Clone Sequence Records
BS14071.3prime Sequence
597 bp (597 high quality bases) assembled on 2006-10-13
> BS14071.3prime
ATGGTCTAGAAAGCTTCTATTTCGGGAGTGAGTCTGTGGGTGAATTCAGA
CCCGAGGATGTGTTATTCTCGTCCAGGGCATCTGGGAAACTGGACACCGA
ACCCGAGCGGGATGTCACCTTGGTTTTAACGTTCTCGTAGGCAGAGCCCA
CCGAAGCCTCGATAGAACGCATCGATTCGGAGTTTTTCATTTGCGACAGT
TTCGACGAAATGCCACTGGTGATGCTGCCAAACACCGAGGCGGTCTTCTC
GCCCGTGGACTTTAGCACCGACTCAGTGCGTTGGTATACAGTGCTCTCCT
TGAGGTTCTTAAGGCCCTGGTTCACGTCGTCCGTCACCTCCTTCCAGACG
GTGATGCCCAGCTTGCGCTTGAGATCGGAGGCATGGCGCGTCTTGGAGGC
TAGGACAGTTCGCAGCGTATTGATCTCTTCCTCAACGCGGGCGAGCTCCT
GACTCCACTCAGCCCGACGCTGCTCCTTCTCCTCGACGGANAGCGCAGCG
AACTCGGCGGCAATTTCTGCGGATGCCACAGAATTAGCTGGAGATGCTGG
CTCCGACAGGTTGGCTGTATTATGGTCCTCCATGTCGACTGATAACT
BS14071.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5174-PH | 567 | CG5174-RH | 1..567 | 583..17 | 2816 | 99.8 | Minus |
| CG5174-PI | 606 | CG5174-RI | 50..606 | 573..17 | 2766 | 99.8 | Minus |
| CG5174-PG | 501 | CG5174-RG | 1..459 | 583..125 | 2276 | 99.7 | Minus |
| CG5174-PA | 627 | CG5174-RA | 1..303 | 583..281 | 1471 | 99.3 | Minus |
| CG5174-PJ | 561 | CG5174-RJ | 1..303 | 583..281 | 1471 | 99.3 | Minus |
| CG5174-PK | 300 | CG5174-RK | 1..296 | 583..288 | 1461 | 99.6 | Minus |
| CG5174-PB | 1068 | CG5174-RB | 452..744 | 573..281 | 1421 | 99.3 | Minus |
| CG5174-PA | 627 | CG5174-RA | 356..627 | 288..17 | 1360 | 100 | Minus |
| CG5174-PB | 1068 | CG5174-RB | 797..1068 | 288..17 | 1360 | 100 | Minus |
| CG5174-PJ | 561 | CG5174-RJ | 356..519 | 288..125 | 820 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:12:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5174-RH | 1472 | CG5174-RH | 132..699 | 583..16 | 2829 | 99.8 | Minus |
| CG5174-RM | 1514 | CG5174-RM | 184..741 | 573..16 | 2779 | 99.8 | Minus |
| CG5174-RG | 848 | CG5174-RG | 132..590 | 583..125 | 2284 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:12:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18424323..18424486 | 451..288 | 820 | 100 | Minus |
| 2R | 25286936 | 2R | 18424872..18425034 | 287..125 | 815 | 100 | Minus |
| 2R | 25286936 | 2R | 18424127..18424252 | 573..448 | 619 | 99.2 | Minus |
| 2R | 25286936 | 2R | 18425340..18425448 | 124..16 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:12:52 has no hits.
