Clone Sequence Records
BS14078.complete Sequence
1733 bp assembled on 2009-12-07
GenBank Submission: KX800424
> BS14078.complete
GAAGTTATCAGTCGACATGAGGACAAGTGAACAGAAAAGTAGCTGGCATT
ACTCGCAACCGAAACGGATTCGGGAACCCAGCCACCTGGACGAGCAGCAC
TTGCACCTCGCCCACTGTCCGCGCCGGTCGATGAGAGCTTCACTGGGATT
GGGCAGAACGCGAAAGATGAGCAATAACTACAACGACGTGCCATTCGGCA
TCCGGGCTGTGCAGCGGCTGTCCCGACAATGCTGCACCCGCTTCCATGCC
CGCAGAGATTTGCTCTACAAGATGTCAGTGTTTGTGCTAACTTTCCTGGC
CTACGCCTGCTATCACATGTGCCGCAAGCCCATCTCCGTAGTCAAGTCGG
TGCTGCAAGGAAACTGTTCCACAGCGCTGGCTGCATCGGGTCAGGATTGT
GGATATGCGCCCTTTGATGTTCCCGATGCCACCACACTCTTTGGAATGCT
GGACTCGGCCTTCCTCTTCTCCTATGCCATCGCTATGTTCGCTTCTGGTT
TCGTGGCGGAACGCGTTTCCCTGCGATACTTCTTGTCCATGGGCATGATC
CTCACCGGAGTGTTCACTTACATGTTCGGCATTGCTCGCACCTCCAATAT
CCATAGTTTGTGGTATTTCATAATAGTGCAAATATTCGCTGGCATCTTCC
AGACGACCGGATGGCCAGGTGTAGTGGCCCTCGTGGGTCGTTGGTTTGGA
AAGTCGAAACGCGGGCTCATTTTTGGTATATGGAACAGTCATACGTCTAT
TGGAAACATTCTTGGCACGCTGATAGCGGCGCATTATGTGGAATCCGATT
GGGCGCTGTCGTTTGTGGTACCCGGCATTATCATTGCAGCCGTTGGATTT
TTACTCTTCCTTTTCCTAGTGGATCAGCCGGAGATTGTGGGCTGTTATCC
ACAAGCCGGACAGCATGAGCGTCGCGTGGCCAACGAGTCTGATGTGGAAC
AGGACGACGAGGAGCAGGTGCGCCATAACGATGCGGAAATCAACTATAGA
TCTGCTCCCACCGAACGTACTCCAATCCTTCCACGATCTCAACCAGAGGC
GGTGCCAAGGGGTCGCGGACGTCCCATCAGTCTGATCGATGCTTTATTCA
TACCCGGTGTGGTAGAGTTTTCGCTGTGTTTGTTCTTTACCAAGCTGGTG
AGCTACACCTTCATGTACTGGCTGCCACTTTACATACAAAAATCCAGCAC
ATTGGGTCCAGAACTGTCCGCTGATTTGTCCACTCTTTTCGATGTGGGTG
GTATTTTGGGTGCAATAGCTGCGGGCTATCTATCAGATGTGAGCGGAATG
TCGGCCACCGTCTGCACAGGCATGTTGTTCGTTGCCTCGCCCATTCTGCT
GATGTATCAACAATATGGTGCATTGTCGATGACAATCAGCATAGTGCTCT
TGATTGTGGTCGGCATCTTTGTGAACGGACCATATGCCCTGATTACAACC
TCTGTAAGTGCAGAGCTGGGCCAGCACAGCTCCTTGGAGGGAAATGCCAA
TGCTCTGGCCACGGTGACGGCCATTATCGATGGTACTGGGTCAATCGGAG
CGGCAGTTGGTCCACTGCTTGCCGGCCTTATCTCCACCGCCGGATGGCAG
TATGTCTTCCACATGCTCATCGCTGCCGACATCATTGCCATGGTGCTGCT
GGGGCGACTGGTCTTCAAGGAGTTCGCTGCACTGCGTCGTGCATCGCATC
GTATTCGGATTGAATAGAAGCTTTCTAGACCAT
BS14078.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:17:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MFS16-RB | 1701 | CG10069-PB | 1..1701 | 17..1717 | 8505 | 100 | Plus |
MFS16-RD | 1587 | CG10069-PD | 1..1587 | 131..1717 | 7935 | 100 | Plus |
MFS16-RC | 1587 | CG10069-PC | 1..1587 | 131..1717 | 7935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:17:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MFS16-RB | 2399 | CG10069-RB | 246..1946 | 17..1717 | 8505 | 100 | Plus |
MFS16-RD | 2281 | CG10069-RD | 150..1828 | 39..1717 | 8395 | 100 | Plus |
MFS16-RC | 2563 | CG10069-RC | 432..2110 | 39..1717 | 8395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:17:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21283542..21284112 | 416..986 | 2855 | 100 | Plus |
2R | 25286936 | 2R | 21284855..21285226 | 1346..1717 | 1860 | 100 | Plus |
2R | 25286936 | 2R | 21282987..21283212 | 39..264 | 1130 | 100 | Plus |
2R | 25286936 | 2R | 21284381..21284593 | 985..1197 | 1065 | 100 | Plus |
2R | 25286936 | 2R | 21283331..21283482 | 265..416 | 760 | 100 | Plus |
2R | 25286936 | 2R | 21284650..21284798 | 1197..1345 | 745 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:17:07 has no hits.
