Clone BS14068 Report

Search the DGRC for BS14068

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:140
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG31098-RA
Protein status:BS14068.pep: full length peptide match
Sequenced Size:1286

Clone Sequence Records

BS14068.complete Sequence

1286 bp assembled on 2009-12-07

GenBank Submission: KX802288

> BS14068.complete
GAAGTTATCAGTCGACATGGGAACCGGCAGCAAGAACTACCAGGCTCCGG
AATGGCTCACCGCCGAATTCCTGCAGGATGTGCTGAAGGAACACTTCAAG
GAAGAGCAGCTGGCAGTCACCGAGTTGATAGTAAAGAGCGCCCAAGTGGG
CGACCAGGCGGCGGGATTTGCCAGCGAAATGCATCGGGCCAGTTTCAATC
TTCAGAGGGGCACTGCACCCAAAGGCAAGTTTTCAGTGATTGTGAAGGAT
CATCCCAAGGGACAAACAGGTGCTGTGGCCCACAGGAGTAAGCTCTTCAA
GCGTGAGATTCTGGCTTACAAGGAGGTGCTTCCACGTATTCAAGCCTTGC
TCCAATCCATTGGAGATCAAACGAAAATTGCACCTACGTGCTACTACACC
ACGGAATCGCCGGAGCCATTCCTGATTCTGGAGGACATGCAGCTGTCCGG
CTTCGAGAACTTCGAACGCGGTCGACTGCTGAATCTGGACTACGTACTGC
CCACCATCGAGAAGGTCGCCAAGCTGCACGCTTGCAGCGCCCTTATCGCC
CAGGATAGCCCCGAGGTGCTGGAGTTCTTCGACGAGGCGCCCATTTCGAG
GAATCCGGACCGTCGTGACTTCCTCACCTTCTTCCCCGTCAACATTCGCT
GCGTGGCCGAGGAAGTGGCTCACTGGAAGGGCTACGAGGAGATCACCGAG
AAGATGTTCAACCTGGCCGAGAATGTCCTGCAAAGAGCGCTGACCATGTT
TGAGAGCACAGGCAAGGATTTCCGGGTCTTCAACCTCACCGATCTGTGGA
TCAACAATCTCTTGTTCCACATCAACAACGAGACCAAGGAGCCAGACGAT
GTGGTCACATTGGACTTTCAGTTGGCCTATGTGGGATCCCCAACCATTGA
TCTCAATTACTTCCTCTACGGATCCTTGAACGAGAATGTTCGTAAGGTCC
ACTATAAGTACATTGTGAGGGAATACCAGAGAGTGCTTCAGCAGACCCTG
GAGAAGCTAAACTACCAGGGACACATTCCAACTCTTAAAGAAATCCACAT
CGAGTTGATCAAGACCAGTCTTATGGGTGTCATTGGCGCCACTTGCCTGA
CTCCACTGATCTTCAGGGAGGGAGCTGGTTTCGAAAACCTTGAGGATCTG
AACTCACGCACTGAGAGCGGTGATCGTTTCCGCCGGGAAAATGTTGAAAA
CCCCAAGTATCGGGCTTTCCTTCAGCGAACTATTAAAGAATTCGAGCTAT
CTGGATTCTTGGATGAATAGAAGCTTTCTAGACCAT

BS14068.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:20:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG31098-RA 1254 CG31098-PA 1..1254 17..1270 6270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG31098-RA 1487 CG31098-RA 108..1361 17..1270 6270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:20:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25292028..25292870 859..17 4215 100 Minus
3R 32079331 3R 25291746..25291964 1078..860 1095 100 Minus
3R 32079331 3R 25291496..25291695 1270..1071 985 99.5 Minus
Blast to na_te.dros performed on 2014-11-28 02:20:29 has no hits.

BS14068.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:34 Download gff for BS14068.complete
Subject Subject Range Query Range Percent Splice Strand
CG31098-RA 102..1355 17..1270 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:51 Download gff for BS14068.complete
Subject Subject Range Query Range Percent Splice Strand
CG31098-RA 108..1361 17..1270 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:51 Download gff for BS14068.complete
Subject Subject Range Query Range Percent Splice Strand
CG31098-RA 102..1355 17..1270 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:17 Download gff for BS14068.complete
Subject Subject Range Query Range Percent Splice Strand
CG31098-RA 108..1361 17..1270 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:17 Download gff for BS14068.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25291496..25291689 1077..1270 100 <- Minus
3R 25291748..25291964 860..1076 100 <- Minus
3R 25292028..25292870 17..859 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:51 Download gff for BS14068.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21117218..21117411 1077..1270 100 <- Minus
arm_3R 21117470..21117686 860..1076 100 <- Minus
arm_3R 21117750..21118592 17..859 100   Minus

BS14068.3prime Sequence

622 bp (562 high quality bases) assembled on 2006-10-13

> BS14068.3prime
ATGGTCTAGAAAGCTTCTATTCATCCAAGAATCCAGATAGCTCGAATTCT
TTAATAGTTCGCTGAAGGAAAGCCCGATACTTGGGGTTTTCAACATTTTC
CCGGCGGAAACGATCACCGCTCTCAGTGCGTGAGTTCAGATCCTCAAGGT
TTTCGAAACCAGCTCCCTCCCTGAAGATCAGTGGAGTCAGGCAAGTGGCG
CCAATGACACCCATAAGACTGGTCTTGATCAACTCGATGTGGATTTCTTT
AAGAGTTGGAATGTGTCCCTGGTAGTTTAGCTTCTCCAGGGTCTGCTGAA
GCACTCTCTGGTATTCCCTCACAATGTACTTATAGTGGACCTTACGAACA
TTCTCGTTCAAGGATCCGTAGAGGAAGTAATTGAGATCAATGGTTGGGGA
TCCCACATAGGCCAACTGAAAGTCCAATGTGACCACATCGTCTGGCTCCT
TGGTCTCGTTGTTGATGTGGAACAAGAGATTGTTGATCCACAGATCGGTG
AGGTTGAAGACCCGGAAATCCTTGCCTGTGCTCTCAAACATGGTCAGCGC
TCTTTGCAGGACATTCTCGGCCAGGTTGAACATCTTCTCGGTGATCTCCT
CGTAGCCCTTTCCAGGAGCCAC

