Clone Sequence Records
BS14076.complete Sequence
1124 bp assembled on 2009-12-07
GenBank Submission: KX802257
> BS14076.complete
GAAGTTATCAGTCGACATGACTGCGAGCAAGGAAGGTCAAGAATCCAGGC
GAACCCTCAGCGACAGTTCCGCAGAGGACGTCAGGAATACAGGATCGAGG
ACCAGGACCAACGACGACGAAATGTGGCGCAATGAACTTGCTATGAACAC
GGACAGCAGCTCCGTTCAGCCAGAAAAGCGAGAGGAACGAAGCCACAGAA
CAGGAAACTCTAATGCGAAGCTCAGCGATGCCGTAGATGTTGTTCTTCGC
GTTCTCCTCGTCATTACCTTCTTCAAGTTGGAGACGATGACAGCATTCAA
ACGGGAAATCCACGAGGAAGAGCTGTGGCTATACAAGAACCCAAGGCGAC
CGGACATTGTCAGGGGCGGGGAGCTGCTCTTCTGGGTGATAGTGGCTCCC
TTTCTGGTCACTATCGCCTTCTACTGGTACACAAGAGACAGGCGGGACTT
TAGAGCCGCCAGCTGGGCCTGGACACTGGCCCTGTGCATGAACGGCATCC
CAACGAGCGTACTAAAGATAACAGTGGGGCGGCCCAGGCCCGACTATTTT
TACCGCTGCTTTCCCGATGGCGTGATGGTGCTTAACACAACGTCAAATGG
CGTGGACACCTCCATCCTGGATTTCAATTGCACAGGGCTTCCGGGCGACA
TAAACGAAGGCCGCAAGAGCTTCCCCAGCGGACACTCGTCGTTCGCCTTT
GCGAGTTTCGGTTTCATTGCCTATTACATTGGCGCCAAGCTGCACGCCTT
TGATAGCCGGGGACGCGGCCACACCTGGCGGCTCTGCATCGCTGTGATAC
CTCTGTTTATCGCACTGCTGGTTGCAGTTAGTCGCACCTGCGACTACCAC
CACCACTGGCAGGATGTGACCATCGGCGGGCTGATTGGCCTGTTTGCAGG
CTATATAAGCTACACACAATACTATCCCTCCATCTTCTGCCCTGATGCCG
GCATACCACTGGTCAGGTGGCCCAGCAGAGAGGGAAGCCAGTACCAGCGA
CTGTCTGGAAAGGACGACAATGGCAGTCGTGGTCCCCACCATCTCGATGG
TGGGGATGCGGTGCGGAGACCTCTGCTCGCTGACAAGGAGGAGTCCAAAT
GGTACTAAAAGCTTTCTAGACCAT
BS14076.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:51:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12746-RE | 1092 | CG12746-PE | 1..1092 | 17..1108 | 5460 | 100 | Plus |
CG12746-RD | 1092 | CG12746-PD | 1..1092 | 17..1108 | 5460 | 100 | Plus |
CG12746-RB | 1092 | CG12746-PB | 1..1092 | 17..1108 | 5460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12746-RE | 1509 | CG12746-RE | 339..1441 | 13..1115 | 5500 | 99.9 | Plus |
CG12746-RD | 1381 | CG12746-RD | 211..1313 | 13..1115 | 5500 | 99.9 | Plus |
CG12746-RB | 1339 | CG12746-RB | 169..1271 | 13..1115 | 5500 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5566945..5567367 | 693..1115 | 2115 | 100 | Plus |
3R | 32079331 | 3R | 5566467..5566885 | 274..692 | 2095 | 100 | Plus |
3R | 32079331 | 3R | 5566138..5566398 | 13..273 | 1290 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:51:21 has no hits.
