Clone Sequence Records
BS14070.complete Sequence
1769 bp assembled on 2009-12-07
GenBank Submission: KX801013
> BS14070.complete
GAAGTTATCAGTCGACATGGCCAGTCGCCAAGCCGGTTTCGTCCTAGACG
CCAAGTCCATGGGTCTGAATCCGTCGAGACCTGCATCATCGCCACCGCCA
CCACCATCATCTGCCAGTCAAATGTGTCGGCAAGTGCAGCCAACCGGAAC
GAGTGCCTCGCATCCACATCAAGAATCGACGCTAAAAGCCTCATCTCCTG
ATCGGTGCACTGCCAGCACCGAGGCGATGTCCACCGAACATTACCGCTGT
CTGATCCAGAAGCTGCGGGATACCAACGGCGATGCTGGCGATATGAGCTT
TGAGCTGAACAGCATATTTCTGAAGCGGCTGGACGAGATTGACTGCCTAG
ATGAGCACGAGGGTGATGACATGCACACTTGCCAGTTGCGTCTGGTCACT
TTTCAGGAGTGGGTGGATTTCCTGCTCCACGTGAACAGCGTGATCCTGGG
CAACGTGTCGGACTTGGAGAAGGAGGCGTACAGCAAGATCGTTGCCTGCT
GTCAGTCTGTCCAAGTGCGACAACAGCATACCCTCGAGGAGAATCGTAGG
CTGCGTGAGGACATTTGTGCGATCATAGAACGCGTGCAGCATTCTCCTCA
CTGCACCGACTTTGATTTCAATGGCATTTCCCTAGAGACACTGACCGTTA
ATCAATTGCGGGGCGTGGGAAAGGATCCCGCCCACGCGGAATGCGAGAGC
GAGAAGATGTCCGAGAGCATGAAGTCCTTAGTCGGCGAGATAGCCGCCAA
GCATGACGAGATCGGCGAACTGAAGTCACAGATCAATGCCTTGGACGAGG
TTGTACACACGGCCAGGCAGAAGTTACTTTTGAAGGATCAGTGCATAGCA
CAGCTCAATCAACAGCTGCACGAGATCACCCGGTGCATTGAGTCCAGAGA
TCAGGCCAAAATGGAGGAATCGCCCAACGATACACTGACCGCGGACGCGA
TTACAAGCGATATGCTCGAGAATCTCTCGATCCACGACACCCAGGAGAGC
GAAATGCTGCGGCTGCTAAACGCGGAGCTCAATGATCTTCTCGATCTGCA
CAACAAACAGGAGTTCCAGACCATTGAGATTCGGCGAAAACGTGTGTCCT
GCTTTATCGAAAAACTGGTATCCGAGCGTGAGGACACTCTGAAAAAACTC
GAGAGCATTCGTAGTCATCTGACAATCCTTCAGTCAGACCTCGATCAATC
CTGCCTAATCTCCGTTGATCCCGAATCAGGGCCCTGTGATCTGGACGCGG
ATGCTCAGATGCTGGAAGCTCTACGTAGACGCCTGCTCAACCTTAGCCAA
CTTAATCGAGAACTGCACGGAAAGTACCAGCGCCTGGACACCGAGTCGAA
AATCAAAATTTCAGAGCTGGAGGCGAGGATTGAATCGGAAAGCAGCGTTC
TTCAAAGAAATAGCGATGTTCTAAGGGAGATCGCCGAACTCATCTGCTCG
TTGGGTTCCAAGGAGTTCTCCTACAACGAAATCTACGACGAATCCTCGAA
AGAAAATCCATTTTGTACGACCATTGCGGATATGTTTGCACGGAAATTCG
AGCAGGAGCAAAATCAAGTGGAAATTGAATGCGATACGAAAACACCTTCC
CAAACAAGGAAGCCAACCAAAACCACCAAAATCCCGGGAGCCACGGCAAA
AACAAACAAACAACAACCAACACCTAAACCTTCAAACAAGCCAACGACAA
CTAAAACTATACCAACGAAAAACACAACTACAACGTTTAGGACCTCCAAG
TAAAAGCTTTCTAGACCAT
BS14070.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:08:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yuri-RC | 1737 | CG31732-PC | 1..1737 | 17..1753 | 8685 | 100 | Plus |
yuri-RD | 1695 | CG31732-PD | 1..1695 | 59..1753 | 8475 | 100 | Plus |
yuri-RQ | 2946 | CG31732-PQ | 1..1560 | 17..1576 | 7800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:08:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yuri-RC | 2555 | CG31732-RC | 566..2303 | 16..1753 | 8690 | 100 | Plus |
yuri-RD | 2500 | CG31732-RD | 542..2248 | 47..1753 | 8535 | 100 | Plus |
yuri-RQ | 3658 | CG31732-RQ | 566..2126 | 16..1576 | 7805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:08:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15263770..15264127 | 373..16 | 1790 | 100 | Minus |
2L | 23513712 | 2L | 15263332..15263665 | 706..373 | 1670 | 100 | Minus |
2L | 23513712 | 2L | 15262373..15262631 | 1119..861 | 1295 | 100 | Minus |
2L | 23513712 | 2L | 15262070..15262305 | 1352..1117 | 1180 | 100 | Minus |
2L | 23513712 | 2L | 15261461..15261637 | 1753..1577 | 885 | 100 | Minus |
