Clone Sequence Records
BS14077.3prime Sequence
720 bp (674 high quality bases) assembled on 2006-10-13
> BS14077.3prime
ATGGTCTAGAAAGCTTTTAGCCGAAAATGTGCTGGGTGCCCGGAGGCACC
TTGTAGCTGGGATAGCCATTGTTCAACTGGTGCTTGGCAAAGAAGGGTGT
GTAGTCCCGGTTAACTCTCCTGGGACGGCAGACGGGACCCAACGCCAACT
GGCGTCGTTCCTCGTTCTCGCGAGCCGCGGCCTCCTTGTACTCCGGTGGT
GGCCATTTCAAATCTCCGCGCAATTTGCTGCCTCCCTGATAACTGACGGC
GGCTGGCTGCGAAGTGTAGACTGGTGCAGGCTTCTGGCTGACTGGAGCCT
CCTTGCGCAGGGTGATGATGCCGGGACTGGCGCCCCGGTAGCTATCCTGG
CCAGCGTAGGCTCCCGGATACTGCTGCTGCTGCTGTTGTTGCTGCTGCTG
CAGATCAGTCTGATCCTGCGAGTAGGGCAACTGGGGCTGCGAATAAGAAT
TGTATGGGGGTTGAGCATAGGTCGAGCCACCATTTTGCTGTGGGTAATAG
GATGGCTGTTGCTGTTGCTGCTGTTGGTACGGTGAAGCCTGGTACGATGG
CTGCTGCTGCTGCTGCTGCGGCTGGTTCCACTGTGGTGGCTGATAGGGCG
CCTGAGCCTGCGATTGAGGCTGATACTGCTGCTGCGGAACCTGCTGCTGC
TGCTGTTGCTGTTGCCACTGTGCTCCAGGCTGCTGGCCATCGTAAGACGG
AGCACCGTACTGCTGCTGCT
BS14077.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33205-PH | 1068 | CG33205-RH | 365..1068 | 720..17 | 3520 | 100 | Minus |
| CG33205-PB | 1506 | CG33205-RB | 804..1506 | 719..17 | 3515 | 100 | Minus |
| CG33205-PC | 1506 | CG33205-RC | 804..1506 | 719..17 | 3515 | 100 | Minus |
| CG33205-PA | 1389 | CG33205-RA | 687..1389 | 719..17 | 3515 | 100 | Minus |
| CG33205-PE | 948 | CG33205-RE | 247..948 | 718..17 | 3510 | 100 | Minus |
| CG33205-PF | 1065 | CG33205-RF | 364..1065 | 718..17 | 3510 | 100 | Minus |
| CG33205-PG | 1065 | CG33205-RG | 364..1065 | 718..17 | 3510 | 100 | Minus |
| CG33205-PI | 621 | CG33205-RI | 199..621 | 439..17 | 2115 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:12:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43897-RP | 2913 | CG43897-RP | 882..1585 | 720..17 | 3520 | 100 | Minus |
| CG43897-RO | 3546 | CG43897-RO | 1515..2218 | 720..17 | 3520 | 100 | Minus |
| CG43897-RK | 3074 | CG43897-RK | 1043..1746 | 720..17 | 3520 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:12:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9832194..9832680 | 720..234 | 2435 | 100 | Minus |
| 3L | 28110227 | 3L | 9832738..9832867 | 235..106 | 650 | 100 | Minus |
| 3L | 28110227 | 3L | 9832927..9833017 | 107..17 | 455 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 09:12:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2673 | 720..379 | 179 | 56.4 | Minus |
BS14077.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:30 Download gff for
BS14077.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33205-PH | 365..1068 | 17..720 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:03:46 Download gff for
BS14077.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43897-RK | 1043..1750 | 10..720 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:25:42 Download gff for
BS14077.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43897-RK | 1043..1750 | 10..720 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:25:42 Download gff for
BS14077.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9832194..9832679 | 235..720 | 100 | -> | Minus |
| 3L | 9832739..9832866 | 107..234 | 100 | -> | Minus |
| 3L | 9832928..9833021 | 10..106 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:03:46 Download gff for
BS14077.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9825839..9825966 | 107..234 | 100 | -> | Minus |
| arm_3L | 9825294..9825779 | 235..720 | 100 | -> | Minus |
