Clone Sequence Records
BS14072.3prime Sequence
539 bp (477 high quality bases) assembled on 2006-10-13
> BS14072.3prime
ATGGTCTAGAAAGCTTTCAACTCGTCCTCTTAGGCTCGGCCTGGCCTATG
GTTCCATCCTGCTGTTGGGCCTCAATGGCGGCCAACGCAGCCTCGGACAT
CTTCTTGTACTTGCCGGCCAATTCGGGCAGTTCGTAGGCAATGGCCAGGT
CCAGTTTGGTGATCGGACAGCCGCGGAAGTAGGTGCAGGTGTCCCTCAGC
TTCTTGAACTCGTACAGCGGATTCAGGCGGAAGAAGTCGCGGTAGACTTC
CGGATCCGGAAGATCGTAGCGCGAGATGTTCGTCAGTGTGGAGAGTCCCT
CGTAGATGTGGTAGTTCTGCGGATGATCGATGATGTCATCGGCGATGCGC
TTCTTGTTGCCAAACAGCGTCTTGTGGTTGTTGAACGTGTTCAGGTAGCA
GTCCACCATCTTGGCGTGGTTGCGCACACGCACCGCAAAACGACGTGCGC
TGGCGATCTTGTGCTCGATGCGCTTGTCGATGGCTGTGCGCAGGTCGCGC
AAGAAGGCGCGCTCCTGGGCGAGCAGCAGGCGGGCGGGA
BS14072.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:25:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9297-PB | 2859 | CG9297-RB | 2337..2859 | 539..17 | 2615 | 100 | Minus |
| CG9297-PA | 2793 | CG9297-RA | 2271..2793 | 539..17 | 2615 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:24:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9297-RE | 4134 | CG9297-RE | 2621..3143 | 539..17 | 2615 | 100 | Minus |
| CG9297-RD | 4127 | CG9297-RD | 2614..3136 | 539..17 | 2615 | 100 | Minus |
| CG9297-RC | 4111 | CG9297-RC | 2598..3120 | 539..17 | 2615 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:23:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13777909..13778326 | 434..17 | 2090 | 100 | Minus |
| 3R | 32079331 | 3R | 13777603..13777711 | 539..431 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:23:58 has no hits.
BS14072.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:26 Download gff for
BS14072.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9297-PA | 2272..2793 | 17..538 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:44:01 Download gff for
BS14072.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9297-RC | 2599..3120 | 17..538 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:28:10 Download gff for
BS14072.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9297-RC | 2599..3120 | 17..538 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:28:10 Download gff for
BS14072.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13777604..13777708 | 434..538 | 100 | -> | Minus |
| 3R | 13777910..13778326 | 17..433 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:44:01 Download gff for
BS14072.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9603326..9603430 | 434..538 | 100 | -> | Minus |
| arm_3R | 9603632..9604048 | 17..433 | 100 | | Minus |
BS14072.5prime Sequence
496 bp (473 high quality bases) assembled on 2006-10-13
> BS14072.5prime
GAAGTTATCAGTCGACATGGGGCGGCTAACCATTTGGTTCCTACTGGGAC
TAACGTTAATCGCCGTTTCCAATAATGTTGGGTTTGTCAATGCCGATGTC