2L | 23513712 | 2L | 15262970..15263130 | 865..705 | 805 | 100 | Minus |
2L | 23513712 | 2L | 15261717..15261841 | 1577..1453 | 625 | 100 | Minus |
2L | 23513712 | 2L | 15261911..15262016 | 1454..1349 | 515 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:08:12 has no hits.
BS14070.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:03 Download gff for
BS14070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yuri-RC | 565..2299 | 17..1751 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:50 Download gff for
BS14070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yuri-RC | 567..2301 | 17..1751 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:47 Download gff for
BS14070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yuri-RC | 565..2299 | 17..1751 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:47 Download gff for
BS14070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yuri-RC | 567..2301 | 17..1751 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:47 Download gff for
BS14070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15261463..15261637 | 1577..1751 | 100 | <- | Minus |
2L | 15261718..15261840 | 1454..1576 | 100 | <- | Minus |
2L | 15261912..15262012 | 1353..1453 | 100 | <- | Minus |
2L | 15262070..15262304 | 1118..1352 | 100 | <- | Minus |
2L | 15262375..15262626 | 866..1117 | 100 | <- | Minus |
2L | 15262970..15263128 | 707..865 | 100 | <- | Minus |
2L | 15263332..15263664 | 374..706 | 100 | <- | Minus |
2L | 15263770..15264126 | 17..373 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:50 Download gff for
BS14070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15261718..15261840 | 1454..1576 | 100 | <- | Minus |
arm_2L | 15261912..15262012 | 1353..1453 | 100 | <- | Minus |
arm_2L | 15262070..15262304 | 1118..1352 | 100 | <- | Minus |
arm_2L | 15262375..15262626 | 866..1117 | 100 | <- | Minus |
arm_2L | 15262970..15263128 | 707..865 | 100 | <- | Minus |
arm_2L | 15261463..15261637 | 1577..1751 | 100 | <- | Minus |
arm_2L | 15263332..15263664 | 374..706 | 100 | <- | Minus |
arm_2L | 15263770..15264126 | 17..373 | 100 | | Minus |
BS14070.3prime Sequence
588 bp (481 high quality bases) assembled on 2006-10-13
> BS14070.3prime
ATGGTCTAGAAAGCTTTTACTTGGAGGTCCTAAACGTTGTAGTTGTGTTT
TTCGTTGGTATAGTTTTAGTTGTCGTTGGCTTGTTTGAAGGTTTAGGTGT
TGGTTGTTGTTTGTTTGTTTTTGCCGTGGCTCCCGGGATTTTGGTGGTTT
TGGTTGGCTTCCTTGTTTGGGAAGGTGTTTTCGTATCGCATTCAATTTCC
ACTTGATTTTGCTCCTGCTCGAATTTCCGTGCAAACATATCCGCAATGGT
CGTACAAAATGGATTTTCTTTCGAGGATTCGTCGTAGATTTCGTTGTAGG
AGAACTCCTTGGAACCCAACGAGCAGATGAGTTCGGCGATCTCCCTTAGA
ACATCGCTATTTCTTTGAAGAACGCTGCTTTCCGATTCAATCCTCGCCTC
CAGCTCTGAAATTTTGATTTTCGACTCGGTGTCCAGGCGCTGGTACTTTC
CGTGCAGTTCTCGATTAAGTTGGCTAAGGTTGAGCANGCGTCTACGTAGA
GCTTCCAGCATCTGAGCATCCGCGTCCAGATCACAGGGCCCTGATTCGGG
ATCAACGGAAATTAGGCAGGATTGATCGAGGTCTGACT
BS14070.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:25:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31732-PC | 1737 | yuri-RC | 1166..1737 | 588..17 | 2816 | 99.6 | Minus |