| arm_3L | 9826028..9826121 | 10..106 | 96 | | Minus |
BS14077.5prime Sequence
810 bp (736 high quality bases) assembled on 2006-10-13
> BS14077.5prime
GAAGTTATCAGTCGACATGGCTGCCCTACAACGGAAGCTGGTGCACAAGC
AGTTCAACTCGCCCATGGGCCTCTATTCCCAGGAGAACGTGAAGGCCACA
TTGAACCGCGAGCTGAAAGCCTTCGGCGGCGAGGGGATTGAAGTCGACGA
TCAAATAACGAAGCCCCTGAACTTGGCCAACTCGGCCGTTCTGCGCGCCG
TCGAAGAGGAAGAACAACAAGCCAAATGTGGCTACAAGCGTGTGGCCTGG
CCACCGGCCTCCGAGGAGCGGATCATCCGGGAGTTCACCCCCCAGCCGCA
GACTCAGAGTCCGGCTCCCGGTGCCGGAGGCTACTATCCGCAGGCCCACG
CTCCCACAGCAGCAGCTGCCGCTCCACCTCAGCAGCAGCAGTACGGTGCT
CCGTCTTACGATGGCCAGCAGCCTGGAGCACAGTGGCAACAGCAACAGCA
GCAGCAGCAGGTTCCGCAGCAGCAGTATCAGCCTCAATCGCAGGCTCAGG
CGCCCTATCAGCCACCACAGTGGAACCAGCCGCAGCAGCAGCAGCAGCAG
CCATCGTACCAGGCTTCACCGTACCAACAGCAGCAACAGCAACAGCCATC
CTATTACCCACAGCAAAATGGTGGCTCGACCTATGCTCAACCCCCATACA
ATTCTTATTCGCAGCCCCAGTTGCCCTACTCGCAGGATCAGACTGATCTG
CAGCAGCAGCAACAACAGCAGCAGCAGCAGTATCCGGGAAGCTACGCTGG
CCAGGATAGCTACCGGGGCGCCAGTCCCGGCATCATCACCCTGCGCAAGG
AAGCTCCAGT
BS14077.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33205-PH | 1068 | CG33205-RH | 1..794 | 17..810 | 3895 | 99.6 | Plus |
| CG33205-PB | 1506 | CG33205-RB | 804..1232 | 382..810 | 2070 | 99.3 | Plus |
| CG33205-PC | 1506 | CG33205-RC | 804..1232 | 382..810 | 2070 | 99.3 | Plus |
| CG33205-PA | 1389 | CG33205-RA | 687..1115 | 382..810 | 2070 | 99.3 | Plus |
| CG33205-PF | 1065 | CG33205-RF | 364..791 | 383..810 | 2065 | 99.2 | Plus |
| CG33205-PG | 1065 | CG33205-RG | 364..791 | 383..810 | 2065 | 99.2 | Plus |
| CG33205-PE | 948 | CG33205-RE | 247..674 | 383..810 | 2065 | 99.2 | Plus |
| CG33205-PF | 1065 | CG33205-RF | 1..372 | 17..388 | 1860 | 100 | Plus |
| CG33205-PG | 1065 | CG33205-RG | 1..372 | 17..388 | 1860 | 100 | Plus |
| CG33205-PB | 1506 | CG33205-RB | 1..366 | 17..382 | 1830 | 100 | Plus |
| CG33205-PC | 1506 | CG33205-RC | 1..366 | 17..382 | 1830 | 100 | Plus |
| CG33205-PE | 948 | CG33205-RE | 3..255 | 136..388 | 1265 | 100 | Plus |
| CG33205-PA | 1389 | CG33205-RA | 3..249 | 136..382 | 1235 | 100 | Plus |
| CG33205-PI | 621 | CG33205-RI | 49..202 | 230..383 | 770 | 100 | Plus |
| CG33205-PI | 621 | CG33205-RI | 199..347 | 662..810 | 670 | 97.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:14:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43897-RH | 2802 | CG43897-RH | 407..1200 | 17..810 | 3925 | 99.6 | Plus |
| CG43897-RG | 3056 | CG43897-RG | 664..1454 | 17..810 | 3870 | 99.2 | Plus |
| CG43897-RF | 2799 | CG43897-RF | 407..1197 | 17..810 | 3870 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:14:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9832191..9832623 | 378..810 | 2120 | 99.3 | Plus |
| 3L | 28110227 | 3L | 9830633..9830785 | 230..382 | 765 | 100 | Plus |
| 3L | 28110227 | 3L | 9820441..9820560 | 17..136 | 600 | 100 | Plus |
| 3L | 28110227 | 3L | 9824545..9824641 | 135..231 | 485 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 17:14:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6916 | 357..553 | 240 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2282..2673 | 317..722 | 239 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..7009 | 336..598 | 238 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..7078 | 427..730 | 209 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2385..2632 | 354..618 | 158 | 56.4 | Plus |