GGACCAAGCGAATCAGAATGTCGACCCTACATTGAAAAGGCTATTCATGA
ATTGAAAACAGATGGTGTCAGGGATGGATCTGGAGAACTGCAATCCGATC
AGCCACGTGGGGACGACGACGATGACGACGATGATGGTGGGCATTCTGCG
GTTGATGAGAAAGATACGATTGAAATTGAAACTGTCGAATTGGATTCCAC
AGAGGACGCGAAAAGTGCCAACGATTTGGATGGAGATGGAATACCCGATG
ACGAGGACGATGATATCGATGGGGACGGCATTCCGAACGAAAAGGACGAT
GATATCGATGGAGATGGCATACCGAACGACGAGGATGATGACATCGATGG
CGATGGCATCCCGAATGAAGATGACGACAATATTGATGGGGATGGT
BS14072.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:25:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9297-PB | 2859 | CG9297-RB | 1..480 | 17..496 | 2375 | 99.7 | Plus |
| CG9297-PA | 2793 | CG9297-RA | 1..220 | 17..236 | 1100 | 100 | Plus |
| CG9297-PA | 2793 | CG9297-RA | 220..414 | 302..496 | 950 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:24:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9297-RE | 4134 | CG9297-RE | 285..764 | 17..496 | 2385 | 99.8 | Plus |
| CG9297-RD | 4127 | CG9297-RD | 278..757 | 17..496 | 2385 | 99.8 | Plus |
| CG9297-RC | 4111 | CG9297-RC | 262..741 | 17..496 | 2385 | 99.8 | Plus |
| CG9297-RE | 4134 | CG9297-RE | 675..802 | 329..456 | 265 | 80.5 | Plus |
| CG9297-RD | 4127 | CG9297-RD | 668..795 | 329..456 | 265 | 80.5 | Plus |
| CG9297-RE | 4134 | CG9297-RE | 661..763 | 354..456 | 260 | 83.5 | Plus |
| CG9297-RD | 4127 | CG9297-RD | 654..756 | 354..456 | 260 | 83.5 | Plus |
| CG9297-RE | 4134 | CG9297-RE | 622..724 | 393..495 | 245 | 82.5 | Plus |
| CG9297-RD | 4127 | CG9297-RD | 615..717 | 393..495 | 245 | 82.5 | Plus |
| CG9297-RE | 4134 | CG9297-RE | 714..843 | 329..458 | 215 | 78.6 | Plus |
| CG9297-RD | 4127 | CG9297-RD | 707..836 | 329..458 | 215 | 78.6 | Plus |
| CG9297-RE | 4134 | CG9297-RE | 597..685 | 407..495 | 205 | 82 | Plus |
| CG9297-RD | 4127 | CG9297-RD | 590..678 | 407..495 | 205 | 82 | Plus |
| CG9297-RE | 4134 | CG9297-RE | 778..920 | 354..496 | 190 | 75.5 | Plus |
| CG9297-RD | 4127 | CG9297-RD | 771..913 | 354..496 | 190 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:24:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13774309..13774646 | 159..496 | 1675 | 99.7 | Plus |
| 3R | 32079331 | 3R | 13773934..13774018 | 77..161 | 425 | 100 | Plus |
| 3R | 32079331 | 3R | 13772350..13772410 | 17..77 | 305 | 100 | Plus |
| 3R | 32079331 | 3R | 13774557..13774684 | 329..456 | 265 | 80.5 | Plus |
| 3R | 32079331 | 3R | 13774543..13774645 | 354..456 | 260 | 83.5 | Plus |
| 3R | 32079331 | 3R | 13774504..13774606 | 393..495 | 245 | 82.5 | Plus |
| 3R | 32079331 | 3R | 13774596..13774725 | 329..458 | 215 | 77.7 | Plus |
| 3R | 32079331 | 3R | 13774479..13774567 | 407..495 | 205 | 82 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:24:11 has no hits.
