Clone BS14060 Report

Search the DGRC for BS14060

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:140
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG1910-RC
Protein status:BS14060.pep: full length peptide match
Sequenced Size:1433

Clone Sequence Records

BS14060.5prime Sequence

662 bp (551 high quality bases) assembled on 2006-10-13

> BS14060.5prime
GAAGTTATCAGTCGACATGGAATATCAGAAACGCACTCCCAAACGCCGCT
CGTTCATTGAGCGGGCGCAGAAGGAAAGCGAGGAGCTTGTGCGAACAATG
GGCGGAAGCCTGGAGCTGGCGGGCGGGCGGCGGACGCGGTCTAGCACTCG
AGGAACGCCGACGCGAGCCGCCGAGGCAGTGACGCCGCCACCCAGCAAAA
AGGCGCGCACTTCGCCGGCCTCGGCCACAAAGGCCAGTGCAGGAAAGGGA
CGCGGAGCACGTAAGCTAGACGTAGGCGCTGATGAGCCCGAGCCTGAGCT
GGAGAAGGAGAAGGAGAAGGTACAGACCTCGGTCAAGGGAAAGGGAGCTG
TCAAGAAGGACAAGAAAGAGGTCAAGAAGCAGGAGAAGGCAACTGAGAAA
TATGCGCCGGAGGAGGCAAAGGAAGATGTAGCTGAGGCAAAAGAGGAAGA
CGCCAGTCCCGCCGGGGTCCAGGACCAACCGGATGGTGTGGAGAATCTTC
CTTCAGTGGCGGAAGCGAAGCAGAATCATGTCGATGAAGTCAAACCAATA
TCAGAAGAACCTGGGAATTCAAGCGAAGAGGTGCCAAAAGCTGAAGAGCC
CCTCAAGTCGAGCGGAGAAACGTCGGAGAATGGAGCCGCTACAGAGACTG
CCCGCTGCACCT

BS14060.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG1910-PC 1401 CG1910-RC 1..645 17..662 3190 99.8 Plus
CG1910-PA 1470 CG1910-RA 82..714 29..662 3130 99.8 Plus
CG1910-PB 1320 CG1910-RB 1..564 98..662 2785 99.8 Plus
CG1910-PD 1320 CG1910-RD 1..564 98..662 2785 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:25:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG1910-RC 2628 CG1910-RC 46..690 17..662 3205 99.8 Plus
CG1910-RD 2698 CG1910-RD 128..760 29..662 3145 99.8 Plus
CG1910-RA 3015 CG1910-RA 445..1077 29..662 3145 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:25:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31749204..31749522 26..344 1595 100 Plus
3R 32079331 3R 31749578..31749889 341..652 1560 100 Plus
Blast to na_te.dros performed on 2015-02-13 16:25:24 has no hits.

BS14060.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:17 Download gff for BS14060.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-PC 1..645 17..662 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:51:05 Download gff for BS14060.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-RC 46..690 17..662 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:54:45 Download gff for BS14060.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-RC 46..690 17..662 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:54:45 Download gff for BS14060.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31749581..31749898 344..662 99   Plus
3R 31749202..31749521 23..343 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:51:05 Download gff for BS14060.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27574924..27575243 23..343 99 -> Plus
arm_3R 27575303..27575620 344..662 99   Plus

BS14060.3prime Sequence

523 bp (508 high quality bases) assembled on 2006-10-13

> BS14060.3prime
ATGGTCTAGAAAGCTTTTAGTTACACACTTTGGGCGCAGCATTCTCGCCC
ACCTCGGCGGAACTGTTGACGATCTTGGGCTCACCATTTACATTAATTTC
GGCCTTCTTGACCTCGCAGATTTCCTGTGGTTCCTTTGCAGGACTGTCGG
CAGTCTTAACCAAGGTTGTATCGATTTCCAAGGGCTTGCTGACATCATTG
GATGCGGGGGCGGTAGAAACATCAATAGGAACGGGCGTGGCGCTCTCATC
CGTATTGCTCTCTGCCTCCTTGGGTTCCGCAGAGTCCACAACCTTGCTAG
GCTCCTCTTCGCTGCTGGCGGCTTCCTTCGGCTCAGTCACCACCACGGTG
CTGGTTTCCGTAAGCTCTTCCGCGGACTCTACAGTGCTCTCGGCTTCCTT
GGGCTCGGCAGCGGGCACTTCTAAAACTGTTTCTTTGCCCTCTGTGGCCA
CTTCCACCACATCATTGCTAGACTCCGTAGTCTTTGCTGCTGCTTCTGTT
TCTGGAGCGGCAGAAACGTTTTC