BS14076.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:15 Download gff for
BS14076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RE | 343..1432 | 17..1106 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:59:39 Download gff for
BS14076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RB | 173..1262 | 17..1106 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:20:48 Download gff for
BS14076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RE | 343..1432 | 17..1106 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:26 Download gff for
BS14076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RB | 173..1262 | 17..1106 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:26 Download gff for
BS14076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5566142..5566398 | 17..273 | 100 | -> | Plus |
3R | 5566467..5566885 | 274..692 | 100 | -> | Plus |
3R | 5566945..5567358 | 693..1106 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:59:39 Download gff for
BS14076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1391864..1392120 | 17..273 | 100 | -> | Plus |
arm_3R | 1392189..1392607 | 274..692 | 100 | -> | Plus |
arm_3R | 1392667..1393080 | 693..1106 | 100 | | Plus |
BS14076.3prime Sequence
643 bp (540 high quality bases) assembled on 2006-10-13
> BS14076.3prime
ATGGTCTAGAAAGCTTTTAGTACCATTTGGACTCCTCCTTGTCAGCGAGC
AGAGGTCTCCGCACCGCATCCCCACCATCGAGATGGTGGGGACCACGACT
GCCATTGTCGTCCTTTCCAGACAGTCGCTGGTACTGGCTTCCCTCTCTGC
TGGGCCACCTGACCAGTGGTATGCCGGCATCAGGGCAGAAGATGGAGGGA
TAGTATTGTGTGTAGCTTATATAGCCTGCAAACAGGCCAATCAGCCCGCC
GATGGTCACATCCTGCCAGTGGTGGTGGTAGTCGCAGGTGCGACTAACTG
CAACCAGCAGTGCGATAAACAGAGGTATCACAGCGATGCAGAGCCGCCAG
GTGTGGCCGCGTCCCCGGCTATCAAAGGCGTGCAGCTTGGCGCCAATGTA
ATAGGCAATGAAACCGAAACTCGCAAAGGCGAACGACGAGTGTCCGCTGG
GGAAGCTCTTGCGGCCTTCGTTTATGTCGCCCGGAAGCCCTGTGCAATTG
AAATCCAGGATGGAGGTGTCCACGCCATTTGACGTTGTGTTAAGCACCAT
CACGCCATCGGGGAAGCAGCGGTAAAAATAGTCGGGGCTTGGGCCGCCCC
ACTGTTATCTTTAGTACGCTCGTTGGGATGCCGTTCATGCCCA
BS14076.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:26:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12746-PB | 1092 | CG12746-RB | 470..1092 | 640..17 | 3030 | 99.5 | Minus |
CG12746-PC | 1239 | CG12746-RC | 617..1239 | 640..17 | 3030 | 99.5 | Minus |
CG12746-PD | 1092 | CG12746-RD | 470..1092 | 640..17 | 3030 | 99.5 | Minus |
CG12746-PA | 903 | CG12746-RA | 572..903 | 348..17 | 1660 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:16:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12746-RE | 1509 | CG12746-RE | 812..1441 | 640..10 | 3100 | 99.5 | Minus |
CG12746-RD | 1381 | CG12746-RD | 684..1313 | 640..10 | 3100 | 99.5 | Minus |
CG12746-RB | 1339 | CG12746-RB | 642..1271 | 640..10 | 3100 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:16:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5566945..5567367 | 432..10 | 2115 | 100 | Minus |
3R | 32079331 | 3R | 5566679..5566885 | 640..433 | 960 | 98.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:16:25 has no hits.
