Clone Sequence Records
BS14065.3prime Sequence
567 bp (507 high quality bases) assembled on 2006-10-13
> BS14065.3prime
ATGGTCTAGAAAGCTTTTACAACTCGTCCTTCTTGGGCGCCTCCTCCTCC
TCCTCGGTCTCCTCGACGGGCTCGGAATCGGCCACCTCACCGTTGGCATC
GAGGAACTTGACGAAATCATCGAGAGTCCTGTCCAGGTTGAAGTCGATGA
CCTTGTTGTCCTCCTTGCGGAAGTATTTGATTGTGGGGAAGGACGAGATC
TTAATGCTCTCCAGCTCGTTGGCAGTGGAGTCCATCTTGGCAATGACAAT
ATCCTCATTGTCCTTGTACTTCTCAGCCAGCTGGTCGTAGATGGGGGCCA
GCTGCTTGCAGTGTCCGCACCATGGGGCGTAGAACTCAACCAGCACGCTC
TTGCTCTTGTCCAGGGCAACGCTCTCGAAGTTGCTGGATACCAGCACCTT
GACGGGGTTCTTGTCCCAATCCTCGGGCAGCTCCTGGGAAAGGAGGTGTT
GCTTCAGCTTGCCGTCCAGGGAACTTCTTAAGGAACGCCTCGATGGTCTC
GGCGGACAGAACGTCCGAATCGGGCTTGTACTTGGCCATGTCCTCTTCCA
GCTTGATCAGACGGATG
BS14065.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:24:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6988-PA | 1491 | Pdi-RA | 942..1491 | 567..17 | 2665 | 99.4 | Minus |
| CG6988-PD | 573 | Pdi-RD | 24..573 | 567..17 | 2665 | 99.4 | Minus |
| CG6988-PB | 528 | Pdi-RB | 150..468 | 334..16 | 1595 | 100 | Minus |
| CG6988-PA | 1491 | Pdi-RA | 138..179 | 347..306 | 185 | 97.6 | Minus |
| CG8983-PB | 1095 | ERp60-RB | 785..825 | 339..299 | 155 | 95.1 | Minus |
| CG8983-PA | 1470 | ERp60-RA | 1160..1200 | 339..299 | 155 | 95.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:16:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdi-RE | 2328 | CG6988-RE | 1329..1879 | 567..16 | 2705 | 99.5 | Minus |
| Pdi-RA | 2080 | CG6988-RA | 1081..1631 | 567..16 | 2705 | 99.5 | Minus |
| ERp60-RA | 1807 | CG8983-RA | 1315..1440 | 344..216 | 275 | 82.3 | Minus |
| Pdi-RE | 2328 | CG6988-RE | 525..566 | 347..306 | 195 | 97.6 | Minus |
| Pdi-RA | 2080 | CG6988-RA | 277..318 | 347..306 | 195 | 97.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:16:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15138187..15138737 | 16..567 | 2680 | 99.5 | Plus |
| 2R | 25286936 | 2R | 11887985..11888060 | 269..344 | 245 | 88.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:16:22 has no hits.