CG31732-PD | 1695 | yuri-RD | 1124..1695 | 588..17 | 2816 | 99.6 | Minus |
CG31732-PH | 1047 | yuri-RH | 476..1047 | 588..17 | 2816 | 99.6 | Minus |
CG31732-PB | 2673 | yuri-RB | 1166..1560 | 588..194 | 1931 | 99.4 | Minus |
CG31732-PE | 1779 | yuri-RE | 272..666 | 588..194 | 1931 | 99.4 | Minus |
CG31732-PF | 1983 | yuri-RF | 476..870 | 588..194 | 1931 | 99.4 | Minus |
CG31732-PG | 2217 | yuri-RG | 272..666 | 588..194 | 1931 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:03:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yuri-RD | 2500 | CG31732-RD | 1677..2248 | 588..17 | 2834 | 99.7 | Minus |
yuri-RC | 2555 | CG31732-RC | 1732..2303 | 588..17 | 2834 | 99.7 | Minus |
yuri-RQ | 3658 | CG31732-RQ | 1732..2126 | 588..194 | 1949 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:03:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15261461..15261637 | 17..193 | 885 | 100 | Plus |
2L | 23513712 | 2L | 15262070..15262240 | 418..588 | 829 | 98.8 | Plus |
2L | 23513712 | 2L | 15261717..15261841 | 193..317 | 625 | 100 | Plus |
2L | 23513712 | 2L | 15261911..15262016 | 316..421 | 515 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-11 19:03:18 has no hits.
BS14070.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:25 Download gff for
BS14070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31732-PH | 476..1047 | 17..588 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:09:20 Download gff for
BS14070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yuri-RC | 1732..2305 | 12..588 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:58:22 Download gff for
BS14070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yuri-RC | 1732..2305 | 12..588 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:58:22 Download gff for
BS14070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15262070..15262240 | 418..588 | 98 | | Plus |
2L | 15261459..15261637 | 12..193 | 98 | <- | Plus |
2L | 15261718..15261840 | 194..316 | 100 | <- | Plus |
2L | 15261912..15262012 | 317..417 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:09:20 Download gff for
BS14070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15261459..15261637 | 12..193 | 98 | <- | Plus |
arm_2L | 15261718..15261840 | 194..316 | 100 | <- | Plus |
arm_2L | 15261912..15262012 | 317..417 | 100 | <- | Plus |
arm_2L | 15262070..15262240 | 418..588 | 98 | | Plus |
BS14070.5prime Sequence
595 bp (507 high quality bases) assembled on 2006-10-13
> BS14070.5prime
GAAGTTATCAGTCGACATGGCCAGTCGCCAAGCCGGTTTCGTCCTAGACG
CCAAGTCCATGGGTCTGAATCCGTCGAGACCTGCATCATCGCCACCGCCA
CCACCATCATCTGCCAGTCAAATGTGTCGGCAAGTGCAGCCAACCGGAAC
GAGTGCCTCGCATCCACATCAAGAATCGACGCTAAAAGCCTCATCTCCTG
ATCGGTGCACTGCCAGCACCGAGGCGATGTCCACCGAACATTACCGCTGT
CTGATCCAGAAGCTGCGGGATACCAACGGCGATGCTGGCGATATGAGCTT
TGAGCTGAACAGCATATTTCTGAAGCGGCTGGACGAGATTGACTGCCTAG
ATGAGCACGAGGGTGATGACATGCACACTTGCCAGTTGCGTCTGGTCACT
TTTCAGGAGTGGGTGGATTTCCTGCTCCACGTGAACAGCGTGATCCTGGG
CAACGTGTCGGACTTGGAGAAGGAGGCGTACAGCAAGATCGTTGCCTGCT
GTCAGTCTGTCCAAGTGCGACAACAGCATACCCTCGAGGAGAATCGTANG
