Clone Sequence Records
BS14073.3prime Sequence
512 bp (488 high quality bases) assembled on 2006-10-13
> BS14073.3prime
ATGGTCTAGAAAGCTTTTAATATGGCGCTTGCTTGCGTGATTTCTTCTCC
TTCCTGGCCTTCAGTTTTTCACTGCTGAACGCCGTTCCACTTGCGTCCTG
TGCCCAAACCGTAACAATGCCGGATTCTCCGCCTGTAAAAAGTAAACTTC
TCTTTGAATCGAAAAGACTATCTCTGACGATCTGCTTGTTTCCCTGGAAA
TTGGCCAATGGCTGGAGGCTGTTCTTCGAGGTAACGCTAACGGAGCGCAG
GATCTCGCCCTTGTTGAAGTTGGTGCCCGCCAACAGAAAGACTCCTCCGT
CTTCCTGATTGTGGGCATTTATCAGGTTGAAGTTTGCGGCTTTTTTTCTC
CTTATTGCCGCCGTAACATCCGGCCGCTCGAAGGATGCCACCTCGTCGCC
CTCCTCGCACTCGTAGCTCTTGAAATCGCCAGTGGTCGTGACGCAGGATA
TGATGTCCTTGTCGTAGACGTTTCTGTGCCACGCCAACCGGGCCACACTG
CTCTCCGTGTTG
BS14073.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12134-PA | 1236 | CG12134-RA | 741..1236 | 512..17 | 2480 | 100 | Minus |
CG12134-PB | 1026 | CG12134-RB | 531..1026 | 512..17 | 2480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:19:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12134-RB | 1581 | CG12134-RB | 1047..1543 | 512..16 | 2485 | 100 | Minus |
CG12134-RA | 1526 | CG12134-RA | 992..1488 | 512..16 | 2485 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:19:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9972189..9972443 | 512..258 | 1275 | 100 | Minus |
2R | 25286936 | 2R | 9972500..9972742 | 258..16 | 1215 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:19:37 has no hits.
BS14073.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:27 Download gff for
BS14073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12134-PB | 531..1026 | 17..512 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:47:35 Download gff for
BS14073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12134-RA | 992..1488 | 16..512 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:37:15 Download gff for
BS14073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12134-RA | 992..1488 | 16..512 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:37:15 Download gff for
BS14073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9972189..9972443 | 258..512 | 100 | -> | Minus |
2R | 9972501..9972742 | 16..257 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:47:35 Download gff for
BS14073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5860006..5860247 | 16..257 | 100 | | Minus |
arm_2R | 5859694..5859948 | 258..512 | 100 | -> | Minus |
BS14073.5prime Sequence
617 bp (490 high quality bases) assembled on 2006-10-13
> BS14073.5prime
GAAGTTATCAGTCGACATGGCCGCCGGACTGTCCAATTCAGCAGTGCATA
TCTATAATTTGGATTCGGGCGCCGGGAAACTGGAGAACTTTAGCTATCTG
CCGCCCACAGATTCGCCGCAGAGCGTAAGCATCTGTGGCGTTCGTTTCCT
CGACGAAGGACCACACAACATCCTGGTCGGCACCACCGATGGCTACGTGC
GCCTCTACGATCTGCGGCTAAGAGGCGAACAGGCGCGGTTCAAGTACACG
CAGCACCCTAATGTGCCTCCGGTGCCCAAATCGCTTTCGTGCTTCGACAG
AAACGCCAACGGTCGGATTATTTGCTGCGGCACCGAACAGTTTCACAGCA
ACGCGTTCCTCGTGTTCTTCGATGTTCGGGAGCGCCAGCAAATGGGCGTC
TACTTCGAAAGCCATGAGGACGATATCACCTCGTTGCGGTTCCATGCCCA
GAATCCAGACCTTCTGGCCACGGGCAGTGTGGACGGGCTAGTAAACGTGT
TCGATGTGAAGGAGCCGGACGAGGATGAAGCACTGCTTAACACCTTCAAC
ACGGAGAGCAGTGTGGCCCGGTTGGCGTGGCACAGAAACGTCTACAACAA
GGACATCATATCCTGCG
BS14073.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12134-PA | 1236 | CG12134-RA | 211..811 | 17..617 | 2980 | 99.8 | Plus |
CG12134-PB | 1026 | CG12134-RB | 1..601 | 17..617 | 2980 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:01:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12134-RB | 1581 | CG12134-RB | 517..1117 | 17..617 | 2990 | 99.8 | Plus |
CG12134-RA | 1526 | CG12134-RA | 462..1062 | 17..617 | 2990 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:01:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9971659..9972259 | 17..617 | 2990 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:01:03 has no hits.