BS14065.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:21 Download gff for
BS14065.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6988-PD | 24..573 | 17..567 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:38:03 Download gff for
BS14065.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdi-RA | 1081..1631 | 16..567 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:58 Download gff for
BS14065.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdi-RA | 1081..1631 | 16..567 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:58 Download gff for
BS14065.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15138187..15138737 | 16..567 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:38:03 Download gff for
BS14065.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15131287..15131837 | 16..567 | 99 | | Plus |
BS14065.5prime Sequence
584 bp (567 high quality bases) assembled on 2006-10-13
> BS14065.5prime
GAAGTTATCAGTCGACATGAAATTCCTGATCTGTGCACTTTTCTTGGCGG
CGTCCTACGTGGCCGCTTCCGCCGAGGCGGAGGTCAAAGTTGAGGAGGGT
GTTCTGGTGGCGACGGTGGACAACTTCAAGCAGCTGATTGCCGACAACGA
GTTCGTGCTGGTCGAGTTCTACGCCCCATGGTGCGGACACTGCAAAGCTC
TGGCTCCCGAGTACGCCAAGGCTGCCCAGCAACTGGCCGAGAAGGAGTCG
CCCATCAAGCTGGCCAAGGTCGATGCCACCGTCGAGGGTGAGCTGGCCGA
GCAGTACGCCGTCCGTGGCTACCCCACTCTGAAGTTCTTCCGCAGCGGCT
CTCCAGTGGAGTACAGCGGTGGCCGCCAGGCCGCTGACATCATTGCCTGG
GTGACCAAGAAGACCGGCCCACCAGCCAAGGATCTGACCAGCGTCGCTGA
TGCCGAGCAATTCCTTAAGGACAACGAGATCGCCATCATTGGATTCTTCA
AGGACCTGGAATCGGAGGAGGCCAAGACCTTCACCAAAGTCGCCAACGCC
CTGGACTCGTTCGTCTTTGGGGTGAGCAGCAATG
BS14065.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:24:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6988-PA | 1491 | Pdi-RA | 1..568 | 17..584 | 2815 | 99.8 | Plus |
| CG6988-PB | 528 | Pdi-RB | 1..178 | 17..195 | 855 | 99.4 | Plus |
| CG6988-PA | 1491 | Pdi-RA | 1161..1202 | 154..195 | 185 | 97.6 | Plus |
| CG6988-PD | 573 | Pdi-RD | 243..284 | 154..195 | 185 | 97.6 | Plus |
| CG8983-PB | 1095 | ERp60-RB | 787..818 | 164..195 | 135 | 96.8 | Plus |
| CG8983-PA | 1470 | ERp60-RA | 1162..1193 | 164..195 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:03:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdi-RE | 2328 | CG6988-RE | 388..955 | 17..584 | 2825 | 99.8 | Plus |
| Pdi-RA | 2080 | CG6988-RA | 140..707 | 17..584 | 2825 | 99.8 | Plus |
| Pdi-RE | 2328 | CG6988-RE | 1548..1589 | 154..195 | 195 | 97.6 | Plus |
| Pdi-RA | 2080 | CG6988-RA | 1300..1341 | 154..195 | 195 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:03:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15139111..15139524 | 584..171 | 2055 | 99.8 | Minus |
| 3L | 28110227 | 3L | 15142300..15142453 | 170..17 | 770 | 100 | Minus |
| 3L | 28110227 | 3L | 15138477..15138518 | 195..154 | 195 | 97.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 19:03:11 has no hits.
BS14065.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:21 Download gff for
BS14065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6988-PA | 1..568 | 17..584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:09:19 Download gff for
BS14065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdi-RA | 140..707 | 17..584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:58:00 Download gff for
BS14065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdi-RA | 140..707 | 17..584 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:58:00 Download gff for
BS14065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15139111..15139524 | 171..584 | 99 | <- | Minus |
