Clone BS14078 Report

Search the DGRC for BS14078

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:140
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptMFS16-RB
Protein status:BS14078.pep: full length peptide match
Sequenced Size:1733

Clone Sequence Records

BS14078.complete Sequence

1733 bp assembled on 2009-12-07

GenBank Submission: KX800424

> BS14078.complete
GAAGTTATCAGTCGACATGAGGACAAGTGAACAGAAAAGTAGCTGGCATT
ACTCGCAACCGAAACGGATTCGGGAACCCAGCCACCTGGACGAGCAGCAC
TTGCACCTCGCCCACTGTCCGCGCCGGTCGATGAGAGCTTCACTGGGATT
GGGCAGAACGCGAAAGATGAGCAATAACTACAACGACGTGCCATTCGGCA
TCCGGGCTGTGCAGCGGCTGTCCCGACAATGCTGCACCCGCTTCCATGCC
CGCAGAGATTTGCTCTACAAGATGTCAGTGTTTGTGCTAACTTTCCTGGC
CTACGCCTGCTATCACATGTGCCGCAAGCCCATCTCCGTAGTCAAGTCGG
TGCTGCAAGGAAACTGTTCCACAGCGCTGGCTGCATCGGGTCAGGATTGT
GGATATGCGCCCTTTGATGTTCCCGATGCCACCACACTCTTTGGAATGCT
GGACTCGGCCTTCCTCTTCTCCTATGCCATCGCTATGTTCGCTTCTGGTT
TCGTGGCGGAACGCGTTTCCCTGCGATACTTCTTGTCCATGGGCATGATC
CTCACCGGAGTGTTCACTTACATGTTCGGCATTGCTCGCACCTCCAATAT
CCATAGTTTGTGGTATTTCATAATAGTGCAAATATTCGCTGGCATCTTCC
AGACGACCGGATGGCCAGGTGTAGTGGCCCTCGTGGGTCGTTGGTTTGGA
AAGTCGAAACGCGGGCTCATTTTTGGTATATGGAACAGTCATACGTCTAT
TGGAAACATTCTTGGCACGCTGATAGCGGCGCATTATGTGGAATCCGATT
GGGCGCTGTCGTTTGTGGTACCCGGCATTATCATTGCAGCCGTTGGATTT
TTACTCTTCCTTTTCCTAGTGGATCAGCCGGAGATTGTGGGCTGTTATCC
ACAAGCCGGACAGCATGAGCGTCGCGTGGCCAACGAGTCTGATGTGGAAC
AGGACGACGAGGAGCAGGTGCGCCATAACGATGCGGAAATCAACTATAGA
TCTGCTCCCACCGAACGTACTCCAATCCTTCCACGATCTCAACCAGAGGC
GGTGCCAAGGGGTCGCGGACGTCCCATCAGTCTGATCGATGCTTTATTCA
TACCCGGTGTGGTAGAGTTTTCGCTGTGTTTGTTCTTTACCAAGCTGGTG
AGCTACACCTTCATGTACTGGCTGCCACTTTACATACAAAAATCCAGCAC
ATTGGGTCCAGAACTGTCCGCTGATTTGTCCACTCTTTTCGATGTGGGTG
GTATTTTGGGTGCAATAGCTGCGGGCTATCTATCAGATGTGAGCGGAATG
TCGGCCACCGTCTGCACAGGCATGTTGTTCGTTGCCTCGCCCATTCTGCT
GATGTATCAACAATATGGTGCATTGTCGATGACAATCAGCATAGTGCTCT
TGATTGTGGTCGGCATCTTTGTGAACGGACCATATGCCCTGATTACAACC
TCTGTAAGTGCAGAGCTGGGCCAGCACAGCTCCTTGGAGGGAAATGCCAA
TGCTCTGGCCACGGTGACGGCCATTATCGATGGTACTGGGTCAATCGGAG
CGGCAGTTGGTCCACTGCTTGCCGGCCTTATCTCCACCGCCGGATGGCAG
TATGTCTTCCACATGCTCATCGCTGCCGACATCATTGCCATGGTGCTGCT
GGGGCGACTGGTCTTCAAGGAGTTCGCTGCACTGCGTCGTGCATCGCATC
GTATTCGGATTGAATAGAAGCTTTCTAGACCAT

BS14078.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
MFS16-RB 1701 CG10069-PB 1..1701 17..1717 8505 100 Plus
MFS16-RD 1587 CG10069-PD 1..1587 131..1717 7935 100 Plus
MFS16-RC 1587 CG10069-PC 1..1587 131..1717 7935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:17:10
Subject Length Description Subject Range Query Range Score Percent Strand
MFS16-RB 2399 CG10069-RB 246..1946 17..1717 8505 100 Plus
MFS16-RD 2281 CG10069-RD 150..1828 39..1717 8395 100 Plus
MFS16-RC 2563 CG10069-RC 432..2110 39..1717 8395 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:17:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21283542..21284112 416..986 2855 100 Plus
2R 25286936 2R 21284855..21285226 1346..1717 1860 100 Plus
2R 25286936 2R 21282987..21283212 39..264 1130 100 Plus
2R 25286936 2R 21284381..21284593 985..1197 1065 100 Plus
2R 25286936 2R 21283331..21283482 265..416 760 100 Plus
2R 25286936 2R 21284650..21284798 1197..1345 745 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:17:07 has no hits.