BS14078.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:50 Download gff for
BS14078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10069-RB | 167..1867 | 17..1717 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:34 Download gff for
BS14078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MFS16-RB | 246..1946 | 17..1717 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:07:25 Download gff for
BS14078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10069-RB | 167..1867 | 17..1717 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:07 Download gff for
BS14078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MFS16-RB | 246..1946 | 17..1717 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:07 Download gff for
BS14078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21282543..21282564 | 17..38 | 100 | -> | Plus |
2R | 21282987..21283212 | 39..264 | 100 | -> | Plus |
2R | 21283331..21283482 | 265..416 | 100 | -> | Plus |
2R | 21283543..21284111 | 417..985 | 100 | -> | Plus |
2R | 21284382..21284592 | 986..1196 | 100 | -> | Plus |
2R | 21284650..21284798 | 1197..1345 | 100 | -> | Plus |
2R | 21284855..21285226 | 1346..1717 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:34 Download gff for
BS14078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17170048..17170069 | 17..38 | 100 | -> | Plus |
arm_2R | 17170492..17170717 | 39..264 | 100 | -> | Plus |
arm_2R | 17170836..17170987 | 265..416 | 100 | -> | Plus |
arm_2R | 17171048..17171616 | 417..985 | 100 | -> | Plus |
arm_2R | 17171887..17172097 | 986..1196 | 100 | -> | Plus |
arm_2R | 17172155..17172303 | 1197..1345 | 100 | -> | Plus |
arm_2R | 17172360..17172731 | 1346..1717 | 100 | | Plus |
BS14078.3prime Sequence
606 bp (509 high quality bases) assembled on 2006-10-13
> BS14078.3prime
ATGGTCTAGAAAGCTTCTATTCAATCCGAATACGATGCGATGCACGACGC
AGTGCAGCGAACTCCTTGAAGACCAGTCGCCCCAGCAGCACCATGGCAAT
GATGTCGGCAGCGATGAGCATGTGGAAGACATACTGCCATCCGGCGGTGG
AGATAAGGCCGGCAAGCAGTGGACCAACTGCCGCTCCGATTGACCCAGTA
CCATCGATAATGGCCGTCACCGTGGCCAGAGCATTGGCATTTCCCTCCAA
GGAGCTGTGCTGGCCCAGCTCTGCACTTACAGAGGTTGTAATCAGGGCAT
ATGGTCCGTTCACAAAGATGCCGACCACAATCAAGAGCACTATGCTGATT
GTCATCGACAATGCACCATATTGTTGATACATCAGCAGAATGGGCGAGGC
ATTGAACAACATGCCTGTGCAGACGGTGGCCGACATTCCGCTCACATCTG
ATAGATAGCCCGCAGCTATTGCACCCAAAATACCACCCACATCGAAAAGA
GTGGACAAATCAGCGGACAGTTCTGGACCCAATGTGCTGGATTTTTGTAT
GTAAAGTGGCAGCCAGTACATGAAGGTGTAGCTCAACAGCTTGGTAAAGA
AACAAC
BS14078.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:26:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10069-PA | 1587 | CG10069-RA | 1003..1587 | 601..17 | 2850 | 99.4 | Minus |
CG10069-PB | 1701 | CG10069-RB | 1117..1701 | 601..17 | 2850 | 99.4 | Minus |
CG10069-PC | 1587 | CG10069-RC | 1003..1587 | 601..17 | 2850 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MFS16-RD | 2281 | CG10069-RD | 1244..1828 | 601..17 | 2880 | 99.5 | Minus |
MFS16-RC | 2563 | CG10069-RC | 1526..2110 | 601..17 | 2880 | 99.5 | Minus |
MFS16-RB | 2399 | CG10069-RB | 1362..1946 | 601..17 | 2880 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21284855..21285226 | 388..17 | 1860 | 100 | Minus |
2R | 25286936 | 2R | 21284650..21284798 | 537..389 | 715 | 98.7 | Minus |
2R | 25286936 | 2R | 21284529..21284593 | 601..537 | 310 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:26:40 has no hits.
