Clone Sequence Records
BS14068.complete Sequence
1286 bp assembled on 2009-12-07
GenBank Submission: KX802288
> BS14068.complete
GAAGTTATCAGTCGACATGGGAACCGGCAGCAAGAACTACCAGGCTCCGG
AATGGCTCACCGCCGAATTCCTGCAGGATGTGCTGAAGGAACACTTCAAG
GAAGAGCAGCTGGCAGTCACCGAGTTGATAGTAAAGAGCGCCCAAGTGGG
CGACCAGGCGGCGGGATTTGCCAGCGAAATGCATCGGGCCAGTTTCAATC
TTCAGAGGGGCACTGCACCCAAAGGCAAGTTTTCAGTGATTGTGAAGGAT
CATCCCAAGGGACAAACAGGTGCTGTGGCCCACAGGAGTAAGCTCTTCAA
GCGTGAGATTCTGGCTTACAAGGAGGTGCTTCCACGTATTCAAGCCTTGC
TCCAATCCATTGGAGATCAAACGAAAATTGCACCTACGTGCTACTACACC
ACGGAATCGCCGGAGCCATTCCTGATTCTGGAGGACATGCAGCTGTCCGG
CTTCGAGAACTTCGAACGCGGTCGACTGCTGAATCTGGACTACGTACTGC
CCACCATCGAGAAGGTCGCCAAGCTGCACGCTTGCAGCGCCCTTATCGCC
CAGGATAGCCCCGAGGTGCTGGAGTTCTTCGACGAGGCGCCCATTTCGAG
GAATCCGGACCGTCGTGACTTCCTCACCTTCTTCCCCGTCAACATTCGCT
GCGTGGCCGAGGAAGTGGCTCACTGGAAGGGCTACGAGGAGATCACCGAG
AAGATGTTCAACCTGGCCGAGAATGTCCTGCAAAGAGCGCTGACCATGTT
TGAGAGCACAGGCAAGGATTTCCGGGTCTTCAACCTCACCGATCTGTGGA
TCAACAATCTCTTGTTCCACATCAACAACGAGACCAAGGAGCCAGACGAT
GTGGTCACATTGGACTTTCAGTTGGCCTATGTGGGATCCCCAACCATTGA
TCTCAATTACTTCCTCTACGGATCCTTGAACGAGAATGTTCGTAAGGTCC
ACTATAAGTACATTGTGAGGGAATACCAGAGAGTGCTTCAGCAGACCCTG
GAGAAGCTAAACTACCAGGGACACATTCCAACTCTTAAAGAAATCCACAT
CGAGTTGATCAAGACCAGTCTTATGGGTGTCATTGGCGCCACTTGCCTGA
CTCCACTGATCTTCAGGGAGGGAGCTGGTTTCGAAAACCTTGAGGATCTG
AACTCACGCACTGAGAGCGGTGATCGTTTCCGCCGGGAAAATGTTGAAAA
CCCCAAGTATCGGGCTTTCCTTCAGCGAACTATTAAAGAATTCGAGCTAT
CTGGATTCTTGGATGAATAGAAGCTTTCTAGACCAT
BS14068.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:20:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31098-RA | 1254 | CG31098-PA | 1..1254 | 17..1270 | 6270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:20:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31098-RA | 1487 | CG31098-RA | 108..1361 | 17..1270 | 6270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:20:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25292028..25292870 | 859..17 | 4215 | 100 | Minus |
3R | 32079331 | 3R | 25291746..25291964 | 1078..860 | 1095 | 100 | Minus |
3R | 32079331 | 3R | 25291496..25291695 | 1270..1071 | 985 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:20:29 has no hits.
BS14068.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:34 Download gff for
BS14068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31098-RA | 102..1355 | 17..1270 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:51 Download gff for
BS14068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31098-RA | 108..1361 | 17..1270 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:51 Download gff for
BS14068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31098-RA | 102..1355 | 17..1270 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:17 Download gff for
BS14068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31098-RA | 108..1361 | 17..1270 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:17 Download gff for
BS14068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25291496..25291689 | 1077..1270 | 100 | <- | Minus |
3R | 25291748..25291964 | 860..1076 | 100 | <- | Minus |
3R | 25292028..25292870 | 17..859 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:51 Download gff for
BS14068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21117218..21117411 | 1077..1270 | 100 | <- | Minus |
arm_3R | 21117470..21117686 | 860..1076 | 100 | <- | Minus |
arm_3R | 21117750..21118592 | 17..859 | 100 | | Minus |
BS14068.3prime Sequence
622 bp (562 high quality bases) assembled on 2006-10-13
> BS14068.3prime
ATGGTCTAGAAAGCTTCTATTCATCCAAGAATCCAGATAGCTCGAATTCT
TTAATAGTTCGCTGAAGGAAAGCCCGATACTTGGGGTTTTCAACATTTTC
CCGGCGGAAACGATCACCGCTCTCAGTGCGTGAGTTCAGATCCTCAAGGT
TTTCGAAACCAGCTCCCTCCCTGAAGATCAGTGGAGTCAGGCAAGTGGCG
CCAATGACACCCATAAGACTGGTCTTGATCAACTCGATGTGGATTTCTTT
AAGAGTTGGAATGTGTCCCTGGTAGTTTAGCTTCTCCAGGGTCTGCTGAA
GCACTCTCTGGTATTCCCTCACAATGTACTTATAGTGGACCTTACGAACA
TTCTCGTTCAAGGATCCGTAGAGGAAGTAATTGAGATCAATGGTTGGGGA
TCCCACATAGGCCAACTGAAAGTCCAATGTGACCACATCGTCTGGCTCCT
TGGTCTCGTTGTTGATGTGGAACAAGAGATTGTTGATCCACAGATCGGTG
AGGTTGAAGACCCGGAAATCCTTGCCTGTGCTCTCAAACATGGTCAGCGC
TCTTTGCAGGACATTCTCGGCCAGGTTGAACATCTTCTCGGTGATCTCCT
CGTAGCCCTTTCCAGGAGCCAC
BS14068.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:24:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31098-PA | 1254 | CG31098-RA | 661..1254 | 610..17 | 2970 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:26:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31098-RA | 1487 | CG31098-RA | 756..1361 | 622..17 | 2985 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:25:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25291746..25291964 | 209..427 | 1095 | 100 | Plus |
3R | 32079331 | 3R | 25291496..25291695 | 17..216 | 985 | 99.5 | Plus |
3R | 32079331 | 3R | 25292028..25292210 | 428..610 | 915 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:25:58 has no hits.