| 3L | 15142300..15142453 | 17..170 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:09:19 Download gff for
BS14065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15132211..15132624 | 171..584 | 99 | <- | Minus |
| arm_3L | 15135400..15135553 | 17..170 | 100 | | Minus |
BS14065.complete Sequence
1523 bp assembled on 2009-08-24
GenBank Submission: KX802851
> BS14065.complete
GAAGTTATCAGTCGACATGAAATTCCTGATCTGTGCACTTTTCTTGGCGG
CGTCCTACGTGGCCGCTTCCGCCGAGGCGGAGGTCAAAGTTGAGGAGGGT
GTTCTGGTGGCGACGGTGGACAACTTCAAGCAGCTGATTGCCGACAACGA
GTTCGTGCTGGTCGAGTTCTACGCCCCATGGTGCGGACACTGCAAAGCTC
TGGCTCCCGAGTACGCCAAGGCTGCCCAGCAACTGGCCGAGAAGGAGTCG
CCCATCAAGCTGGCCAAGGTCGATGCCACCGTCGAGGGTGAGCTGGCCGA
GCAGTACGCCGTCCGTGGCTACCCCACTCTGAAGTTCTTCCGCAGCGGCT
CTCCAGTGGAGTACAGCGGTGGCCGCCAGGCCGCTGACATCATTGCCTGG
GTGACCAAGAAGACCGGCCCACCAGCCAAGGATCTGACCAGCGTCGCTGA
TGCCGAGCAATTCCTTAAGGACAACGAGATCGCCATCATTGGATTCTTCA
AGGACCTGGAATCGGAGGAGGCCAAGACCTTCACCAAAGTCGCCAACGCC
CTGGACTCGTTCGTCTTTGGTGTGAGCAGCAATGCCGATGTGATTGCCAA
GTACGAGGCTAAGGACAATGGAGTTGTTCTGTTCAAGCCCTTCGACGACA
AGAAGTCCGTGTTCGAGGGTGAGCTGAACGAGGAAAACCTGAAGAAGTTC
GCCCAGGTGCAGTCTCTGCCCCTGATCGTTGACTTCAACCACGAATCTGC
TTCCAAGATCTTCGGTGGCTCGATCAAGTCGCATCTGCTGTTCTTCGTGT
CCAGGGAGGGCGGCCACATCGAGAAGTACGTCGATCCCCTGAAGGAGATC
GCCAAGAAGTACCGCGACGACATCCTGTTCGTGACCATCTCGTCCGACGA
GGAGGACCATACCCGCATCTTCGAGTTCTTCGGCATGAACAAGGAGGAGG
TGCCCACCATCCGTCTGATCAAGCTGGAAGAGGACATGGCCAAGTACAAG
CCCGAATCGGACGATCTGTCCGCCGAGACCATCGAGGCGTTCCTTAAGAA
GTTCCTGGACGGCAAGCTGAAGCAACACCTCCTTTCCCAGGAGCTGCCCG
AGGATTGGGACAAGAACCCCGTCAAGGTGCTGGTATCCAGCAACTTCGAG
AGCGTTGCCCTGGACAAGAGCAAGAGCGTGCTGGTTGAGTTCTACGCCCC
ATGGTGCGGACACTGCAAGCAGCTGGCCCCCATCTACGACCAGCTGGCTG
AGAAGTACAAGGACAATGAGGATATTGTCATTGCCAAGATGGACTCCACT
GCCAACGAGCTGGAGAGCATTAAGATCTCGTCCTTCCCCACAATCAAATA
CTTCCGCAAGGAGGACAACAAGGTCATCGACTTCAACCTGGACAGGACTC
TCGATGATTTCGTCAAGTTCCTCGATGCCAACGGTGAGGTGGCCGATTCC
GAGCCCGTCGAGGAGACCGAGGAGGAGGAGGAGGCGCCCAAGAAGGACGA
GTTGTAAAAGCTTTCTAGACCAT
BS14065.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:37:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdi-RE | 1491 | CG6988-PE | 1..1491 | 17..1507 | 7440 | 99.9 | Plus |
| Pdi-RA | 1491 | CG6988-PA | 1..1491 | 17..1507 | 7440 | 99.9 | Plus |
| ERp60-RA | 1470 | CG8983-PA | 1155..1230 | 1180..1255 | 245 | 88.2 | Plus |
| Pdi-RE | 1491 | CG6988-PE | 138..179 | 1177..1218 | 195 | 97.6 | Plus |
| Pdi-RE | 1491 | CG6988-PE | 1161..1202 | 154..195 | 195 | 97.6 | Plus |
| Pdi-RA | 1491 | CG6988-PA | 138..179 | 1177..1218 | 195 | 97.6 | Plus |
| Pdi-RA | 1491 | CG6988-PA | 1161..1202 | 154..195 | 195 | 97.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdi-RE | 2328 | CG6988-RE | 388..1879 | 17..1508 | 7445 | 99.9 | Plus |
| Pdi-RA | 2080 | CG6988-RA | 140..1631 | 17..1508 | 7445 | 99.9 | Plus |
| ERp60-RA | 1807 | CG8983-RA | 1315..1390 | 1180..1255 | 245 | 88.2 | Plus |
| Pdi-RE | 2328 | CG6988-RE | 1548..1589 | 154..195 | 195 | 97.6 | Plus |
| Pdi-RE | 2328 | CG6988-RE | 525..566 | 1177..1218 | 195 | 97.6 | Plus |
| Pdi-RA | 2080 | CG6988-RA | 277..318 | 1177..1218 | 195 | 97.6 | Plus |
| Pdi-RA | 2080 | CG6988-RA | 1300..1341 | 154..195 | 195 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15138187..15139524 | 1508..171 | 6675 | 99.9 | Minus |
| 3L | 28110227 | 3L | 15142300..15142453 | 170..17 | 770 | 100 | Minus |
| 2R | 25286936 | 2R | 11887985..11888060 | 1255..1180 | 245 | 88.2 | Minus |
| 3L | 28110227 | 3L | 15138477..15138518 | 195..154 | 195 | 97.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:37:24 has no hits.