BS14068.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG31098-PA 1254 CG31098-RA 661..1254 610..17 2970 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:26:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG31098-RA 1487 CG31098-RA 756..1361 622..17 2985 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25291746..25291964 209..427 1095 100 Plus
3R 32079331 3R 25291496..25291695 17..216 985 99.5 Plus
3R 32079331 3R 25292028..25292210 428..610 915 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:25:58 has no hits.

BS14068.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:23 Download gff for BS14068.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31098-PA 649..1254 17..622 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:08:43 Download gff for BS14068.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31098-RA 756..1361 17..622 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:12:12 Download gff for BS14068.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31098-RA 756..1361 17..622 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:12:12 Download gff for BS14068.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25292028..25292222 428..622 98   Plus
3R 25291748..25291964 211..427 100 <- Plus
3R 25291496..25291689 17..210 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:08:43 Download gff for BS14068.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21117218..21117411 17..210 100 <- Plus
arm_3R 21117470..21117686 211..427 100 <- Plus
arm_3R 21117750..21117944 428..622 98   Plus

BS14068.5prime Sequence

654 bp (548 high quality bases) assembled on 2006-10-13

> BS14068.5prime
GAAGTTATCAGTCGACATGGGAACCGGCAGCAAGAACTACCAGGCTCCGG
AATGGCTCACCGCCGAATTCCTGCAGGATGTGCTGAAGGAACACTTCAAG
GAAGAGCAGCTGGCAGTCACCGAGTTGATAGTAAAGAGCGCCCAAGTGGG
CGACCAGGCGGCGGGATTTGCCAGCGAAATGCATCGGGCCAGTTTCAATC
TTCAGAGGGGCACTGCACCCAAAGGCAAGTTTTCAGTGATTGTGAAGGAT
CATCCCAAGGGACAAACAGGTGCTGTGGCCCACAGGAGTAAGCTCTTCAA
GCGTGAGATTCTGGCTTACAAGGAGGTGCTTCCACGTATTCAAGCCTTGC
TCCAATCCATTGGAGATCAAACGAAAATTGCACCTACGTGCTACTACACC
ACGGAATCGCCGGAGCCATTCCTGATTCTGGAGGACATGCAGCTGTCCGG
CTTCGAGAACTTCGAACGCGGTCGACTGCTGAATCTGGACTACGTACTGC
CCACCATCGAGAAGGTCGCCAAGCTGCACGCTTGCAGCGCCCTTATCGCC
CAGGATAGCCCCGAGGTGCTGGAGTTCTTCGACGAGGCGCCCATTTCGAG
GAATCCGGACCGTCGTGACTTCCTCACCTTCTTCCCCGTCAACATTCGCT
GCGT

BS14068.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG31098-PA 1254 CG31098-RA 1..638 17..654 3190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:49:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG31098-RA 1487 CG31098-RA 108..745 17..654 3190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25292233..25292870 654..17 3190 100 Minus
Blast to na_te.dros performed on 2015-02-12 16:49:09 has no hits.

BS14068.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:24 Download gff for BS14068.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31098-PA 1..638 17..654 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:08:44 Download gff for BS14068.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31098-RA 108..745 17..654 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:36:20 Download gff for BS14068.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31098-RA 108..745 17..654 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:36:20 Download gff for BS14068.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25292233..25292870 17..654 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:08:44 Download gff for BS14068.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21117955..21118592 17..654 100   Minus

BS14068.pep Sequence

Translation from 16 to 1269

> BS14068.pep
MGTGSKNYQAPEWLTAEFLQDVLKEHFKEEQLAVTELIVKSAQVGDQAAG
FASEMHRASFNLQRGTAPKGKFSVIVKDHPKGQTGAVAHRSKLFKREILA
YKEVLPRIQALLQSIGDQTKIAPTCYYTTESPEPFLILEDMQLSGFENFE
RGRLLNLDYVLPTIEKVAKLHACSALIAQDSPEVLEFFDEAPISRNPDRR
DFLTFFPVNIRCVAEEVAHWKGYEEITEKMFNLAENVLQRALTMFESTGK
DFRVFNLTDLWINNLLFHINNETKEPDDVVTLDFQLAYVGSPTIDLNYFL
YGSLNENVRKVHYKYIVREYQRVLQQTLEKLNYQGHIPTLKEIHIELIKT
SLMGVIGATCLTPLIFREGAGFENLEDLNSRTESGDRFRRENVENPKYRA
FLQRTIKEFELSGFLDE*

BS14068.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG31098-PA 417 CG31098-PA 1..417 1..417 2159 100 Plus
CG11892-PA 439 CG11892-PA 33..436 10..416 442 30.2 Plus
CG11892-PB 439 CG11892-PB 33..436 10..416 442 30.2 Plus
CG10514-PA 413 CG10514-PA 4..408 10..416 426 28 Plus
CG13360-PA 421 CG13360-PA 12..421 8..416 389 24.3 Plus