BS14078.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:50 Download gff for BS14078.complete
Subject Subject Range Query Range Percent Splice Strand
CG10069-RB 167..1867 17..1717 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:34 Download gff for BS14078.complete
Subject Subject Range Query Range Percent Splice Strand
MFS16-RB 246..1946 17..1717 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:07:25 Download gff for BS14078.complete
Subject Subject Range Query Range Percent Splice Strand
CG10069-RB 167..1867 17..1717 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:07 Download gff for BS14078.complete
Subject Subject Range Query Range Percent Splice Strand
MFS16-RB 246..1946 17..1717 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:07 Download gff for BS14078.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21282543..21282564 17..38 100 -> Plus
2R 21282987..21283212 39..264 100 -> Plus
2R 21283331..21283482 265..416 100 -> Plus
2R 21283543..21284111 417..985 100 -> Plus
2R 21284382..21284592 986..1196 100 -> Plus
2R 21284650..21284798 1197..1345 100 -> Plus
2R 21284855..21285226 1346..1717 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:34 Download gff for BS14078.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17170048..17170069 17..38 100 -> Plus
arm_2R 17170492..17170717 39..264 100 -> Plus
arm_2R 17170836..17170987 265..416 100 -> Plus
arm_2R 17171048..17171616 417..985 100 -> Plus
arm_2R 17171887..17172097 986..1196 100 -> Plus
arm_2R 17172155..17172303 1197..1345 100 -> Plus
arm_2R 17172360..17172731 1346..1717 100   Plus

BS14078.3prime Sequence

606 bp (509 high quality bases) assembled on 2006-10-13

> BS14078.3prime
ATGGTCTAGAAAGCTTCTATTCAATCCGAATACGATGCGATGCACGACGC
AGTGCAGCGAACTCCTTGAAGACCAGTCGCCCCAGCAGCACCATGGCAAT
GATGTCGGCAGCGATGAGCATGTGGAAGACATACTGCCATCCGGCGGTGG
AGATAAGGCCGGCAAGCAGTGGACCAACTGCCGCTCCGATTGACCCAGTA
CCATCGATAATGGCCGTCACCGTGGCCAGAGCATTGGCATTTCCCTCCAA
GGAGCTGTGCTGGCCCAGCTCTGCACTTACAGAGGTTGTAATCAGGGCAT
ATGGTCCGTTCACAAAGATGCCGACCACAATCAAGAGCACTATGCTGATT
GTCATCGACAATGCACCATATTGTTGATACATCAGCAGAATGGGCGAGGC
ATTGAACAACATGCCTGTGCAGACGGTGGCCGACATTCCGCTCACATCTG
ATAGATAGCCCGCAGCTATTGCACCCAAAATACCACCCACATCGAAAAGA
GTGGACAAATCAGCGGACAGTTCTGGACCCAATGTGCTGGATTTTTGTAT
GTAAAGTGGCAGCCAGTACATGAAGGTGTAGCTCAACAGCTTGGTAAAGA
AACAAC

BS14078.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10069-PA 1587 CG10069-RA 1003..1587 601..17 2850 99.4 Minus
CG10069-PB 1701 CG10069-RB 1117..1701 601..17 2850 99.4 Minus
CG10069-PC 1587 CG10069-RC 1003..1587 601..17 2850 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
MFS16-RD 2281 CG10069-RD 1244..1828 601..17 2880 99.5 Minus
MFS16-RC 2563 CG10069-RC 1526..2110 601..17 2880 99.5 Minus
MFS16-RB 2399 CG10069-RB 1362..1946 601..17 2880 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21284855..21285226 388..17 1860 100 Minus
2R 25286936 2R 21284650..21284798 537..389 715 98.7 Minus
2R 25286936 2R 21284529..21284593 601..537 310 98.5 Minus
Blast to na_te.dros performed on 2015-02-10 18:26:40 has no hits.

BS14078.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:31 Download gff for BS14078.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10069-PC 998..1587 17..606 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:53:01 Download gff for BS14078.3prime
Subject Subject Range Query Range Percent Splice Strand
MFS16-RB 1357..1949 14..606 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:54:15 Download gff for BS14078.3prime
Subject Subject Range Query Range Percent Splice Strand
MFS16-RB 1357..1949 14..606 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:54:15 Download gff for BS14078.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21284524..21284592 538..606 95 -> Minus
2R 21284650..21284798 389..537 98 -> Minus
2R 21284855..21285229 14..388 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:53:01 Download gff for BS14078.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17172029..17172097 538..606 95 -> Minus
arm_2R 17172155..17172303 389..537 98 -> Minus
arm_2R 17172360..17172734 14..388 99   Minus