BS14068.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:23 Download gff for
BS14068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31098-PA | 649..1254 | 17..622 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:08:43 Download gff for
BS14068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31098-RA | 756..1361 | 17..622 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:12:12 Download gff for
BS14068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31098-RA | 756..1361 | 17..622 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:12:12 Download gff for
BS14068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25292028..25292222 | 428..622 | 98 | | Plus |
3R | 25291748..25291964 | 211..427 | 100 | <- | Plus |
3R | 25291496..25291689 | 17..210 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:08:43 Download gff for
BS14068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21117218..21117411 | 17..210 | 100 | <- | Plus |
arm_3R | 21117470..21117686 | 211..427 | 100 | <- | Plus |
arm_3R | 21117750..21117944 | 428..622 | 98 | | Plus |
BS14068.5prime Sequence
654 bp (548 high quality bases) assembled on 2006-10-13
> BS14068.5prime
GAAGTTATCAGTCGACATGGGAACCGGCAGCAAGAACTACCAGGCTCCGG
AATGGCTCACCGCCGAATTCCTGCAGGATGTGCTGAAGGAACACTTCAAG
GAAGAGCAGCTGGCAGTCACCGAGTTGATAGTAAAGAGCGCCCAAGTGGG
CGACCAGGCGGCGGGATTTGCCAGCGAAATGCATCGGGCCAGTTTCAATC
TTCAGAGGGGCACTGCACCCAAAGGCAAGTTTTCAGTGATTGTGAAGGAT
CATCCCAAGGGACAAACAGGTGCTGTGGCCCACAGGAGTAAGCTCTTCAA
GCGTGAGATTCTGGCTTACAAGGAGGTGCTTCCACGTATTCAAGCCTTGC
TCCAATCCATTGGAGATCAAACGAAAATTGCACCTACGTGCTACTACACC
ACGGAATCGCCGGAGCCATTCCTGATTCTGGAGGACATGCAGCTGTCCGG
CTTCGAGAACTTCGAACGCGGTCGACTGCTGAATCTGGACTACGTACTGC
CCACCATCGAGAAGGTCGCCAAGCTGCACGCTTGCAGCGCCCTTATCGCC
CAGGATAGCCCCGAGGTGCTGGAGTTCTTCGACGAGGCGCCCATTTCGAG
GAATCCGGACCGTCGTGACTTCCTCACCTTCTTCCCCGTCAACATTCGCT
GCGT
BS14068.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:25:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31098-PA | 1254 | CG31098-RA | 1..638 | 17..654 | 3190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:49:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31098-RA | 1487 | CG31098-RA | 108..745 | 17..654 | 3190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:49:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25292233..25292870 | 654..17 | 3190 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:49:09 has no hits.
BS14068.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:24 Download gff for
BS14068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31098-PA | 1..638 | 17..654 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:08:44 Download gff for
BS14068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31098-RA | 108..745 | 17..654 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:36:20 Download gff for
BS14068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31098-RA | 108..745 | 17..654 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:36:20 Download gff for
BS14068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25292233..25292870 | 17..654 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:08:44 Download gff for
BS14068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21117955..21118592 | 17..654 | 100 | | Minus |
BS14068.pep Sequence
Translation from 16 to 1269
> BS14068.pep
MGTGSKNYQAPEWLTAEFLQDVLKEHFKEEQLAVTELIVKSAQVGDQAAG
FASEMHRASFNLQRGTAPKGKFSVIVKDHPKGQTGAVAHRSKLFKREILA
YKEVLPRIQALLQSIGDQTKIAPTCYYTTESPEPFLILEDMQLSGFENFE
RGRLLNLDYVLPTIEKVAKLHACSALIAQDSPEVLEFFDEAPISRNPDRR
DFLTFFPVNIRCVAEEVAHWKGYEEITEKMFNLAENVLQRALTMFESTGK
DFRVFNLTDLWINNLLFHINNETKEPDDVVTLDFQLAYVGSPTIDLNYFL
YGSLNENVRKVHYKYIVREYQRVLQQTLEKLNYQGHIPTLKEIHIELIKT
SLMGVIGATCLTPLIFREGAGFENLEDLNSRTESGDRFRRENVENPKYRA
FLQRTIKEFELSGFLDE*
BS14068.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:54:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31098-PA | 417 | CG31098-PA | 1..417 | 1..417 | 2159 | 100 | Plus |
CG11892-PA | 439 | CG11892-PA | 33..436 | 10..416 | 442 | 30.2 | Plus |
CG11892-PB | 439 | CG11892-PB | 33..436 | 10..416 | 442 | 30.2 | Plus |
CG10514-PA | 413 | CG10514-PA | 4..408 | 10..416 | 426 | 28 | Plus |
CG13360-PA | 421 | CG13360-PA | 12..421 | 8..416 | 389 | 24.3 | Plus |