Clone BS14063 Report

Search the DGRC for BS14063

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:140
Well:63
Vector:pDNR-Dual
Associated Gene/Transcriptslim-RA
Protein status:BS14063.pep: full length peptide match
Sequenced Size:1862

Clone Sequence Records

BS14063.3prime Sequence

554 bp (467 high quality bases) assembled on 2006-10-13

> BS14063.3prime
ATGGTCTAGAAAGCTTCTATTGCGTCGAGGAGCGGGCACGTTTCGGGTTC
GAGTACAGCGAAATTAGCATGGACGGGTCTGGCTGGCTCGTGTCCAAACG
CCTCCTGCGCTGCGGCGGCAGGCGTTCCGTAAAACGTTTCGGTATACCGG
CTTCCAGTAGCGTTTTTCGGTCGTACAAATCAAGATTGTCGTTATAGTAT
GTGATGGCGTCCCAGCACATTTCGCTCAGTTTGGGCACTGTCATCCACAT
CTTATACAGATCGTTGCGGCGGCGCATCTCCTTGTCAATGTACTCGATGC
CTCCGAATACGTACATGCATCCATTATCGGAGTGGGCCGCCGAGTGGAAG
TAAAGGGGGCGGGGCAGGATGGCGGTCTCGATGCGATACCAATGCTTAGT
GCGCAGATTAAGCTTCCAGATGTCCGAAAAATATGTGGAGAAGTCGCCTT
GCAGACCGCCCGTGATGAAAGCCTCGATGTCCCCAGTGGAGGACTGGTGC
TGCACACAGGAAAAACACTTTGCGCGCCTTTGGATAGCCTCTGTTGCCGT
CGTC

BS14063.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:23:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5186-PB 1884 slim-RB 1348..1884 554..17 2600 99.4 Minus
CG5186-PA 1830 slim-RA 1294..1830 554..17 2600 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
slim-RC 2510 CG5186-RC 1803..2339 554..17 2635 99.4 Minus
slim-RA 3081 CG5186-RA 1803..2339 554..17 2635 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:37:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18444348..18444784 453..17 2170 99.8 Minus
2R 25286936 2R 18444108..18444213 554..448 455 97.2 Minus
Blast to na_te.dros performed on 2015-02-12 04:37:39 has no hits.

BS14063.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:19 Download gff for BS14063.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5186-PA 1294..1830 17..554 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:16:53 Download gff for BS14063.3prime
Subject Subject Range Query Range Percent Splice Strand
slim-RA 1803..2341 13..554 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:25:39 Download gff for BS14063.3prime
Subject Subject Range Query Range Percent Splice Strand
slim-RA 1803..2341 13..554 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:25:39 Download gff for BS14063.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18444108..18444212 449..554 97 -> Minus
2R 18444353..18444786 13..448 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:16:53 Download gff for BS14063.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14331613..14331717 449..554 97 -> Minus
arm_2R 14331858..14332291 13..448 99   Minus

BS14063.5prime Sequence

544 bp (492 high quality bases) assembled on 2006-10-13

> BS14063.5prime
GAAGTTATCAGTCGACATGAACATACTAAATCCAGGCAAATTCAAGTGTA
TCGTATTTGACCAACTGCGTCACACTTGGACATTTCTTTTGTTTATCTGC
GACTTCCTGGCGAAGATTTACAGGACGCCTCGTATAACTGCCCACCAGGA
GCAGCTGGCCAACCATAATAATAACAACAACAATAATAACGATCTGATCA
TGGAACAGGACATGCCAGAGGAGGAAGTGGGTCAGCCAGAGGAGGCTCTG
CCGCAGCAGGACAACGGTGAGGTTGTCGACCGTTTCAATGCCATTCAGGC
TGCCGTGGAGCTCATGGACGCAGCCAGCGATTTGGACGAGGAAGAGGAGG
AAGAAGACGACGACGTGGACGTGGATGTGGACTACGGCGATACAGATTCG
GAGTCAGAATTCGAAGAGATGTACTCCGACGAGTGGACCAGTTCCAGCGA
TGAGCTGGACGAGGGTACAGAGCTATCTAAGAGTGTCTTGAATGTCTTCC
TCTCGTCGGATAAACAGCAATCTCAAATGGGCCGGACAGATTTC