BS14078.5prime Sequence

597 bp (559 high quality bases) assembled on 2006-10-13

> BS14078.5prime
GAAGTTATCAGTCGACATGAGGACAAGTGAACAGAAAAGTAGCTGGCATT
ACTCGCAACCGAAACGGATTCGGGAACCCAGCCACCTGGACGAGCAGCAC
TTGCACCTCGCCCACTGTCCGCGCCGGTCGATGAGAGCTTCACTGGGATT
GGGCAGAACGCGAAAGATGAGCAATAACTACAACGACGTGCCATTCGGCA
TCCGGGCTGTGCAGCGGCTGTCCCGACAATGCTGCACCCGCTTCCATGCC
CGCAGAGATTTGCTCTACAAGATGTCAGTGTTTGTGCTAACTTTCCTGGC
CTACGCCTGCTATCACATGTGCCGCAAGCCCATCTCCGTAGTCAAGTCGG
TGCTGCAAGGAAACTGTTCCACAGCGCTGGCTGCATCGGGTCAGGATTGT
GGATATGCGCCCTTTGATGTTCCCGATGCCACCACACTCTTTGGAATGCT
GGACTCGGCCTTCCTCTTCTCCTATGCCATCGCTATGTTCGCTTCTGGTT
TCGTGGCGGAACGCGTTTCCCTGCGATACTTCTTGTCCATGGGCATGATC
CTCACCGGAGTGGTCACTTACATGTTCGGCATTGCTCGCACCTCCAA

BS14078.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:26:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG10069-PB 1701 CG10069-RB 1..581 17..597 2880 99.8 Plus
CG10069-PA 1587 CG10069-RA 1..467 131..597 2310 99.7 Plus
CG10069-PC 1587 CG10069-RC 1..467 131..597 2310 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:12:45
Subject Length Description Subject Range Query Range Score Percent Strand
MFS16-RB 2399 CG10069-RB 246..826 17..597 2890 99.8 Plus
MFS16-RD 2281 CG10069-RD 150..708 39..597 2780 99.8 Plus
MFS16-RC 2563 CG10069-RC 432..990 39..597 2780 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21282987..21283212 39..264 1130 100 Plus
2R 25286936 2R 21283542..21283723 416..597 895 99.5 Plus
2R 25286936 2R 21283331..21283482 265..416 760 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:12:40 has no hits.

BS14078.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:31 Download gff for BS14078.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10069-PB 1..579 17..595 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:47:42 Download gff for BS14078.5prime
Subject Subject Range Query Range Percent Splice Strand
MFS16-RB 246..824 17..595 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:05:07 Download gff for BS14078.5prime
Subject Subject Range Query Range Percent Splice Strand
MFS16-RB 246..824 17..595 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:05:07 Download gff for BS14078.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21283331..21283482 265..416 100 -> Plus
2R 21283543..21283721 417..595 99   Plus
2R 21282543..21282564 17..38 100 -> Plus
2R 21282987..21283212 39..264 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:47:42 Download gff for BS14078.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17170048..17170069 17..38 100 -> Plus
arm_2R 17170492..17170717 39..264 100 -> Plus
arm_2R 17170836..17170987 265..416 100 -> Plus
arm_2R 17171048..17171226 417..595 99   Plus

BS14078.pep Sequence

Translation from 16 to 1716

> BS14078.pep
MRTSEQKSSWHYSQPKRIREPSHLDEQHLHLAHCPRRSMRASLGLGRTRK
MSNNYNDVPFGIRAVQRLSRQCCTRFHARRDLLYKMSVFVLTFLAYACYH
MCRKPISVVKSVLQGNCSTALAASGQDCGYAPFDVPDATTLFGMLDSAFL
FSYAIAMFASGFVAERVSLRYFLSMGMILTGVFTYMFGIARTSNIHSLWY
FIIVQIFAGIFQTTGWPGVVALVGRWFGKSKRGLIFGIWNSHTSIGNILG
TLIAAHYVESDWALSFVVPGIIIAAVGFLLFLFLVDQPEIVGCYPQAGQH
ERRVANESDVEQDDEEQVRHNDAEINYRSAPTERTPILPRSQPEAVPRGR
GRPISLIDALFIPGVVEFSLCLFFTKLVSYTFMYWLPLYIQKSSTLGPEL
SADLSTLFDVGGILGAIAAGYLSDVSGMSATVCTGMLFVASPILLMYQQY
GALSMTISIVLLIVVGIFVNGPYALITTSVSAELGQHSSLEGNANALATV
TAIIDGTGSIGAAVGPLLAGLISTAGWQYVFHMLIAADIIAMVLLGRLVF
KEFAALRRASHRIRIE*

BS14078.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:11:33
Subject Length Description Subject Range Query Range Score Percent Strand
MFS16-PB 566 CG10069-PB 1..566 1..566 2915 100 Plus
MFS16-PD 528 CG10069-PD 1..528 39..566 2702 100 Plus
MFS16-PC 528 CG10069-PC 1..528 39..566 2702 100 Plus
MFS16-PA 528 CG10069-PA 1..528 39..566 2702 100 Plus