Clone BS14076 Report

Search the DGRC for BS14076

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:140
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG12746-RB
Protein status:BS14076.pep: full length peptide match
Sequenced Size:1124

Clone Sequence Records

BS14076.complete Sequence

1124 bp assembled on 2009-12-07

GenBank Submission: KX802257

> BS14076.complete
GAAGTTATCAGTCGACATGACTGCGAGCAAGGAAGGTCAAGAATCCAGGC
GAACCCTCAGCGACAGTTCCGCAGAGGACGTCAGGAATACAGGATCGAGG
ACCAGGACCAACGACGACGAAATGTGGCGCAATGAACTTGCTATGAACAC
GGACAGCAGCTCCGTTCAGCCAGAAAAGCGAGAGGAACGAAGCCACAGAA
CAGGAAACTCTAATGCGAAGCTCAGCGATGCCGTAGATGTTGTTCTTCGC
GTTCTCCTCGTCATTACCTTCTTCAAGTTGGAGACGATGACAGCATTCAA
ACGGGAAATCCACGAGGAAGAGCTGTGGCTATACAAGAACCCAAGGCGAC
CGGACATTGTCAGGGGCGGGGAGCTGCTCTTCTGGGTGATAGTGGCTCCC
TTTCTGGTCACTATCGCCTTCTACTGGTACACAAGAGACAGGCGGGACTT
TAGAGCCGCCAGCTGGGCCTGGACACTGGCCCTGTGCATGAACGGCATCC
CAACGAGCGTACTAAAGATAACAGTGGGGCGGCCCAGGCCCGACTATTTT
TACCGCTGCTTTCCCGATGGCGTGATGGTGCTTAACACAACGTCAAATGG
CGTGGACACCTCCATCCTGGATTTCAATTGCACAGGGCTTCCGGGCGACA
TAAACGAAGGCCGCAAGAGCTTCCCCAGCGGACACTCGTCGTTCGCCTTT
GCGAGTTTCGGTTTCATTGCCTATTACATTGGCGCCAAGCTGCACGCCTT
TGATAGCCGGGGACGCGGCCACACCTGGCGGCTCTGCATCGCTGTGATAC
CTCTGTTTATCGCACTGCTGGTTGCAGTTAGTCGCACCTGCGACTACCAC
CACCACTGGCAGGATGTGACCATCGGCGGGCTGATTGGCCTGTTTGCAGG
CTATATAAGCTACACACAATACTATCCCTCCATCTTCTGCCCTGATGCCG
GCATACCACTGGTCAGGTGGCCCAGCAGAGAGGGAAGCCAGTACCAGCGA
CTGTCTGGAAAGGACGACAATGGCAGTCGTGGTCCCCACCATCTCGATGG
TGGGGATGCGGTGCGGAGACCTCTGCTCGCTGACAAGGAGGAGTCCAAAT
GGTACTAAAAGCTTTCTAGACCAT

BS14076.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12746-RE 1092 CG12746-PE 1..1092 17..1108 5460 100 Plus
CG12746-RD 1092 CG12746-PD 1..1092 17..1108 5460 100 Plus
CG12746-RB 1092 CG12746-PB 1..1092 17..1108 5460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG12746-RE 1509 CG12746-RE 339..1441 13..1115 5500 99.9 Plus
CG12746-RD 1381 CG12746-RD 211..1313 13..1115 5500 99.9 Plus
CG12746-RB 1339 CG12746-RB 169..1271 13..1115 5500 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5566945..5567367 693..1115 2115 100 Plus
3R 32079331 3R 5566467..5566885 274..692 2095 100 Plus
3R 32079331 3R 5566138..5566398 13..273 1290 99.6 Plus
Blast to na_te.dros performed on 2014-11-28 01:51:21 has no hits.

