAGCCGAGAGCAC
TGTAGAGTCCGCGGAAGAGCTTACGGAAACCAGCACCGTGGTGGTGACTG
AGCCGAAGGAAGCCGCCAGCAGCGAAGAGGAGCCTAGCAAGGTTGTGGAC
TCTGCGGAACCCAAGGAGGCAGAGAGCAATACGGATGAGAGCGCCACGCC
CGTTCCTATTGATGTTTCTACCGCCCCCGCATCCAATGATGTCAGCAAGC
CCTTGGAAATCGATACAACCTTGGTTAAGACTGCCGACAGTCCTGCAAAG
GAACCACAGGAAATCTGCGAGGTCAAGAAGGCCGAAATTAATGTAAATGG
TGAGCCCAAGATCGTCAACAGTTCCGCCGAGGTGGGCGAGAATGCTGCGC
CCAAAGTGTGTAACTAAAAGCTTTCTAGACCAT
BS14060.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:05:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1910-RC | 1401 | CG1910-PC | 1..1401 | 17..1417 | 6990 | 99.9 | Plus |
CG1910-RA | 1470 | CG1910-PA | 82..1470 | 29..1417 | 6930 | 99.9 | Plus |
CG1910-RD | 1320 | CG1910-PD | 1..1320 | 98..1417 | 6585 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:05:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1910-RC | 2628 | CG1910-RC | 46..1447 | 17..1418 | 6995 | 99.9 | Plus |
CG1910-RD | 2698 | CG1910-RD | 128..1517 | 29..1418 | 6935 | 99.9 | Plus |
CG1910-RA | 3015 | CG1910-RA | 445..1834 | 29..1418 | 6935 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:05:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31749578..31750592 | 341..1355 | 5045 | 99.8 | Plus |
3R | 32079331 | 3R | 31749204..31749522 | 26..344 | 1595 | 100 | Plus |
3R | 32079331 | 3R | 31750644..31750713 | 1349..1418 | 350 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:05:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 2110..2139 | 830..859 | 114 | 86.7 | Plus |
BS14060.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:23:10 Download gff for
BS14060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RC | 46..1453 | 17..1425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:20 Download gff for
BS14060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RC | 46..1444 | 17..1415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:12:43 Download gff for
BS14060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RC | 46..1444 | 17..1415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:17 Download gff for
BS14060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RC | 46..1444 | 17..1415 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:17 Download gff for
BS14060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31750645..31750710 | 1350..1415 | 100 | | Plus |
3R | 31749202..31749521 | 23..343 | 99 | -> | Plus |
3R | 31749581..31750586 | 344..1349 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:20 Download gff for
BS14060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27576367..27576432 | 1350..1415 | 100 | | Plus |
arm_3R | 27574924..27575243 | 23..343 | 99 | -> | Plus |
arm_3R | 27575303..27576308 | 344..1349 | 99 | -> | Plus |
BS14060.pep Sequence
Translation from 16 to 1416
> BS14060.pep
MEYQKRTPKRRSFIERAQKESEELVRTMGGSLELAGGRRTRSSTRGTPTR
AAEAVTPPPSKKARTSPASATKASAGKGRGARKLDVGADEPEPELEKEKE
KVQTSVKGKGAVKKDKKEVKKQEKATEKYAPEEAKEDVAEAKEEDASPAG
VQDQPDGVENLPSVAEAKQNHVDEVKPISEEPGNSSEEVPKAEEPLKSSG
ETSENGAATETAAAPKEPASVMDVDEDETLVENTPSANKEKALDDEKEPE
QKSEEHAAAVLESKEQNEPAKEPTPEPMEVDGSSKGSSDTAQVDTPAIEN
VSAAPETEAAAKTTESSNDVVEVATEGKETVLEVPAAEPKEAESTVESAE
ELTETSTVVVTEPKEAASSEEEPSKVVDSAEPKEAESNTDESATPVPIDV
STAPASNDVSKPLEIDTTLVKTADSPAKEPQEICEVKKAEINVNGEPKIV
NSSAEVGENAAPKVCN*
BS14060.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:35:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1910-PC | 466 | CG1910-PC | 1..466 | 1..466 | 2320 | 100 | Plus |
CG1910-PA | 489 | CG1910-PA | 28..489 | 5..466 | 2298 | 100 | Plus |
CG1910-PD | 439 | CG1910-PD | 1..439 | 28..466 | 2186 | 100 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 4783..5217 | 8..435 | 206 | 23 | Plus |
Strn-Mlck-PV | 7944 | CG44162-PV | 4822..5256 | 8..435 | 206 | 23 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 3960..4325 | 50..440 | 191 | 23.7 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 4133..4585 | 8..440 | 184 | 22.8 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 4311..4715 | 15..440 | 178 | 22.2 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 4740..5143 | 50..440 | 178 | 21.4 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 3505..3935 | 50..440 | 176 | 23.1 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 4571..4964 | 61..455 | 173 | 21.6 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 3743..4192 | 8..463 | 172 | 21.4 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 4701..5107 | 61..440 | 164 | 23.3 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 4913..5262 | 8..374 | 164 | 24.1 | Plus |