BS14063.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5186-PB 1884 slim-RB 55..579 17..542 2590 99.8 Plus
CG5186-PA 1830 slim-RA 1..525 17..542 2590 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:05:48
Subject Length Description Subject Range Query Range Score Percent Strand
slim-RC 2510 CG5186-RC 510..1034 17..542 2605 99.8 Plus
slim-RA 3081 CG5186-RA 510..1034 17..542 2605 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18441474..18441998 17..542 2580 99.8 Plus
Blast to na_te.dros performed 2015-02-10 23:05:45
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 22..50 161..189 118 89.7 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7060..7088 161..189 118 89.7 Plus
Stalker4 7359 Stalker4 STALKER4 7359bp 2873..2928 166..219 112 71.4 Plus
Stalker 7256 Stalker STALKER 7256bp 2767..2822 166..219 112 71.4 Plus

BS14063.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:20 Download gff for BS14063.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5186-PA 1..526 17..544 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:55:58 Download gff for BS14063.5prime
Subject Subject Range Query Range Percent Splice Strand
slim-RA 504..1035 10..544 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:18:08 Download gff for BS14063.5prime
Subject Subject Range Query Range Percent Splice Strand
slim-RA 504..1035 10..544 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:18:08 Download gff for BS14063.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18441468..18441999 10..544 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:55:58 Download gff for BS14063.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14328973..14329504 10..544 99   Plus

BS14063.complete Sequence

1862 bp assembled on 2008-08-15

GenBank Submission: KX804414

> BS14063.complete
GAAGTTATCAGTCGACATGAACATACTAAATCCAGGCAAATTCAAGTGTA
TCGTATTTGACCAACTGCGTCACACTTGGACATTTCTTTTGTTTATCTGC
GACTTCCTGGCGAAGATTTACAGGACGCCTCGTATAACTGCCCACCAGGA
GCAGCTGGCCAACCATAATAATAACAACAACAATAATAACGATCTGATCA
TGGAACAGGACATGCCAGAGGAGGAAGTGGGTCAGCCAGAGGAGGCTCTG
CCGCAGCAGGACAACGGTGAGGTTGTCGACCGTTTCAATGCCATTCAGGC
TGCCGTGGAGCTCATGGACGCAGCCAGCGATTTGGACGAGGAAGAGGAGG
AAGAAGACGACGACGTGGACGTGGATGTGGACTACGGCGATACAGATTCG
GAGTCAGAATTCGAAGAGATGTACTCCGACGAGTGGACCAGTTCCAGCGA
TGAGCTGGACGAGGGTACAGAGCTATCTAAGAGTGTCTTGAATGTCTTCC
TCTCGTCGGATAAACAGCAATCTCAAATGGCCGGACAGATTCCCATGTAC
GCCTTCCAGCCGTTGCGTCTCGTCAAGTGCCAGTACAGGGATAAACATAT
ACCCGGTGGATTCCCTCTGGCACGCAGTGGCCACCGGATCATTGCCTCCA
ATTCGCATCTGTATTCCCTGGGTGGCTACAATCCGCGGAGCGCCATGTCT
GCATCACGCCACGGCCGATGTCTTCTCTTCCAGGAGCTGTGGAGCTACAA
CTTTGCCACGAGAACCTGGAGGCTGGAGCTGAATGCGGGCAATGCCGCCA
ATATGCCCGTGGAGCTGGCCTCCAATGCATTGACCATTCACAATAACGTG
TTGATTTCTCATGGCGGCACTGGTTATCCATTTGGAGTATCCTGCTCCAA
CGACTGTTACGTTTACCGAACGGCCAGCGCTGGCGCGACACCGGGCGTGG
ATCGCCTCCAGGTTAAGGGTGACCTGCCCACGGCTCAGTACGGACCGGGA
ATAGTGATCCACAAGCACTTCCTCTACACAATCGGCGGAACGACGGGATT
TGATTACACTTGTGATGTTTATCGTTTGGATTTGCGCACCGGTATATGGG
AGAATGTGTACATAAGTCGTCCGGAGATGCGAGACGACCCAGAAGGGCGC
TACCGTCACGAGGTCGTTTATGATGGCAAGCACATCTTTGTGCTGGGCGG
CGGCACATCGCACTCTGTATACGATTTGCAGCGCATTCCGGCTTACAACC
TGGAGGCGAACTGCTGGGATTACTTTGAAACGTATCCCGATCAGCGTGCA
GCTGATGCGGACGACGGCAACAGAGGCTATCCAAAGCCGCGCAAGTGCTT
TTCCTGTGTGCAGCACCAGTCCTCCACTGGGGACATCGAGGCTTTCATCA
CGGGCGGTCTGCAAGGCGACTTCTCCACATATTTTTCGGACATCTGGAAG
CTTAATCTGCGCACTAAGCATTGGTATCGCATCGAGACCGCCATCCTGCC
CCGCCCCCTTTACTTCCACTCGGCGGCCCACTCCGATAATGGATGCATGT
ACGTATTCGGAGGCATCGAGTACATTGACAAGGAGATGCGCCGCCGCAAC
GATCTGTATAAGATGTGGATGACAGTGCCCAAACTGAGCGAAATGTGCTG
GGACGCCATCACATACTATAACGACAATCTTGATTTGTACGACCGAAAAA
CGCTACTGGAAGCCGGTATACCGAAACGTTTTACGGAACGCCTGCCGCCG
CAGCGCAGGAGGCGTTTGGACACGAGCCAGCCAGACCCGTCCATGCTAAT
TTCGCTGTACTCGAACCCGAAACGTGCCCGCTCCTCGACGCAATAGAAGC
TTTCTAGACCAT