BS14076.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:15 Download gff for BS14076.complete
Subject Subject Range Query Range Percent Splice Strand
CG12746-RE 343..1432 17..1106 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:59:39 Download gff for BS14076.complete
Subject Subject Range Query Range Percent Splice Strand
CG12746-RB 173..1262 17..1106 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:20:48 Download gff for BS14076.complete
Subject Subject Range Query Range Percent Splice Strand
CG12746-RE 343..1432 17..1106 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:26 Download gff for BS14076.complete
Subject Subject Range Query Range Percent Splice Strand
CG12746-RB 173..1262 17..1106 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:26 Download gff for BS14076.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5566142..5566398 17..273 100 -> Plus
3R 5566467..5566885 274..692 100 -> Plus
3R 5566945..5567358 693..1106 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:59:39 Download gff for BS14076.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1391864..1392120 17..273 100 -> Plus
arm_3R 1392189..1392607 274..692 100 -> Plus
arm_3R 1392667..1393080 693..1106 100   Plus

BS14076.3prime Sequence

643 bp (540 high quality bases) assembled on 2006-10-13

> BS14076.3prime
ATGGTCTAGAAAGCTTTTAGTACCATTTGGACTCCTCCTTGTCAGCGAGC
AGAGGTCTCCGCACCGCATCCCCACCATCGAGATGGTGGGGACCACGACT
GCCATTGTCGTCCTTTCCAGACAGTCGCTGGTACTGGCTTCCCTCTCTGC
TGGGCCACCTGACCAGTGGTATGCCGGCATCAGGGCAGAAGATGGAGGGA
TAGTATTGTGTGTAGCTTATATAGCCTGCAAACAGGCCAATCAGCCCGCC
GATGGTCACATCCTGCCAGTGGTGGTGGTAGTCGCAGGTGCGACTAACTG
CAACCAGCAGTGCGATAAACAGAGGTATCACAGCGATGCAGAGCCGCCAG
GTGTGGCCGCGTCCCCGGCTATCAAAGGCGTGCAGCTTGGCGCCAATGTA
ATAGGCAATGAAACCGAAACTCGCAAAGGCGAACGACGAGTGTCCGCTGG
GGAAGCTCTTGCGGCCTTCGTTTATGTCGCCCGGAAGCCCTGTGCAATTG
AAATCCAGGATGGAGGTGTCCACGCCATTTGACGTTGTGTTAAGCACCAT
CACGCCATCGGGGAAGCAGCGGTAAAAATAGTCGGGGCTTGGGCCGCCCC
ACTGTTATCTTTAGTACGCTCGTTGGGATGCCGTTCATGCCCA

BS14076.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:26:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG12746-PB 1092 CG12746-RB 470..1092 640..17 3030 99.5 Minus
CG12746-PC 1239 CG12746-RC 617..1239 640..17 3030 99.5 Minus
CG12746-PD 1092 CG12746-RD 470..1092 640..17 3030 99.5 Minus
CG12746-PA 903 CG12746-RA 572..903 348..17 1660 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:16:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG12746-RE 1509 CG12746-RE 812..1441 640..10 3100 99.5 Minus
CG12746-RD 1381 CG12746-RD 684..1313 640..10 3100 99.5 Minus
CG12746-RB 1339 CG12746-RB 642..1271 640..10 3100 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5566945..5567367 432..10 2115 100 Minus
3R 32079331 3R 5566679..5566885 640..433 960 98.6 Minus
Blast to na_te.dros performed on 2015-02-11 22:16:25 has no hits.

BS14076.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:29 Download gff for BS14076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-PD 468..1092 17..642 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:38:43 Download gff for BS14076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-RB 640..1271 10..642 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:58:53 Download gff for BS14076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-RB 640..1271 10..642 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:58:53 Download gff for BS14076.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5566677..5566885 433..642 98 -> Minus
3R 5566945..5567367 10..432 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:38:43 Download gff for BS14076.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1392399..1392607 433..642 98 -> Minus
arm_3R 1392667..1393089 10..432 100   Minus