BS14073.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:28 Download gff for
BS14073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12134-PB | 1..601 | 17..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:41 Download gff for
BS14073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12134-RA | 456..1062 | 8..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:15 Download gff for
BS14073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12134-RA | 456..1062 | 8..617 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:15 Download gff for
BS14073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9971653..9972259 | 8..617 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:41 Download gff for
BS14073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5859158..5859764 | 8..617 | 99 | | Plus |
BS14073.complete Sequence
1058 bp assembled on 2006-11-01
GenBank Submission: FJ637595
> BS14073.complete
GAAGTTATCAGTCGACATGGCCGCCGGACTGTCCAATTCAGCAGTGCATA
TCTATAATTTGGATTCGGGCGCCGGGAAACTGGAGAACTTTAGCTATCTG
CCGCCCACAGATTCGCCGCAGAGCGTAAGCATCTGTGGCGTTCGTTTCCT
CGACGAAGGACCACACAACATCCTGGTCGGCACCACCGATGGCTACGTGC
GCCTCTACGATCTGCGGCTAAGAGGCGAACAGGCGCGGTTCAAGTACACG
CAGCACCCTAATGTGCCTCCGGTGCCCAAATCGCTTTCGTGCTTCGACAG
AAACGCCAACGGTCGGATTATTTGCTGCGGCACCGAACAGTTTCACAGCA
ACGCGTTCCTCGTGTTCTTCGATGTTCGGGAGCGCCAGCAAATGGGCGTC
TACTTCGAAAGCCATGAGGACGATATCACCTCGTTGCGGTTCCATGCCCA
GAATCCAGACCTTCTGGCCACGGGCAGTGTGGACGGGCTAGTAAACGTGT
TCGATGTGAAGGAGCCGGACGAGGATGAAGCACTGCTTAACACCTTCAAC
ACGGAGAGCAGTGTGGCCCGGTTGGCGTGGCACAGAAACGTCTACGACAA
GGACATCATATCCTGCGTCACGACCACTGGCGATTTCAAGAGCTACGAGT
GCGAGGAGGGCGACGAGGTGGCATCCTTCGAGCGGCCGGATGTTACGGCG
GCAATAAGGAGAAAAAAAGCCGCAAACTTCAACCTGATAAATGCCCACAA
TCAGGAAGACGGAGGAGTCTTTCTGTTGGCGGGCACCAACTTCAACAAGG
GCGAGATCCTGCGCTCCGTTAGCGTTACCTCGAAGAACAGCCTCCAGCCA
TTGGCCAATTTCCAGGGAAACAAGCAGATCGTCAGAGATAGTCTTTTCGA
TTCAAAGAGAAGTTTACTTTTTACAGGCGGAGAATCCGGCATTGTTACGG
TTTGGGCACAGGACGCAAGTGGAACGGCGTTCAGCAGTGAAAAACTGAAG
GCCAGGAAGGAGAAGAAATCACGCAAGCAAGCGCCATATTAAAAGCTTTC
TAGACCAT
BS14073.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:58:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12134-RB | 1026 | CG12134-PB | 1..1026 | 17..1042 | 5130 | 100 | Plus |
CG12134-RA | 1236 | CG12134-PA | 211..1236 | 17..1042 | 5130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12134-RB | 1581 | CG12134-RB | 517..1543 | 17..1043 | 5135 | 100 | Plus |
CG12134-RA | 1526 | CG12134-RA | 462..1488 | 17..1043 | 5135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9971659..9972443 | 17..801 | 3925 | 100 | Plus |
2R | 25286936 | 2R | 9972500..9972742 | 801..1043 | 1215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:58:58 has no hits.
BS14073.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:02 Download gff for
BS14073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12134-RB | 1..1026 | 17..1042 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:18 Download gff for
BS14073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12134-RB | 317..1349 | 8..1043 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:35 Download gff for
BS14073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12134-RA | 462..1485 | 17..1040 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:03 Download gff for
BS14073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12134-RB | 317..1349 | 8..1043 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:16 Download gff for
BS14073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12134-RA | 462..1485 | 17..1040 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:16 Download gff for
BS14073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9971659..9972443 | 17..801 | 100 | -> | Plus |
2R | 9972501..9972739 | 802..1040 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:35 Download gff for
BS14073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5859164..5859948 | 17..801 | 100 | -> | Plus |
arm_2R | 5860006..5860244 | 802..1040 | 100 | | Plus |
BS14073.pep Sequence
Translation from 16 to 1041
> BS14073.pep
MAAGLSNSAVHIYNLDSGAGKLENFSYLPPTDSPQSVSICGVRFLDEGPH
NILVGTTDGYVRLYDLRLRGEQARFKYTQHPNVPPVPKSLSCFDRNANGR
IICCGTEQFHSNAFLVFFDVRERQQMGVYFESHEDDITSLRFHAQNPDLL
ATGSVDGLVNVFDVKEPDEDEALLNTFNTESSVARLAWHRNVYDKDIISC
VTTTGDFKSYECEEGDEVASFERPDVTAAIRRKKAANFNLINAHNQEDGG
VFLLAGTNFNKGEILRSVSVTSKNSLQPLANFQGNKQIVRDSLFDSKRSL
LFTGGESGIVTVWAQDASGTAFSSEKLKARKEKKSRKQAPY*
BS14073.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12134-PB | 341 | CG12134-PB | 1..341 | 1..341 | 1778 | 100 | Plus |
CG12134-PA | 411 | CG12134-PA | 71..411 | 1..341 | 1778 | 100 | Plus |