BS14076.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:29 Download gff for
BS14076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-PD | 468..1092 | 17..642 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:38:43 Download gff for
BS14076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RB | 640..1271 | 10..642 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:58:53 Download gff for
BS14076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RB | 640..1271 | 10..642 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:58:53 Download gff for
BS14076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5566677..5566885 | 433..642 | 98 | -> | Minus |
3R | 5566945..5567367 | 10..432 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:38:43 Download gff for
BS14076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1392399..1392607 | 433..642 | 98 | -> | Minus |
arm_3R | 1392667..1393089 | 10..432 | 100 | | Minus |
BS14076.5prime Sequence
634 bp (511 high quality bases) assembled on 2006-10-13
> BS14076.5prime
GAAGTTATCAGTCGACATGACTGCGAGCAAGGAAGGTCAAGAATCCAGGC
GAACCCTCAGCGACAGTTCCGCAGAGGACGTCAGGAATACAGGATCGAGG
ACCAGGACCAACGACGACGAAATGTGGCGCAATGAACTTGCTATGAACAC
GGACAGCAGCTCCGTTCAGCCAGAAAAGCGAGAGGAACGAAGCCACAGAA
CAGGAAACTCTAATGCGAAGCTCAGCGATGCCGTAGATGTTGTTCTTCGC
GTTCTCCTCGTCATTACCTTCTTCAAGTTGGAGACGATGACAGCATTCAA
ACGGGAAATCCACGAGGAAGAGCTGTGGCTATACAAGAACCCAAGGCGAC
CGGACATTGTCAGGGGCGGGGAGCTGCTCTTCTGGGTGATAGTGGCTCCC
TTTCTGGTCACTATCGCCTTCTACTGGTACACAAGAGACAGGCGGGACTT
TAGAGCCGCCAGCTGGGCCTGGACACTGGCCCTGTGCATGAACGGCATCC
CAACGAGCGTACTAAAGATAACAGTGGGGCGGCCCAGGCCCGACTATTTT
TTACGCTGCTTTCCCGATGCCGTGATGGTGCTTAACANCACGTCAAATGG
CGTGGACACCTCCATCCTGGATTTCAATTGCACA
BS14076.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:26:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12746-PB | 1092 | CG12746-RB | 1..618 | 17..634 | 2971 | 99.1 | Plus |
CG12746-PC | 1239 | CG12746-RC | 148..765 | 17..634 | 2971 | 99.1 | Plus |
CG12746-PD | 1092 | CG12746-RD | 1..618 | 17..634 | 2971 | 99.1 | Plus |
CG12746-PA | 903 | CG12746-RA | 148..576 | 17..445 | 2145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:42:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12746-RE | 1509 | CG12746-RE | 339..960 | 13..634 | 3024 | 99 | Plus |
CG12746-RD | 1381 | CG12746-RD | 211..832 | 13..634 | 3024 | 99 | Plus |
CG12746-RB | 1339 | CG12746-RB | 169..790 | 13..634 | 3024 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:42:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5566467..5566827 | 274..634 | 1734 | 98.6 | Plus |
3R | 32079331 | 3R | 5566138..5566398 | 13..273 | 1290 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:42:10 has no hits.
BS14076.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:30 Download gff for
BS14076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-PD | 1..617 | 17..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:21:11 Download gff for
BS14076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RB | 169..789 | 13..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:13:26 Download gff for
BS14076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RB | 169..789 | 13..633 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:13:26 Download gff for
BS14076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5566138..5566398 | 13..273 | 99 | -> | Plus |
3R | 5566467..5566826 | 274..633 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:21:11 Download gff for
BS14076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1391860..1392120 | 13..273 | 99 | -> | Plus |
arm_3R | 1392189..1392548 | 274..633 | 98 | | Plus |
BS14076.pep Sequence
Translation from 16 to 1107
> BS14076.pep
MTASKEGQESRRTLSDSSAEDVRNTGSRTRTNDDEMWRNELAMNTDSSSV
QPEKREERSHRTGNSNAKLSDAVDVVLRVLLVITFFKLETMTAFKREIHE
EELWLYKNPRRPDIVRGGELLFWVIVAPFLVTIAFYWYTRDRRDFRAASW
AWTLALCMNGIPTSVLKITVGRPRPDYFYRCFPDGVMVLNTTSNGVDTSI
LDFNCTGLPGDINEGRKSFPSGHSSFAFASFGFIAYYIGAKLHAFDSRGR
GHTWRLCIAVIPLFIALLVAVSRTCDYHHHWQDVTIGGLIGLFAGYISYT
QYYPSIFCPDAGIPLVRWPSREGSQYQRLSGKDDNGSRGPHHLDGGDAVR
RPLLADKEESKWY*
BS14076.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:07:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12746-PE | 363 | CG12746-PE | 1..363 | 1..363 | 1950 | 100 | Plus |
CG12746-PD | 363 | CG12746-PD | 1..363 | 1..363 | 1950 | 100 | Plus |
CG12746-PB | 363 | CG12746-PB | 1..363 | 1..363 | 1950 | 100 | Plus |
wun-PA | 300 | CG8804-PA | 123..268 | 158..298 | 184 | 32.5 | Plus |
wun-PB | 379 | CG8804-PB | 202..347 | 158..298 | 184 | 32.5 | Plus |