BS14072.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:27 Download gff for
BS14072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9297-PB | 1..480 | 17..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:44:05 Download gff for
BS14072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9297-RC | 262..741 | 17..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:29:18 Download gff for
BS14072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9297-RC | 262..741 | 17..496 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:29:18 Download gff for
BS14072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13772350..13772410 | 17..77 | 100 | -> | Plus |
| 3R | 13773935..13774018 | 78..161 | 100 | -> | Plus |
| 3R | 13774312..13774646 | 162..496 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:44:05 Download gff for
BS14072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9598072..9598132 | 17..77 | 100 | -> | Plus |
| arm_3R | 9599657..9599740 | 78..161 | 100 | -> | Plus |
| arm_3R | 9600034..9600368 | 162..496 | 99 | | Plus |
BS14072.complete Sequence
2891 bp assembled on 2010-05-13
GenBank Submission: KX801184
> BS14072.complete
GAAGTTATCAGTCGACATGGGGCGGCTAACCATTTGGTTCCTACTGGGAC
TAACGTTAATCGCCGTTTCCAATAATGTTGGGTTTGTCAATGCCGATGTC
GGACCAAGCGAATCAGAATGTCGACCCTACATTGAAAAGGCTATTCATGA
ATTGAAAACAGATGGTGTCAGGGATGGATCTGGAGAACTGCAATCCGATC
AGCCACGTGGGGACGACGACGATGACGACGATGATGGTGGGCATTCTGCG
GTTGATGAGAAAGATACGATTGAAATTGAAACTGTCGAATTGGATTCCAC
AGAGGACGCGAAAAGTGCCAACGATTTGGATGGAGATGGAATACCCGATG
ACGAGGACGATGATATCGATGGGGACGGCATTCCGAACGAAAAGGACGAT
GATATCGATGGAGATGGCATACCGAACGACGAGGATGATGACATCGATGG
CGATGGCATCCCGAATGAAGATGACGACGATATTGATGGGGATGGTGTGC
CCAACTCCAAGGACGAGGACATCGATGGGGATGGTGTGCCCAACTCCAAG
GACGAAGACATCGATGGCGATGGCAAGGCAAATCACGAGGATGATGATCT
AGATGGTGATGGCACTCCAAATCATGAGGACGAAGATCTCGACGGGGACG
GTGTGCCCAACGAGGAAGATGATGACCTCGATGGTGATGGCAAAATAAAT
CACGAGGATGAAGACCTCGATGGTGATGGAGTGAAAAATGACGAAGACGA
GGATCTGGATGGAGATGGCAAAGTAAATCACGAGGACGAAGATCTTGATG
GAGATGGCGTGAAGAATGAAAAGGACGACGATTTGGATGGCGATGGTACC
AACAATTCTCAGGATGAAGACCTAGATGGTGATGGTGTGCCAAATGAAAA
GGATGACGATCTGGATGGAGATGGCATCCTGAACGAGCACGACGGTGATG
TGGATGGCGATGGAGTTCCCAATGAACACGATCACAAGGATAGCGGTGAG
AATGCCGATGATGATGATGACGACGATGATGAGGATGACAAGGAGGCGGT
CAAGAAGCGAAGCAAACGTGAAGTGGATGCTGCTCCTGTTCTGGACATTG
AGGCTCCACCAAGTCCCGCCGAAGAATTTCCCGTAGAGGAAGAAATCGTC
AAGGAGGCATCTGCCGAAGAGGAAGCCGAAGTTGAGGCTGTGAAAGAAGA
GGAGCCCGAGCAGGAAGCTGTTCAGGAACCCGAACCGGAACCGGTAGTGG
AACCAGAAGCGGAAGTGCAACCCGAACCAGTCCAGCAGGAAGAAGAGAAG
GCCGAATCTGCGGAAGCGAAGGAGGAGGAAAAGCCAGCACCAGTTGAGGA
GGCTGAGGCTGAGGAGGAATCTGTGCAGCCTGAAGCCGCTCCCAAAGAAC
CCGAAGCTGTCCAGGAGGAAGCACAGGAAGATGAACCACAAACCGATGGC