BS14060.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG1910-PB 1320 CG1910-RB 814..1320 523..17 2510 99.8 Minus
CG1910-PA 1470 CG1910-RA 964..1470 523..17 2510 99.8 Minus
CG1910-PD 1320 CG1910-RD 814..1320 523..17 2510 99.8 Minus
CG1910-PC 1401 CG1910-RC 895..1401 523..17 2510 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1910-RC 2628 CG1910-RC 940..1447 523..16 2525 99.8 Minus
CG1910-RD 2698 CG1910-RD 1010..1517 523..16 2525 99.8 Minus
CG1910-RA 3015 CG1910-RA 1327..1834 523..16 2525 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:25:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31750148..31750592 523..79 2195 99.6 Minus
3R 32079331 3R 31750644..31750713 85..16 350 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:25:37 has no hits.

BS14060.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:17 Download gff for BS14060.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-PC 895..1401 17..523 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:08:39 Download gff for BS14060.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-RA 1327..1840 9..523 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:12:05 Download gff for BS14060.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-RA 1327..1840 9..523 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:12:05 Download gff for BS14060.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31750148..31750586 85..523 99 -> Minus
3R 31750645..31750719 9..84 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:08:39 Download gff for BS14060.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27575870..27576308 85..523 99 -> Minus
arm_3R 27576367..27576441 9..84 94   Minus

BS14060.complete Sequence

1433 bp assembled on 2008-08-15

GenBank Submission: KX804032

> BS14060.complete
GAAGTTATCAGTCGACATGGAATATCAGAAACGCACTCCCAAACGCCGCT
CGTTCATTGAGCGGGCGCAGAAGGAAAGCGAGGAGCTTGTGCGAACAATG
GGCGGAAGCCTGGAGCTGGCGGGCGGGCGGCGGACGCGGTCTAGCACTCG
AGGAACGCCGACGCGAGCCGCCGAGGCAGTGACGCCGCCACCCAGCAAAA
AGGCGCGCACTTCGCCGGCCTCGGCCACAAAGGCCAGTGCAGGAAAGGGA
CGCGGAGCACGTAAGCTAGACGTAGGCGCTGATGAGCCCGAGCCTGAGCT
GGAGAAGGAGAAGGAGAAGGTACAGACCTCGGTCAAGGGAAAGGGAGCTG
TCAAGAAGGACAAGAAAGAGGTCAAGAAGCAGGAGAAGGCAACTGAGAAA
TATGCGCCGGAGGAGGCAAAGGAAGATGTAGCTGAGGCAAAAGAGGAAGA
CGCCAGTCCCGCCGGGGTCCAGGACCAACCGGATGGTGTGGAGAATCTTC
CTTCAGTGGCGGAAGCGAAGCAGAATCATGTCGATGAAGTCAAACCAATA
TCAGAAGAACCTGGGAATTCAAGCGAAGAGGTGCCAAAAGCTGAAGAGCC
CCTCAAGTCGAGCGGAGAAACGTCGGAGAATGGAGCCGCTACAGAGACTG
CCGCTGCACCTAAAGAACCTGCTTCTGTTATGGATGTGGACGAAGATGAG
ACGCTCGTCGAAAACACACCATCCGCAAATAAAGAAAAGGCATTAGATGA
CGAAAAAGAACCAGAACAGAAGTCAGAGGAACATGCAGCAGCAGTTTTGG
AGTCCAAGGAGCAAAATGAGCCAGCCAAGGAGCCCACACCAGAACCTATG
GAAGTGGACGGAAGTTCGAAGGGCAGTTCGGACACCGCTCAAGTAGACAC
ACCAGCCATCGAAAACGTTTCTGCCGCTCCAGAAACAGAAGCAGCAGCAA
AGACTACGGAGTCTAGCAATGATGTGGTGGAAGTGGCCACAGAGGGCAAA
GAAACAGTTTTAGAAGTGCCCGCTGCCGAGCCCAAGGAAGCCGAGAGCAC
TGTAGAGTCCGCGGAAGAGCTTACGGAAACCAGCACCGTGGTGGTGACTG
AGCCGAAGGAAGCCGCCAGCAGCGAAGAGGAGCCTAGCAAGGTTGTGGAC
TCTGCGGAACCCAAGGAGGCAGAGAGCAATACGGATGAGAGCGCCACGCC
CGTTCCTATTGATGTTTCTACCGCCCCCGCATCCAATGATGTCAGCAAGC
CCTTGGAAATCGATACAACCTTGGTTAAGACTGCCGACAGTCCTGCAAAG
GAACCACAGGAAATCTGCGAGGTCAAGAAGGCCGAAATTAATGTAAATGG
TGAGCCCAAGATCGTCAACAGTTCCGCCGAGGTGGGCGAGAATGCTGCGC
CCAAAGTGTGTAACTAAAAGCTTTCTAGACCAT