BS14076.5prime Sequence

634 bp (511 high quality bases) assembled on 2006-10-13

> BS14076.5prime
GAAGTTATCAGTCGACATGACTGCGAGCAAGGAAGGTCAAGAATCCAGGC
GAACCCTCAGCGACAGTTCCGCAGAGGACGTCAGGAATACAGGATCGAGG
ACCAGGACCAACGACGACGAAATGTGGCGCAATGAACTTGCTATGAACAC
GGACAGCAGCTCCGTTCAGCCAGAAAAGCGAGAGGAACGAAGCCACAGAA
CAGGAAACTCTAATGCGAAGCTCAGCGATGCCGTAGATGTTGTTCTTCGC
GTTCTCCTCGTCATTACCTTCTTCAAGTTGGAGACGATGACAGCATTCAA
ACGGGAAATCCACGAGGAAGAGCTGTGGCTATACAAGAACCCAAGGCGAC
CGGACATTGTCAGGGGCGGGGAGCTGCTCTTCTGGGTGATAGTGGCTCCC
TTTCTGGTCACTATCGCCTTCTACTGGTACACAAGAGACAGGCGGGACTT
TAGAGCCGCCAGCTGGGCCTGGACACTGGCCCTGTGCATGAACGGCATCC
CAACGAGCGTACTAAAGATAACAGTGGGGCGGCCCAGGCCCGACTATTTT
TTACGCTGCTTTCCCGATGCCGTGATGGTGCTTAACANCACGTCAAATGG
CGTGGACACCTCCATCCTGGATTTCAATTGCACA

BS14076.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG12746-PB 1092 CG12746-RB 1..618 17..634 2971 99.1 Plus
CG12746-PC 1239 CG12746-RC 148..765 17..634 2971 99.1 Plus
CG12746-PD 1092 CG12746-RD 1..618 17..634 2971 99.1 Plus
CG12746-PA 903 CG12746-RA 148..576 17..445 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:42:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG12746-RE 1509 CG12746-RE 339..960 13..634 3024 99 Plus
CG12746-RD 1381 CG12746-RD 211..832 13..634 3024 99 Plus
CG12746-RB 1339 CG12746-RB 169..790 13..634 3024 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5566467..5566827 274..634 1734 98.6 Plus
3R 32079331 3R 5566138..5566398 13..273 1290 99.6 Plus
Blast to na_te.dros performed on 2015-02-11 15:42:10 has no hits.

BS14076.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:30 Download gff for BS14076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-PD 1..617 17..633 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:21:11 Download gff for BS14076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-RB 169..789 13..633 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:13:26 Download gff for BS14076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-RB 169..789 13..633 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:13:26 Download gff for BS14076.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5566138..5566398 13..273 99 -> Plus
3R 5566467..5566826 274..633 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:21:11 Download gff for BS14076.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1391860..1392120 13..273 99 -> Plus
arm_3R 1392189..1392548 274..633 98   Plus

BS14076.pep Sequence

Translation from 16 to 1107

> BS14076.pep
MTASKEGQESRRTLSDSSAEDVRNTGSRTRTNDDEMWRNELAMNTDSSSV
QPEKREERSHRTGNSNAKLSDAVDVVLRVLLVITFFKLETMTAFKREIHE
EELWLYKNPRRPDIVRGGELLFWVIVAPFLVTIAFYWYTRDRRDFRAASW
AWTLALCMNGIPTSVLKITVGRPRPDYFYRCFPDGVMVLNTTSNGVDTSI
LDFNCTGLPGDINEGRKSFPSGHSSFAFASFGFIAYYIGAKLHAFDSRGR
GHTWRLCIAVIPLFIALLVAVSRTCDYHHHWQDVTIGGLIGLFAGYISYT
QYYPSIFCPDAGIPLVRWPSREGSQYQRLSGKDDNGSRGPHHLDGGDAVR
RPLLADKEESKWY*

BS14076.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:07:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG12746-PE 363 CG12746-PE 1..363 1..363 1950 100 Plus
CG12746-PD 363 CG12746-PD 1..363 1..363 1950 100 Plus
CG12746-PB 363 CG12746-PB 1..363 1..363 1950 100 Plus
wun-PA 300 CG8804-PA 123..268 158..298 184 32.5 Plus
wun-PB 379 CG8804-PB 202..347 158..298 184 32.5 Plus