GCACAAGATGCCGCTGATGATGATGATGACACCAAGCCAGAGGATGAGCT
TCTTTGGGAAGGACACATTCCCGAGAACCGACGCAGTCGCCAGCACATCA
CCGAACTGCTCCAGTTGGATGAGGAGTTCAATGCCCGTGAGAAGGCTACC
GACAACGTTGCTGAGATCATCCTGCGGGACATTAAGCGCATCTACGAGAA
TGCTGTCAAGCCCCTGGAGACCCTGTACAAATATCGCGATCTGAGCAACC
GCCACTTCAGCGATCCCGAGATCTTCTCAAAGCCACTGATTCTATTCATG
GGTCCTTGGTCCGGCGGCAAGTCGTCCATTCTTAACTATCTGACCGACAA
TGAGTACACGCCGAACTCTTTGAGAACTGGTGCTGAACCCTCTCCGGCCT
ACTTCAACATTCTGATGTGGGGCAATGAGACGGAGGTTCTGGACGGCACT
CAACTGGCGGCGGACTACACCTTTGCCGGCCTCCAGAAGTTCGGTCAGGG
ATTGGAGGAGCGCCTGCGTGGTCTGAAGATGAAGAGCAAGATCCTCGAAA
AGGTCAACATCGTCGAGATACCCGGCATTCTAGAGGTGCGCAAGCAAGTG
TCCCGCGTCTTCCCCTTCAACGACGCCTGCCAGTGGTTCATCGATCGGGC
GGACATCATCTTCTTGGTCTACGACCCGGCCAAGTTGGATGTGGGCCCCG
AGACGGAGGCCATTCTCGACCAGCTGAAGGGGCGCGAGTACCAGACGCGC
ATCATCCTCAACAAGGCAGACACCGTCAAGCCCGAGGAGTTGTTGCGCGT
CCAGGGCGCCCTCATCTGGAACATCTCGCCATTGATGTCCTCCGCCCAGC
CGCCGCTGATGTACACCACCTCGCTGTGGACCCATCCCTACCAGGATGGT
GCTCCCGCCCGCCTGCTGCTCGCCCAGGAGCGCGCCTTCTTGCGCGACCT
GCGCACAGCCATCGACAAGCGCATCGAGCACAAGATCGCCAGCGCACGTC
GTTTTGCGGTGCGTGTGCGCAACCACGCCAAGATGGTGGACTGCTACCTG
AACACGTTCAACAACCACAAGACGCTGTTTGGCAACAAGAAGCGCATCGC
CGATGACATCATCGATCATCCGCAGAACTACCACATCTACGAGGGACTCT
CCACACTGACGAACATCTCGCGCTACGATCTTCCGGATCCGGAAGTCTAC
CGCGACTTCTTCCGCCTGAATCCGCTGTACGAGTTCAAGAAGCTGAGGGA
CACCTGCACCTACTTCCGCGGCTGTCCGATCACCAAACTGGACCTGGCCA
TTGCCTACGAACTGCCCGAATTGGCCGGCAAGTACAAGAAGATGTCCGAG
GCTGCGTTGGCCGCCATTGAGGCCCAACAGCAGGATGGAACCATAGGCCA
GGCCGAGCCTAAGAGGACGAGTTGAAAGCTTTCTAGACCAT
BS14072.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:15:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9297-RE | 2859 | CG9297-PE | 1..2859 | 17..2875 | 14295 | 100 | Plus |
| CG9297-RD | 2859 | CG9297-PD | 1..2859 | 17..2875 | 14295 | 100 | Plus |
| CG9297-RC | 2859 | CG9297-PC | 1..2859 | 17..2875 | 14295 | 100 | Plus |
| CG9297-RE | 2859 | CG9297-PE | 313..830 | 407..924 | 565 | 73.9 | Plus |
| CG9297-RE | 2859 | CG9297-PE | 391..908 | 329..846 | 565 | 73.9 | Plus |
| CG9297-RD | 2859 | CG9297-PD | 313..830 | 407..924 | 565 | 73.9 | Plus |
| CG9297-RD | 2859 | CG9297-PD | 391..908 | 329..846 | 565 | 73.9 | Plus |
| CG9297-RE | 2859 | CG9297-PE | 338..753 | 393..808 | 490 | 74.5 | Plus |
| CG9297-RE | 2859 | CG9297-PE | 377..792 | 354..769 | 490 | 74.5 | Plus |
| CG9297-RD | 2859 | CG9297-PD | 338..753 | 393..808 | 490 | 74.5 | Plus |
| CG9297-RD | 2859 | CG9297-PD | 377..792 | 354..769 | 490 | 74.5 | Plus |
| CG9297-RE | 2859 | CG9297-PE | 338..754 | 510..926 | 450 | 73.9 | Plus |
| CG9297-RE | 2859 | CG9297-PE | 494..910 | 354..770 | 450 | 73.9 | Plus |
| CG9297-RD | 2859 | CG9297-PD | 338..754 | 510..926 | 450 | 73.9 | Plus |