BS14077.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:31 Download gff for
BS14077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33205-PH | 1..794 | 17..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:24:07 Download gff for
BS14077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43897-RH | 399..1200 | 9..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:08:08 Download gff for
BS14077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43897-RH | 399..1200 | 9..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:08:08 Download gff for
BS14077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9820433..9820559 | 9..135 | 96 | -> | Plus |
| 3L | 9824546..9824640 | 136..230 | 100 | -> | Plus |
| 3L | 9830634..9830785 | 231..382 | 100 | -> | Plus |
| 3L | 9832196..9832623 | 383..810 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:24:07 Download gff for
BS14077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9817646..9817740 | 136..230 | 100 | -> | Plus |
| arm_3L | 9823734..9823885 | 231..382 | 100 | -> | Plus |
| arm_3L | 9813533..9813659 | 9..135 | 96 | -> | Plus |
| arm_3L | 9825296..9825723 | 383..810 | 99 | | Plus |
BS14077.complete Sequence
1100 bp assembled on 2006-11-01
GenBank Submission: FJ637596
> BS14077.complete
GAAGTTATCAGTCGACATGGCTGCCCTACAACGGAAGCTGGTGCACAAGC
AGTTCAACTCGCCCATGGGCCTCTATTCCCAGGAGAACGTGAAGGCCACA
TTGAACCGCGAGCTGAAAGCCTTCGGCGGCGAGGGGATTGAAGTCGACGA
TCAAATAACGAAGCCCCTGAACTTGGCCAACTCGGCCGTTCTGCGCGCCG
TCGAAGAGGAAGAACAACAAGCCAAATGTGGCTACAAGCGTGTGGCCTGG
CCACCGGCCTCCGAGGAGCGGATCATCCGGGAGTTCACCCCCCAGCCGCA
GACTCAGAGTCCGGCTCCCGGTGCCGGAGGCTACTATCCGCAGGCCCACG
CTCCCACAGCAGCAGCTGCCGCTCCACCTCAGCAGCAGCAGTACGGTGCT
CCGTCTTACGATGGCCAGCAGCCTGGAGCACAGTGGCAACAGCAACAGCA
GCAGCAGCAGGTTCCGCAGCAGCAGTATCAGCCTCAATCGCAGGCTCAGG
CGCCCTATCAGCCACCACAGTGGAACCAGCCGCAGCAGCAGCAGCAGCAG
CCATCGTACCAGGCTTCACCGTACCAACAGCAGCAACAGCAACAGCCATC
CTATTACCCACAGCAAAATGGTGGCTCGACCTATGCTCAACCCCCATACA
ATTCTTATTCGCAGCCCCAGTTGCCCTACTCGCAGGATCAGACTGATCTG
CAGCAGCAGCAACAACAGCAGCAGCAGCAGTATCCGGGAGCCTACGCTGG
CCAGGATAGCTACCGGGGCGCCAGTCCCGGCATCATCACCCTGCGCAAGG
AGGCTCCAGTCAGCCAGAAGCCTGCACCAGTCTACACTTCGCAGCCAGCC
GCCGTCAGTTATCAGGGAGGCAGCAAATTGCGCGGAGATTTGAAATGGCC
ACCACCGGAGTACAAGGAGGCCGCGGCTCGCGAGAACGAGGAACGACGCC
AGTTGGCGTTGGGTCCCGTCTGCCGTCCCAGGAGAGTTAACCGGGACTAC
ACACCCTTCTTTGCCAAGCACCAGTTGAACAATGGCTATCCCAGCTACAA
GGTGCCTCCGGGCACCCAGCACATTTTCGGCTAAAAGCTTTCTAGACCAT
BS14077.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:15:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43897-RH | 1068 | CG43897-PH | 1..1068 | 17..1084 | 5340 | 100 | Plus |
| CG43897-RG | 1065 | CG43897-PG | 1..1065 | 17..1084 | 5260 | 99.7 | Plus |
| CG43897-RF | 1065 | CG43897-PF | 1..1065 | 17..1084 | 5260 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:15:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43897-RH | 2802 | CG43897-RH | 407..1474 | 17..1084 | 5340 | 100 | Plus |
| CG43897-RG | 3056 | CG43897-RG | 664..1728 | 17..1084 | 5260 | 99.7 | Plus |
| CG43897-RF | 2799 | CG43897-RF | 407..1471 | 17..1084 | 5260 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:15:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9832191..9832680 | 378..867 | 2450 | 100 | Plus |
| 3L | 28110227 | 3L | 9830633..9830785 | 230..382 | 765 | 100 | Plus |