BS14071.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:26 Download gff for
BS14071.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5174-PH | 1..567 | 17..583 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:03:44 Download gff for
BS14071.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5174-RH | 132..703 | 9..583 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:25:33 Download gff for
BS14071.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5174-RH | 132..703 | 9..583 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:25:33 Download gff for
BS14071.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18424127..18424251 | 449..573 | 99 | -> | Minus |
| 2R | 18424326..18424486 | 288..448 | 100 | -> | Minus |
| 2R | 18424872..18425034 | 125..287 | 100 | -> | Minus |
| 2R | 18425340..18425452 | 9..124 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:03:44 Download gff for
BS14071.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14311632..14311756 | 449..573 | 99 | -> | Minus |
| arm_2R | 14311831..14311991 | 288..448 | 100 | -> | Minus |
| arm_2R | 14312377..14312539 | 125..287 | 100 | -> | Minus |
| arm_2R | 14312845..14312957 | 9..124 | 97 | | Minus |
BS14071.5prime Sequence
597 bp (596 high quality bases) assembled on 2006-10-13
> BS14071.5prime
GAAGTTATCAGTCGACATGGAGGACCATAATACAGCCAACCTGTCGGAGC
CAGCATCTCCAGCTAATTCTGTGGCATCCGCAGAAATTGCCGCCGAGTTC
GCTGCGCTTTCCGTCGAGGAGAAGGAGCAGCGTCGGGCTGAGTGGAGTCA
GGAGCTCGCCCGCGTTGAGGAAGAGATCAATACGCTGCGAACTGTCCTAG
CCTCCAAGACGCGCCATGCCTCCGATCTCAAGCGCAAGCTGGGCATCACC
GTCTGGAAGGAGGTGACGGACGACGTGAACCAGGGCCTTAAGAACCTCAA
GGAGAGCACTGTATACCAACGCACTGAGTCGGTGCTAAAGTCCACGGGCG
AGAAGACCGCCTCGGTGTTTGGCAGCATCACCAGTGGCATTTCGTCGAAA
CTGTCGCAAATGAAAAACTCCGAATCGATGCGTTCTATCGAGGCTTCGGT
GGGCTCTGCCTACGAGAACGTTAAAACCAAGGTGACATCCCGCTCGGGTT
CGGTGTCCAGTTTCCCAGATGCCCTGGACGAGAATAACACATCCTCGGGT
CTGAATTCACCCACAGACTCACTCCCGAAATAGAAGCTTTCTAGACC
BS14071.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5174-PH | 567 | CG5174-RH | 1..567 | 17..583 | 2835 | 100 | Plus |
| CG5174-PI | 606 | CG5174-RI | 50..606 | 27..583 | 2785 | 100 | Plus |
| CG5174-PG | 501 | CG5174-RG | 1..459 | 17..475 | 2295 | 100 | Plus |
| CG5174-PA | 627 | CG5174-RA | 1..303 | 17..319 | 1490 | 99.6 | Plus |
| CG5174-PJ | 561 | CG5174-RJ | 1..303 | 17..319 | 1490 | 99.6 | Plus |
| CG5174-PK | 300 | CG5174-RK | 1..296 | 17..312 | 1480 | 100 | Plus |
| CG5174-PB | 1068 | CG5174-RB | 452..744 | 27..319 | 1440 | 99.6 | Plus |
| CG5174-PA | 627 | CG5174-RA | 356..627 | 312..583 | 1360 | 100 | Plus |
| CG5174-PB | 1068 | CG5174-RB | 797..1068 | 312..583 | 1360 | 100 | Plus |
| CG5174-PJ | 561 | CG5174-RJ | 356..519 | 312..475 | 820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:18:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5174-RH | 1472 | CG5174-RH | 132..699 | 17..584 | 2840 | 100 | Plus |
| CG5174-RM | 1514 | CG5174-RM | 184..741 | 27..584 | 2790 | 100 | Plus |
| CG5174-RG | 848 | CG5174-RG | 132..590 | 17..475 | 2295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:17:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18424323..18424486 | 149..312 | 820 | 100 | Plus |
| 2R | 25286936 | 2R | 18424872..18425034 | 313..475 | 815 | 100 | Plus |
| 2R | 25286936 | 2R | 18424127..18424252 | 27..152 | 630 | 100 | Plus |
| 2R | 25286936 | 2R | 18425340..18425448 | 476..584 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:18:02 has no hits.