| CG9297-RD | 2859 | CG9297-PD | 494..910 | 354..770 | 450 | 73.9 | Plus |
| CG9297-RE | 2859 | CG9297-PE | 430..713 | 329..612 | 355 | 75 | Plus |
| CG9297-RE | 2859 | CG9297-PE | 313..596 | 446..729 | 355 | 75 | Plus |
| CG9297-RD | 2859 | CG9297-PD | 313..596 | 446..729 | 355 | 75 | Plus |
| CG9297-RD | 2859 | CG9297-PD | 430..713 | 329..612 | 355 | 75 | Plus |
| CG9297-RE | 2859 | CG9297-PE | 379..559 | 746..926 | 185 | 73.5 | Plus |
| CG9297-RE | 2859 | CG9297-PE | 730..910 | 395..575 | 185 | 73.5 | Plus |
| CG9297-RD | 2859 | CG9297-PD | 379..559 | 746..926 | 185 | 73.5 | Plus |
| CG9297-RD | 2859 | CG9297-PD | 730..910 | 395..575 | 185 | 73.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:15:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9297-RE | 4134 | CG9297-RE | 285..3143 | 17..2875 | 14295 | 100 | Plus |
| CG9297-RD | 4127 | CG9297-RD | 278..3136 | 17..2875 | 14295 | 100 | Plus |
| CG9297-RC | 4111 | CG9297-RC | 262..3120 | 17..2875 | 14295 | 100 | Plus |
| CG9297-RE | 4134 | CG9297-RE | 597..1114 | 407..924 | 565 | 73.9 | Plus |
| CG9297-RE | 4134 | CG9297-RE | 675..1192 | 329..846 | 565 | 73.9 | Plus |
| CG9297-RD | 4127 | CG9297-RD | 590..1107 | 407..924 | 565 | 73.9 | Plus |
| CG9297-RD | 4127 | CG9297-RD | 668..1185 | 329..846 | 565 | 73.9 | Plus |
| CG9297-RE | 4134 | CG9297-RE | 622..1037 | 393..808 | 490 | 74.5 | Plus |
| CG9297-RE | 4134 | CG9297-RE | 661..1076 | 354..769 | 490 | 74.5 | Plus |
| CG9297-RD | 4127 | CG9297-RD | 615..1030 | 393..808 | 490 | 74.5 | Plus |
| CG9297-RD | 4127 | CG9297-RD | 654..1069 | 354..769 | 490 | 74.5 | Plus |
| CG9297-RE | 4134 | CG9297-RE | 622..1038 | 510..926 | 450 | 73.9 | Plus |
| CG9297-RE | 4134 | CG9297-RE | 778..1194 | 354..770 | 450 | 73.9 | Plus |
| CG9297-RD | 4127 | CG9297-RD | 615..1031 | 510..926 | 450 | 73.9 | Plus |
| CG9297-RD | 4127 | CG9297-RD | 771..1187 | 354..770 | 450 | 73.9 | Plus |
| CG9297-RE | 4134 | CG9297-RE | 597..880 | 446..729 | 355 | 75 | Plus |
| CG9297-RE | 4134 | CG9297-RE | 714..997 | 329..612 | 355 | 75 | Plus |
| CG9297-RD | 4127 | CG9297-RD | 590..873 | 446..729 | 355 | 75 | Plus |
| CG9297-RD | 4127 | CG9297-RD | 707..990 | 329..612 | 355 | 75 | Plus |
| CG9297-RE | 4134 | CG9297-RE | 663..843 | 746..926 | 185 | 73.5 | Plus |
| CG9297-RE | 4134 | CG9297-RE | 1014..1194 | 395..575 | 185 | 73.5 | Plus |
| CG9297-RD | 4127 | CG9297-RD | 656..836 | 746..926 | 185 | 73.5 | Plus |
| CG9297-RD | 4127 | CG9297-RD | 1007..1187 | 395..575 | 185 | 73.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:15:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13775530..13776177 | 861..1508 | 3240 | 100 | Plus |
| 3R | 32079331 | 3R | 13777251..13777711 | 2001..2461 | 2305 | 100 | Plus |
