Clone BS14073 Report

Search the DGRC for BS14073

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:140
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG12134-RB
Protein status:BS14073.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14073.3prime Sequence

512 bp (488 high quality bases) assembled on 2006-10-13

> BS14073.3prime
ATGGTCTAGAAAGCTTTTAATATGGCGCTTGCTTGCGTGATTTCTTCTCC
TTCCTGGCCTTCAGTTTTTCACTGCTGAACGCCGTTCCACTTGCGTCCTG
TGCCCAAACCGTAACAATGCCGGATTCTCCGCCTGTAAAAAGTAAACTTC
TCTTTGAATCGAAAAGACTATCTCTGACGATCTGCTTGTTTCCCTGGAAA
TTGGCCAATGGCTGGAGGCTGTTCTTCGAGGTAACGCTAACGGAGCGCAG
GATCTCGCCCTTGTTGAAGTTGGTGCCCGCCAACAGAAAGACTCCTCCGT
CTTCCTGATTGTGGGCATTTATCAGGTTGAAGTTTGCGGCTTTTTTTCTC
CTTATTGCCGCCGTAACATCCGGCCGCTCGAAGGATGCCACCTCGTCGCC
CTCCTCGCACTCGTAGCTCTTGAAATCGCCAGTGGTCGTGACGCAGGATA
TGATGTCCTTGTCGTAGACGTTTCTGTGCCACGCCAACCGGGCCACACTG
CTCTCCGTGTTG

BS14073.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG12134-PA 1236 CG12134-RA 741..1236 512..17 2480 100 Minus
CG12134-PB 1026 CG12134-RB 531..1026 512..17 2480 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG12134-RB 1581 CG12134-RB 1047..1543 512..16 2485 100 Minus
CG12134-RA 1526 CG12134-RA 992..1488 512..16 2485 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:19:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9972189..9972443 512..258 1275 100 Minus
2R 25286936 2R 9972500..9972742 258..16 1215 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:19:37 has no hits.

BS14073.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:27 Download gff for BS14073.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12134-PB 531..1026 17..512 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:47:35 Download gff for BS14073.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 992..1488 16..512 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:37:15 Download gff for BS14073.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 992..1488 16..512 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:37:15 Download gff for BS14073.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9972189..9972443 258..512 100 -> Minus
2R 9972501..9972742 16..257 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:47:35 Download gff for BS14073.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5860006..5860247 16..257 100   Minus
arm_2R 5859694..5859948 258..512 100 -> Minus

BS14073.5prime Sequence

617 bp (490 high quality bases) assembled on 2006-10-13

> BS14073.5prime
GAAGTTATCAGTCGACATGGCCGCCGGACTGTCCAATTCAGCAGTGCATA
TCTATAATTTGGATTCGGGCGCCGGGAAACTGGAGAACTTTAGCTATCTG
CCGCCCACAGATTCGCCGCAGAGCGTAAGCATCTGTGGCGTTCGTTTCCT
CGACGAAGGACCACACAACATCCTGGTCGGCACCACCGATGGCTACGTGC
GCCTCTACGATCTGCGGCTAAGAGGCGAACAGGCGCGGTTCAAGTACACG
CAGCACCCTAATGTGCCTCCGGTGCCCAAATCGCTTTCGTGCTTCGACAG
AAACGCCAACGGTCGGATTATTTGCTGCGGCACCGAACAGTTTCACAGCA
ACGCGTTCCTCGTGTTCTTCGATGTTCGGGAGCGCCAGCAAATGGGCGTC
TACTTCGAAAGCCATGAGGACGATATCACCTCGTTGCGGTTCCATGCCCA
GAATCCAGACCTTCTGGCCACGGGCAGTGTGGACGGGCTAGTAAACGTGT
TCGATGTGAAGGAGCCGGACGAGGATGAAGCACTGCTTAACACCTTCAAC
ACGGAGAGCAGTGTGGCCCGGTTGGCGTGGCACAGAAACGTCTACAACAA
GGACATCATATCCTGCG

BS14073.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG12134-PA 1236 CG12134-RA 211..811 17..617 2980 99.8 Plus
CG12134-PB 1026 CG12134-RB 1..601 17..617 2980 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:01:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG12134-RB 1581 CG12134-RB 517..1117 17..617 2990 99.8 Plus
CG12134-RA 1526 CG12134-RA 462..1062 17..617 2990 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:01:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9971659..9972259 17..617 2990 99.8 Plus
Blast to na_te.dros performed on 2015-02-12 04:01:03 has no hits.