BS14063.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
slim-RC 1830 CG5186-PC 1..1830 17..1846 9150 100 Plus
slim-RA 1830 CG5186-PA 1..1830 17..1846 9150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
slim-RC 2510 CG5186-RC 510..2339 17..1846 9150 100 Plus
slim-RA 3081 CG5186-RA 510..2339 17..1846 9150 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18441474..18442313 17..856 4200 100 Plus
2R 25286936 2R 18443655..18444213 857..1415 2795 100 Plus
2R 25286936 2R 18444348..18444784 1410..1846 2170 99.8 Plus
Blast to na_te.dros performed 2014-11-28 00:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 22..50 161..189 118 89.7 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7060..7088 161..189 118 89.7 Plus

BS14063.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:29:48 Download gff for BS14063.complete
Subject Subject Range Query Range Percent Splice Strand
slim-RA 512..2349 10..1850 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:50 Download gff for BS14063.complete
Subject Subject Range Query Range Percent Splice Strand
slim-RA 510..2339 17..1846 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:07:44 Download gff for BS14063.complete
Subject Subject Range Query Range Percent Splice Strand
slim-RA 518..2347 17..1846 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:39 Download gff for BS14063.complete
Subject Subject Range Query Range Percent Splice Strand
slim-RA 510..2339 17..1846 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:39 Download gff for BS14063.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18441474..18442313 17..856 100 -> Plus
2R 18443655..18444212 857..1414 100 -> Plus
2R 18444353..18444784 1415..1846 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:50 Download gff for BS14063.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14328979..14329818 17..856 100 -> Plus
arm_2R 14331160..14331717 857..1414 100 -> Plus
arm_2R 14331858..14332289 1415..1846 100   Plus

BS14063.pep Sequence

Translation from 16 to 1845

> BS14063.pep
MNILNPGKFKCIVFDQLRHTWTFLLFICDFLAKIYRTPRITAHQEQLANH
NNNNNNNNDLIMEQDMPEEEVGQPEEALPQQDNGEVVDRFNAIQAAVELM
DAASDLDEEEEEEDDDVDVDVDYGDTDSESEFEEMYSDEWTSSSDELDEG
TELSKSVLNVFLSSDKQQSQMAGQIPMYAFQPLRLVKCQYRDKHIPGGFP
LARSGHRIIASNSHLYSLGGYNPRSAMSASRHGRCLLFQELWSYNFATRT
WRLELNAGNAANMPVELASNALTIHNNVLISHGGTGYPFGVSCSNDCYVY
RTASAGATPGVDRLQVKGDLPTAQYGPGIVIHKHFLYTIGGTTGFDYTCD
VYRLDLRTGIWENVYISRPEMRDDPEGRYRHEVVYDGKHIFVLGGGTSHS
VYDLQRIPAYNLEANCWDYFETYPDQRAADADDGNRGYPKPRKCFSCVQH
QSSTGDIEAFITGGLQGDFSTYFSDIWKLNLRTKHWYRIETAILPRPLYF
HSAAHSDNGCMYVFGGIEYIDKEMRRRNDLYKMWMTVPKLSEMCWDAITY
YNDNLDLYDRKTLLEAGIPKRFTERLPPQRRRRLDTSQPDPSMLISLYSN
PKRARSSTQ*

BS14063.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
slim-PC 609 CG5186-PC 1..609 1..609 3295 100 Plus
slim-PA 609 CG5186-PA 1..609 1..609 3295 100 Plus