| 3R | 32079331 | 3R | 13774309..13774737 | 159..587 | 2145 | 100 | Plus |
| 3R | 32079331 | 3R | 13777909..13778326 | 2458..2875 | 2090 | 100 | Plus |
| 3R | 32079331 | 3R | 13776230..13776558 | 1503..1831 | 1630 | 99.7 | Plus |
| 3R | 32079331 | 3R | 13776787..13776966 | 1825..2004 | 885 | 99.4 | Plus |
| 3R | 32079331 | 3R | 13773934..13774018 | 77..161 | 425 | 100 | Plus |
| 3R | 32079331 | 3R | 13774504..13774684 | 393..573 | 425 | 82.3 | Plus |
| 3R | 32079331 | 3R | 13774543..13774723 | 354..534 | 425 | 82.3 | Plus |
| 3R | 32079331 | 3R | 13775091..13775169 | 626..704 | 395 | 100 | Plus |
| 3R | 32079331 | 3R | 13775227..13775305 | 704..782 | 395 | 100 | Plus |
| 3R | 32079331 | 3R | 13775381..13775459 | 782..860 | 395 | 100 | Plus |
| 3R | 32079331 | 3R | 13772350..13772410 | 17..77 | 305 | 100 | Plus |
| 3R | 32079331 | 3R | 13774479..13774737 | 446..704 | 275 | 73.7 | Plus |
| 3R | 32079331 | 3R | 13774479..13774606 | 407..534 | 265 | 80.5 | Plus |
| 3R | 32079331 | 3R | 13774557..13774684 | 329..456 | 265 | 80.5 | Plus |
| 3R | 32079331 | 3R | 13774504..13774684 | 510..690 | 260 | 76.2 | Plus |
| 3R | 32079331 | 3R | 13774596..13774725 | 329..458 | 215 | 77.7 | Plus |
| 3R | 32079331 | 3R | 13774798..13774837 | 587..626 | 200 | 100 | Plus |
| 3R | 32079331 | 3R | 13775529..13775595 | 704..770 | 200 | 86.6 | Plus |
| 3R | 32079331 | 3R | 13775228..13775293 | 861..926 | 195 | 86.4 | Plus |
| 3R | 32079331 | 3R | 13774503..13774645 | 626..768 | 190 | 75.5 | Plus |
| 3R | 32079331 | 3R | 13774545..13774725 | 746..926 | 185 | 73.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:15:45 has no hits.
BS14072.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-13 13:55:47 Download gff for
BS14072.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9297-RB | 231..3088 | 17..2874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:00 Download gff for
BS14072.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9297-RC | 262..3119 | 17..2874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:23 Download gff for
BS14072.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9297-RC | 262..3119 | 17..2874 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:23 Download gff for
BS14072.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13772350..13772410 | 17..77 | 100 | -> | Plus |
| 3R | 13773935..13774018 | 78..161 | 100 | -> | Plus |
| 3R | 13774312..13774737 | 162..587 | 100 | -> | Plus |
| 3R | 13774799..13774837 | 588..626 | 100 | -> | Plus |
| 3R | 13775092..13775169 | 627..704 | 100 | -> | Plus |
| 3R | 13775228..13775305 | 705..782 | 100 | -> | Plus |