BS14071.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:26 Download gff for
BS14071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5174-PH | 1..567 | 17..583 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:27:43 Download gff for
BS14071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5174-RH | 132..703 | 17..591 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:31 Download gff for
BS14071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5174-RH | 132..703 | 17..591 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:31 Download gff for
BS14071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18424127..18424251 | 27..151 | 100 | -> | Plus |
| 2R | 18424326..18424486 | 152..312 | 100 | -> | Plus |
| 2R | 18424872..18425034 | 313..475 | 100 | -> | Plus |
| 2R | 18425340..18425452 | 476..591 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:27:43 Download gff for
BS14071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14311632..14311756 | 27..151 | 100 | -> | Plus |
| arm_2R | 14311831..14311991 | 152..312 | 100 | -> | Plus |
| arm_2R | 14312377..14312539 | 313..475 | 100 | -> | Plus |
| arm_2R | 14312845..14312957 | 476..591 | 97 | | Plus |
BS14071.complete Sequence
599 bp assembled on 2006-11-01
GenBank Submission: FJ637594
> BS14071.complete
GAAGTTATCAGTCGACATGGAGGACCATAATACAGCCAACCTGTCGGAGC
CAGCATCTCCAGCTAATTCTGTGGCATCCGCAGAAATTGCCGCCGAGTTC
GCTGCGCTTTCCGTCGAGGAGAAGGAGCAGCGTCGGGCTGAGTGGAGTCA
GGAGCTCGCCCGCGTTGAGGAAGAGATCAATACGCTGCGAACTGTCCTAG
CCTCCAAGACGCGCCATGCCTCCGATCTCAAGCGCAAGCTGGGCATCACC
GTCTGGAAGGAGGTGACGGACGACGTGAACCAGGGCCTTAAGAACCTCAA
GGAGAGCACTGTATACCAACGCACTGAGTCGGTGCTAAAGTCCACGGGCG
AGAAGACCGCCTCGGTGTTTGGCAGCATCACCAGTGGCATTTCGTCGAAA
CTGTCGCAAATGAAAAACTCCGAATCGATGCGTTCTATCGAGGCTTCGGT
GGGCTCTGCCTACGAGAACGTTAAAACCAAGGTGACATCCCGCTCGGGTT
CGGTGTCCAGTTTCCCAGATGCCCTGGACGAGAATAACACATCCTCGGGT
CTGAATTCACCCACAGACTCACTCCCGAAATAGAAGCTTTCTAGACCAT
BS14071.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:02:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5174-RH | 567 | CG5174-PH | 1..567 | 17..583 | 2835 | 100 | Plus |
| CG5174-RM | 609 | CG5174-PM | 53..609 | 27..583 | 2785 | 100 | Plus |
| CG5174-RG | 501 | CG5174-PG | 1..459 | 17..475 | 2295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5174-RH | 1472 | CG5174-RH | 132..699 | 17..584 | 2840 | 100 | Plus |
| CG5174-RM | 1514 | CG5174-RM | 184..741 | 27..584 | 2790 | 100 | Plus |
| CG5174-RG | 848 | CG5174-RG | 132..590 | 17..475 | 2295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18424323..18424486 | 149..312 | 820 | 100 | Plus |
| 2R | 25286936 | 2R | 18424872..18425034 | 313..475 | 815 | 100 | Plus |
| 2R | 25286936 | 2R | 18424127..18424252 | 27..152 | 630 | 100 | Plus |
| 2R | 25286936 | 2R | 18425340..18425448 | 476..584 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:02:58 has no hits.
BS14071.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:01 Download gff for
BS14071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5174-RH | 1..567 | 17..583 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:16 Download gff for
BS14071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5174-RH | 135..706 | 17..591 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:55:07 Download gff for
BS14071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5174-RH | 132..692 | 17..577 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:01 Download gff for
BS14071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5174-RH | 135..706 | 17..591 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:09:58 Download gff for
BS14071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5174-RH | 132..692 | 17..577 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:09:58 Download gff for
BS14071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18424127..18424251 | 27..151 | 100 | -> | Plus |
| 2R | 18424326..18424486 | 152..312 | 100 | -> | Plus |
| 2R | 18424872..18425034 | 313..475 | 100 | -> | Plus |
| 2R | 18425340..18425441 | 476..577 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:55:07 Download gff for
BS14071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14311632..14311756 | 27..151 | 100 | -> | Plus |
| arm_2R | 14311831..14311991 | 152..312 | 100 | -> | Plus |
| arm_2R | 14312377..14312539 | 313..475 | 100 | -> | Plus |
| arm_2R | 14312845..14312946 | 476..577 | 100 | | Plus |
BS14071.pep Sequence
Translation from 16 to 582
> BS14071.pep
MEDHNTANLSEPASPANSVASAEIAAEFAALSVEEKEQRRAEWSQELARV
EEEINTLRTVLASKTRHASDLKRKLGITVWKEVTDDVNQGLKNLKESTVY
QRTESVLKSTGEKTASVFGSITSGISSKLSQMKNSESMRSIEASVGSAYE
NVKTKVTSRSGSVSSFPDALDENNTSSGLNSPTDSLPK*
BS14071.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5174-PH | 188 | CG5174-PH | 1..188 | 1..188 | 919 | 100 | Plus |
| CG5174-PM | 202 | CG5174-PM | 19..202 | 5..188 | 895 | 100 | Plus |
| CG5174-PA | 208 | CG5174-PA | 1..208 | 1..188 | 888 | 90.4 | Plus |
| CG5174-PL | 209 | CG5174-PL | 1..209 | 1..188 | 870 | 89.5 | Plus |
| CG5174-PN | 222 | CG5174-PN | 1..222 | 1..188 | 863 | 84.7 | Plus |