BS14073.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:28 Download gff for BS14073.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12134-PB 1..601 17..617 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:41 Download gff for BS14073.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 456..1062 8..617 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:15 Download gff for BS14073.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 456..1062 8..617 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:15 Download gff for BS14073.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9971653..9972259 8..617 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:41 Download gff for BS14073.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5859158..5859764 8..617 99   Plus

BS14073.complete Sequence

1058 bp assembled on 2006-11-01

GenBank Submission: FJ637595

> BS14073.complete
GAAGTTATCAGTCGACATGGCCGCCGGACTGTCCAATTCAGCAGTGCATA
TCTATAATTTGGATTCGGGCGCCGGGAAACTGGAGAACTTTAGCTATCTG
CCGCCCACAGATTCGCCGCAGAGCGTAAGCATCTGTGGCGTTCGTTTCCT
CGACGAAGGACCACACAACATCCTGGTCGGCACCACCGATGGCTACGTGC
GCCTCTACGATCTGCGGCTAAGAGGCGAACAGGCGCGGTTCAAGTACACG
CAGCACCCTAATGTGCCTCCGGTGCCCAAATCGCTTTCGTGCTTCGACAG
AAACGCCAACGGTCGGATTATTTGCTGCGGCACCGAACAGTTTCACAGCA
ACGCGTTCCTCGTGTTCTTCGATGTTCGGGAGCGCCAGCAAATGGGCGTC
TACTTCGAAAGCCATGAGGACGATATCACCTCGTTGCGGTTCCATGCCCA
GAATCCAGACCTTCTGGCCACGGGCAGTGTGGACGGGCTAGTAAACGTGT
TCGATGTGAAGGAGCCGGACGAGGATGAAGCACTGCTTAACACCTTCAAC
ACGGAGAGCAGTGTGGCCCGGTTGGCGTGGCACAGAAACGTCTACGACAA
GGACATCATATCCTGCGTCACGACCACTGGCGATTTCAAGAGCTACGAGT
GCGAGGAGGGCGACGAGGTGGCATCCTTCGAGCGGCCGGATGTTACGGCG
GCAATAAGGAGAAAAAAAGCCGCAAACTTCAACCTGATAAATGCCCACAA
TCAGGAAGACGGAGGAGTCTTTCTGTTGGCGGGCACCAACTTCAACAAGG
GCGAGATCCTGCGCTCCGTTAGCGTTACCTCGAAGAACAGCCTCCAGCCA
TTGGCCAATTTCCAGGGAAACAAGCAGATCGTCAGAGATAGTCTTTTCGA
TTCAAAGAGAAGTTTACTTTTTACAGGCGGAGAATCCGGCATTGTTACGG
TTTGGGCACAGGACGCAAGTGGAACGGCGTTCAGCAGTGAAAAACTGAAG
GCCAGGAAGGAGAAGAAATCACGCAAGCAAGCGCCATATTAAAAGCTTTC
TAGACCAT

BS14073.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:58:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG12134-RB 1026 CG12134-PB 1..1026 17..1042 5130 100 Plus
CG12134-RA 1236 CG12134-PA 211..1236 17..1042 5130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG12134-RB 1581 CG12134-RB 517..1543 17..1043 5135 100 Plus
CG12134-RA 1526 CG12134-RA 462..1488 17..1043 5135 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9971659..9972443 17..801 3925 100 Plus
2R 25286936 2R 9972500..9972742 801..1043 1215 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:58:58 has no hits.

BS14073.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:02 Download gff for BS14073.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RB 1..1026 17..1042 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:18 Download gff for BS14073.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RB 317..1349 8..1043 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:35 Download gff for BS14073.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 462..1485 17..1040 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:03 Download gff for BS14073.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RB 317..1349 8..1043 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:16 Download gff for BS14073.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 462..1485 17..1040 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:16 Download gff for BS14073.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9971659..9972443 17..801 100 -> Plus
2R 9972501..9972739 802..1040 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:35 Download gff for BS14073.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5859164..5859948 17..801 100 -> Plus
arm_2R 5860006..5860244 802..1040 100   Plus

BS14073.pep Sequence

Translation from 16 to 1041

> BS14073.pep
MAAGLSNSAVHIYNLDSGAGKLENFSYLPPTDSPQSVSICGVRFLDEGPH
NILVGTTDGYVRLYDLRLRGEQARFKYTQHPNVPPVPKSLSCFDRNANGR
IICCGTEQFHSNAFLVFFDVRERQQMGVYFESHEDDITSLRFHAQNPDLL
ATGSVDGLVNVFDVKEPDEDEALLNTFNTESSVARLAWHRNVYDKDIISC
VTTTGDFKSYECEEGDEVASFERPDVTAAIRRKKAANFNLINAHNQEDGG
VFLLAGTNFNKGEILRSVSVTSKNSLQPLANFQGNKQIVRDSLFDSKRSL
LFTGGESGIVTVWAQDASGTAFSSEKLKARKEKKSRKQAPY*

BS14073.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG12134-PB 341 CG12134-PB 1..341 1..341 1778 100 Plus
CG12134-PA 411 CG12134-PA 71..411 1..341 1778 100 Plus