BS14060.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:05:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG1910-RC 1401 CG1910-PC 1..1401 17..1417 6990 99.9 Plus
CG1910-RA 1470 CG1910-PA 82..1470 29..1417 6930 99.9 Plus
CG1910-RD 1320 CG1910-PD 1..1320 98..1417 6585 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:05:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG1910-RC 2628 CG1910-RC 46..1447 17..1418 6995 99.9 Plus
CG1910-RD 2698 CG1910-RD 128..1517 29..1418 6935 99.9 Plus
CG1910-RA 3015 CG1910-RA 445..1834 29..1418 6935 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:05:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31749578..31750592 341..1355 5045 99.8 Plus
3R 32079331 3R 31749204..31749522 26..344 1595 100 Plus
3R 32079331 3R 31750644..31750713 1349..1418 350 100 Plus
Blast to na_te.dros performed 2014-11-28 00:05:28
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy3 6973 gypsy3 GYPSY3 6973bp 2110..2139 830..859 114 86.7 Plus

BS14060.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:23:10 Download gff for BS14060.complete
Subject Subject Range Query Range Percent Splice Strand
CG1910-RC 46..1453 17..1425 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:20 Download gff for BS14060.complete
Subject Subject Range Query Range Percent Splice Strand
CG1910-RC 46..1444 17..1415 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:12:43 Download gff for BS14060.complete
Subject Subject Range Query Range Percent Splice Strand
CG1910-RC 46..1444 17..1415 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:17 Download gff for BS14060.complete
Subject Subject Range Query Range Percent Splice Strand
CG1910-RC 46..1444 17..1415 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:17 Download gff for BS14060.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31750645..31750710 1350..1415 100   Plus
3R 31749202..31749521 23..343 99 -> Plus
3R 31749581..31750586 344..1349 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:20 Download gff for BS14060.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27576367..27576432 1350..1415 100   Plus
arm_3R 27574924..27575243 23..343 99 -> Plus
arm_3R 27575303..27576308 344..1349 99 -> Plus

BS14060.pep Sequence

Translation from 16 to 1416

> BS14060.pep
MEYQKRTPKRRSFIERAQKESEELVRTMGGSLELAGGRRTRSSTRGTPTR
AAEAVTPPPSKKARTSPASATKASAGKGRGARKLDVGADEPEPELEKEKE
KVQTSVKGKGAVKKDKKEVKKQEKATEKYAPEEAKEDVAEAKEEDASPAG
VQDQPDGVENLPSVAEAKQNHVDEVKPISEEPGNSSEEVPKAEEPLKSSG
ETSENGAATETAAAPKEPASVMDVDEDETLVENTPSANKEKALDDEKEPE
QKSEEHAAAVLESKEQNEPAKEPTPEPMEVDGSSKGSSDTAQVDTPAIEN
VSAAPETEAAAKTTESSNDVVEVATEGKETVLEVPAAEPKEAESTVESAE
ELTETSTVVVTEPKEAASSEEEPSKVVDSAEPKEAESNTDESATPVPIDV
STAPASNDVSKPLEIDTTLVKTADSPAKEPQEICEVKKAEINVNGEPKIV
NSSAEVGENAAPKVCN*

BS14060.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:35:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG1910-PC 466 CG1910-PC 1..466 1..466 2320 100 Plus
CG1910-PA 489 CG1910-PA 28..489 5..466 2298 100 Plus
CG1910-PD 439 CG1910-PD 1..439 28..466 2186 100 Plus
Strn-Mlck-PT 7905 CG44162-PT 4783..5217 8..435 206 23 Plus
Strn-Mlck-PV 7944 CG44162-PV 4822..5256 8..435 206 23 Plus
Strn-Mlck-PT 7905 CG44162-PT 3960..4325 50..440 191 23.7 Plus
Strn-Mlck-PT 7905 CG44162-PT 4133..4585 8..440 184 22.8 Plus
Strn-Mlck-PT 7905 CG44162-PT 4311..4715 15..440 178 22.2 Plus
Strn-Mlck-PT 7905 CG44162-PT 4740..5143 50..440 178 21.4 Plus
Strn-Mlck-PT 7905 CG44162-PT 3505..3935 50..440 176 23.1 Plus
Strn-Mlck-PT 7905 CG44162-PT 4571..4964 61..455 173 21.6 Plus
Strn-Mlck-PT 7905 CG44162-PT 3743..4192 8..463 172 21.4 Plus
Strn-Mlck-PT 7905 CG44162-PT 4701..5107 61..440 164 23.3 Plus
Strn-Mlck-PT 7905 CG44162-PT 4913..5262 8..374 164 24.1 Plus