| 3R | 13775382..13775459 | 783..860 | 100 | -> | Plus |
| 3R | 13775530..13776176 | 861..1507 | 100 | -> | Plus |
| 3R | 13776235..13776556 | 1508..1829 | 100 | -> | Plus |
| 3R | 13776792..13776964 | 1830..2002 | 100 | -> | Plus |
| 3R | 13777253..13777708 | 2003..2458 | 100 | -> | Plus |
| 3R | 13777910..13778325 | 2459..2874 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:00 Download gff for
BS14072.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9598072..9598132 | 17..77 | 100 | -> | Plus |
| arm_3R | 9599657..9599740 | 78..161 | 100 | -> | Plus |
| arm_3R | 9600034..9600459 | 162..587 | 100 | -> | Plus |
| arm_3R | 9600521..9600559 | 588..626 | 100 | -> | Plus |
| arm_3R | 9600814..9600891 | 627..704 | 100 | -> | Plus |
| arm_3R | 9600950..9601027 | 705..782 | 100 | -> | Plus |
| arm_3R | 9601104..9601181 | 783..860 | 100 | -> | Plus |
| arm_3R | 9601252..9601898 | 861..1507 | 100 | -> | Plus |
| arm_3R | 9601957..9602278 | 1508..1829 | 100 | -> | Plus |
| arm_3R | 9602514..9602686 | 1830..2002 | 100 | -> | Plus |
| arm_3R | 9602975..9603430 | 2003..2458 | 100 | -> | Plus |
| arm_3R | 9603632..9604047 | 2459..2874 | 100 | | Plus |
BS14072.pep Sequence
Translation from 16 to 2874
> BS14072.pep
MGRLTIWFLLGLTLIAVSNNVGFVNADVGPSESECRPYIEKAIHELKTDG
VRDGSGELQSDQPRGDDDDDDDDGGHSAVDEKDTIEIETVELDSTEDAKS
ANDLDGDGIPDDEDDDIDGDGIPNEKDDDIDGDGIPNDEDDDIDGDGIPN
EDDDDIDGDGVPNSKDEDIDGDGVPNSKDEDIDGDGKANHEDDDLDGDGT
PNHEDEDLDGDGVPNEEDDDLDGDGKINHEDEDLDGDGVKNDEDEDLDGD
GKVNHEDEDLDGDGVKNEKDDDLDGDGTNNSQDEDLDGDGVPNEKDDDLD
GDGILNEHDGDVDGDGVPNEHDHKDSGENADDDDDDDDEDDKEAVKKRSK
REVDAAPVLDIEAPPSPAEEFPVEEEIVKEASAEEEAEVEAVKEEEPEQE
AVQEPEPEPVVEPEAEVQPEPVQQEEEKAESAEAKEEEKPAPVEEAEAEE
ESVQPEAAPKEPEAVQEEAQEDEPQTDGAQDAADDDDDTKPEDELLWEGH
IPENRRSRQHITELLQLDEEFNAREKATDNVAEIILRDIKRIYENAVKPL
ETLYKYRDLSNRHFSDPEIFSKPLILFMGPWSGGKSSILNYLTDNEYTPN
SLRTGAEPSPAYFNILMWGNETEVLDGTQLAADYTFAGLQKFGQGLEERL
RGLKMKSKILEKVNIVEIPGILEVRKQVSRVFPFNDACQWFIDRADIIFL
VYDPAKLDVGPETEAILDQLKGREYQTRIILNKADTVKPEELLRVQGALI
WNISPLMSSAQPPLMYTTSLWTHPYQDGAPARLLLAQERAFLRDLRTAID
KRIEHKIASARRFAVRVRNHAKMVDCYLNTFNNHKTLFGNKKRIADDIID
HPQNYHIYEGLSTLTNISRYDLPDPEVYRDFFRLNPLYEFKKLRDTCTYF
RGCPITKLDLAIAYELPELAGKYKKMSEAALAAIEAQQQDGTIGQAEPKR
TS*
BS14072.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:32:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9297-PE | 952 | CG9297-PE | 1..952 | 1..952 | 5037 | 100 | Plus |
| CG9297-PD | 952 | CG9297-PD | 1..952 | 1..952 | 5037 | 100 | Plus |
| CG9297-PC | 952 | CG9297-PC | 1..952 | 1..952 | 5037 | 100 | Plus |
| CG9297-PB | 952 | CG9297-PB | 1..952 | 1..952 | 5037 | 100 | Plus |
| CG9297-PA | 930 | CG9297-PA | 1..930 | 1..952 | 4894 | 97.7 | Plus |