| 3L | 28110227 | 3L | 9832738..9832867 | 866..995 | 650 | 100 | Plus |
| 3L | 28110227 | 3L | 9820441..9820560 | 17..136 | 600 | 100 | Plus |
| 3L | 28110227 | 3L | 9824545..9824641 | 135..231 | 485 | 100 | Plus |
| 3L | 28110227 | 3L | 9832927..9833017 | 994..1084 | 455 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 08:15:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6916 | 357..553 | 240 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2282..2673 | 317..722 | 239 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..7009 | 336..598 | 238 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..7078 | 427..730 | 209 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2385..2632 | 354..618 | 158 | 56.4 | Plus |
BS14077.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:04 Download gff for
BS14077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33205-RH | 1..1068 | 17..1084 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:39:38 Download gff for
BS14077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33205-RH | 403..1468 | 17..1082 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:21 Download gff for
BS14077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43897-RH | 407..1472 | 17..1082 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:04 Download gff for
BS14077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33205-RH | 395..1474 | 9..1091 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:14:08 Download gff for
BS14077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43897-RH | 407..1472 | 17..1082 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:14:08 Download gff for
BS14077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9820441..9820559 | 17..135 | 100 | -> | Plus |
| 3L | 9824546..9824640 | 136..230 | 100 | -> | Plus |
| 3L | 9830634..9830785 | 231..382 | 100 | -> | Plus |
| 3L | 9832196..9832679 | 383..866 | 100 | -> | Plus |
| 3L | 9832739..9832866 | 867..994 | 100 | -> | Plus |
| 3L | 9832928..9833015 | 995..1082 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:21 Download gff for
BS14077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9817646..9817740 | 136..230 | 100 | -> | Plus |
| arm_3L | 9823734..9823885 | 231..382 | 100 | -> | Plus |
| arm_3L | 9813541..9813659 | 17..135 | 100 | -> | Plus |
| arm_3L | 9825296..9825779 | 383..866 | 100 | -> | Plus |
| arm_3L | 9825839..9825966 | 867..994 | 100 | -> | Plus |
| arm_3L | 9826028..9826115 | 995..1082 | 100 | | Plus |
BS14077.pep Sequence
Translation from 16 to 1083
> BS14077.pep
MAALQRKLVHKQFNSPMGLYSQENVKATLNRELKAFGGEGIEVDDQITKP
LNLANSAVLRAVEEEEQQAKCGYKRVAWPPASEERIIREFTPQPQTQSPA
PGAGGYYPQAHAPTAAAAAPPQQQQYGAPSYDGQQPGAQWQQQQQQQQVP
QQQYQPQSQAQAPYQPPQWNQPQQQQQQPSYQASPYQQQQQQQPSYYPQQ
NGGSTYAQPPYNSYSQPQLPYSQDQTDLQQQQQQQQQQYPGAYAGQDSYR
GASPGIITLRKEAPVSQKPAPVYTSQPAAVSYQGGSKLRGDLKWPPPEYK
EAAARENEERRQLALGPVCRPRRVNRDYTPFFAKHQLNNGYPSYKVPPGT
QHIFG*
BS14077.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43897-PH | 355 | CG43897-PH | 1..355 | 1..355 | 1911 | 100 | Plus |
| CG43897-PG | 354 | CG43897-PG | 1..354 | 1..355 | 1894 | 99.7 | Plus |
| CG43897-PF | 354 | CG43897-PF | 1..354 | 1..355 | 1894 | 99.7 | Plus |
| CG43897-PE | 315 | CG43897-PE | 2..315 | 41..355 | 1691 | 99.7 | Plus |
| CG43897-PQ | 299 | CG43897-PQ | 17..299 | 72..355 | 1539 | 99.6 | Plus |