BS14065.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:46 Download gff for
BS14065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdi-RA | 193..1681 | 17..1505 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:53:00 Download gff for
BS14065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdi-RA | 140..1628 | 17..1505 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:59 Download gff for
BS14065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdi-RA | 140..1628 | 17..1505 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:59 Download gff for
BS14065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15138190..15139524 | 171..1505 | 99 | <- | Minus |
| 3L | 15142300..15142453 | 17..170 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:53:00 Download gff for
BS14065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15131290..15132624 | 171..1505 | 99 | <- | Minus |
| arm_3L | 15135400..15135553 | 17..170 | 100 | | Minus |
BS14065.pep Sequence
Translation from 16 to 1506
> BS14065.pep
MKFLICALFLAASYVAASAEAEVKVEEGVLVATVDNFKQLIADNEFVLVE
FYAPWCGHCKALAPEYAKAAQQLAEKESPIKLAKVDATVEGELAEQYAVR
GYPTLKFFRSGSPVEYSGGRQAADIIAWVTKKTGPPAKDLTSVADAEQFL
KDNEIAIIGFFKDLESEEAKTFTKVANALDSFVFGVSSNADVIAKYEAKD
NGVVLFKPFDDKKSVFEGELNEENLKKFAQVQSLPLIVDFNHESASKIFG
GSIKSHLLFFVSREGGHIEKYVDPLKEIAKKYRDDILFVTISSDEEDHTR
IFEFFGMNKEEVPTIRLIKLEEDMAKYKPESDDLSAETIEAFLKKFLDGK
LKQHLLSQELPEDWDKNPVKVLVSSNFESVALDKSKSVLVEFYAPWCGHC
KQLAPIYDQLAEKYKDNEDIVIAKMDSTANELESIKISSFPTIKYFRKED
NKVIDFNLDRTLDDFVKFLDANGEVADSEPVEETEEEEEAPKKDEL*
BS14065.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:36:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdi-PE | 496 | CG6988-PE | 1..496 | 1..496 | 2531 | 100 | Plus |
| Pdi-PA | 496 | CG6988-PA | 1..496 | 1..496 | 2531 | 100 | Plus |
| ERp60-PA | 489 | CG8983-PA | 9..467 | 10..469 | 678 | 34.9 | Plus |
| CaBP1-PB | 433 | CG5809-PB | 156..283 | 27..149 | 282 | 45.8 | Plus |
| CaBP1-PA | 433 | CG5809-PA | 156..283 | 27..149 | 282 | 45.8 | Plus |
| CaBP1-PB | 433 | CG5809-PB | 5..324 | 7..283 | 239 | 25.7 | Plus |
| ERp60-PA | 489 | CG8983-PA | 366..470 | 29..132 | 207 | 38.9 | Plus |
| CaBP1-PB | 433 | CG5809-PB | 56..260 | 266..468 | 159 | 26.5 | Plus |
| CaBP1-PB | 433 | CG5809-PB | 30..119 | 372..461 | 155 | 36.7 | Plus |