CTGCGTGAGGACATTTGTGCGATCATAGAACGCGTGCAGCATTCT
BS14070.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:25:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31732-PB | 2673 | yuri-RB | 1..579 | 17..595 | 2876 | 99.8 | Plus |
CG31732-PC | 1737 | yuri-RC | 1..579 | 17..595 | 2876 | 99.8 | Plus |
CG31732-PD | 1695 | yuri-RD | 1..537 | 59..595 | 2666 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:56:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yuri-RQ | 3658 | CG31732-RQ | 566..1145 | 16..595 | 2889 | 99.8 | Plus |
yuri-RI | 956 | CG31732-RI | 101..680 | 16..595 | 2889 | 99.8 | Plus |
yuri-RC | 2555 | CG31732-RC | 566..1145 | 16..595 | 2889 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:56:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15263770..15264127 | 373..16 | 1790 | 100 | Minus |
2L | 23513712 | 2L | 15263443..15263665 | 595..373 | 1104 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:56:38 has no hits.
BS14070.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:25 Download gff for
BS14070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31732-PC | 1..579 | 17..595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:41:26 Download gff for
BS14070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yuri-RC | 566..1145 | 16..595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:01:42 Download gff for
BS14070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yuri-RC | 566..1145 | 16..595 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:01:42 Download gff for
BS14070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15263443..15263664 | 374..595 | 99 | <- | Minus |
2L | 15263770..15264127 | 16..373 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:41:26 Download gff for
BS14070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15263443..15263664 | 374..595 | 99 | <- | Minus |
arm_2L | 15263770..15264127 | 16..373 | 100 | | Minus |
BS14070.pep Sequence
Translation from 16 to 1752
> BS14070.pep
MASRQAGFVLDAKSMGLNPSRPASSPPPPPSSASQMCRQVQPTGTSASHP
HQESTLKASSPDRCTASTEAMSTEHYRCLIQKLRDTNGDAGDMSFELNSI
FLKRLDEIDCLDEHEGDDMHTCQLRLVTFQEWVDFLLHVNSVILGNVSDL
EKEAYSKIVACCQSVQVRQQHTLEENRRLREDICAIIERVQHSPHCTDFD
FNGISLETLTVNQLRGVGKDPAHAECESEKMSESMKSLVGEIAAKHDEIG
ELKSQINALDEVVHTARQKLLLKDQCIAQLNQQLHEITRCIESRDQAKME
ESPNDTLTADAITSDMLENLSIHDTQESEMLRLLNAELNDLLDLHNKQEF
QTIEIRRKRVSCFIEKLVSEREDTLKKLESIRSHLTILQSDLDQSCLISV
DPESGPCDLDADAQMLEALRRRLLNLSQLNRELHGKYQRLDTESKIKISE
LEARIESESSVLQRNSDVLREIAELICSLGSKEFSYNEIYDESSKENPFC
TTIADMFARKFEQEQNQVEIECDTKTPSQTRKPTKTTKIPGATAKTNKQQ
PTPKPSNKPTTTKTIPTKNTTTTFRTSK*
BS14070.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:06:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yuri-PC | 578 | CG31732-PC | 1..578 | 1..578 | 2966 | 100 | Plus |
yuri-PD | 564 | CG31732-PD | 1..564 | 15..578 | 2900 | 100 | Plus |
yuri-PQ | 981 | CG31732-PQ | 1..520 | 1..520 | 2657 | 100 | Plus |
yuri-PB | 890 | CG31732-PB | 1..520 | 1..520 | 2657 | 100 | Plus |
yuri-PI | 260 | CG31732-PI | 1..239 | 1..241 | 1217 | 96.7 | Plus |