BS14078.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:31 Download gff for
BS14078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10069-PC | 998..1587 | 17..606 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:53:01 Download gff for
BS14078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MFS16-RB | 1357..1949 | 14..606 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:54:15 Download gff for
BS14078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MFS16-RB | 1357..1949 | 14..606 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:54:15 Download gff for
BS14078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21284524..21284592 | 538..606 | 95 | -> | Minus |
2R | 21284650..21284798 | 389..537 | 98 | -> | Minus |
2R | 21284855..21285229 | 14..388 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:53:01 Download gff for
BS14078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17172029..17172097 | 538..606 | 95 | -> | Minus |
arm_2R | 17172155..17172303 | 389..537 | 98 | -> | Minus |
arm_2R | 17172360..17172734 | 14..388 | 99 | | Minus |
BS14078.5prime Sequence
597 bp (559 high quality bases) assembled on 2006-10-13
> BS14078.5prime
GAAGTTATCAGTCGACATGAGGACAAGTGAACAGAAAAGTAGCTGGCATT
ACTCGCAACCGAAACGGATTCGGGAACCCAGCCACCTGGACGAGCAGCAC
TTGCACCTCGCCCACTGTCCGCGCCGGTCGATGAGAGCTTCACTGGGATT
GGGCAGAACGCGAAAGATGAGCAATAACTACAACGACGTGCCATTCGGCA
TCCGGGCTGTGCAGCGGCTGTCCCGACAATGCTGCACCCGCTTCCATGCC
CGCAGAGATTTGCTCTACAAGATGTCAGTGTTTGTGCTAACTTTCCTGGC
CTACGCCTGCTATCACATGTGCCGCAAGCCCATCTCCGTAGTCAAGTCGG
TGCTGCAAGGAAACTGTTCCACAGCGCTGGCTGCATCGGGTCAGGATTGT
GGATATGCGCCCTTTGATGTTCCCGATGCCACCACACTCTTTGGAATGCT
GGACTCGGCCTTCCTCTTCTCCTATGCCATCGCTATGTTCGCTTCTGGTT
TCGTGGCGGAACGCGTTTCCCTGCGATACTTCTTGTCCATGGGCATGATC
CTCACCGGAGTGGTCACTTACATGTTCGGCATTGCTCGCACCTCCAA
BS14078.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:26:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10069-PB | 1701 | CG10069-RB | 1..581 | 17..597 | 2880 | 99.8 | Plus |
CG10069-PA | 1587 | CG10069-RA | 1..467 | 131..597 | 2310 | 99.7 | Plus |
CG10069-PC | 1587 | CG10069-RC | 1..467 | 131..597 | 2310 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:12:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MFS16-RB | 2399 | CG10069-RB | 246..826 | 17..597 | 2890 | 99.8 | Plus |
MFS16-RD | 2281 | CG10069-RD | 150..708 | 39..597 | 2780 | 99.8 | Plus |
MFS16-RC | 2563 | CG10069-RC | 432..990 | 39..597 | 2780 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:12:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21282987..21283212 | 39..264 | 1130 | 100 | Plus |
2R | 25286936 | 2R | 21283542..21283723 | 416..597 | 895 | 99.5 | Plus |
2R | 25286936 | 2R | 21283331..21283482 | 265..416 | 760 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:12:40 has no hits.
BS14078.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:31 Download gff for
BS14078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10069-PB | 1..579 | 17..595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:47:42 Download gff for
BS14078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MFS16-RB | 246..824 | 17..595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:05:07 Download gff for
BS14078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MFS16-RB | 246..824 | 17..595 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:05:07 Download gff for
BS14078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21283331..21283482 | 265..416 | 100 | -> | Plus |
2R | 21283543..21283721 | 417..595 | 99 | | Plus |
2R | 21282543..21282564 | 17..38 | 100 | -> | Plus |
2R | 21282987..21283212 | 39..264 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:47:42 Download gff for
BS14078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17170048..17170069 | 17..38 | 100 | -> | Plus |
arm_2R | 17170492..17170717 | 39..264 | 100 | -> | Plus |
arm_2R | 17170836..17170987 | 265..416 | 100 | -> | Plus |
arm_2R | 17171048..17171226 | 417..595 | 99 | | Plus |
BS14078.pep Sequence
Translation from 16 to 1716
> BS14078.pep
MRTSEQKSSWHYSQPKRIREPSHLDEQHLHLAHCPRRSMRASLGLGRTRK
MSNNYNDVPFGIRAVQRLSRQCCTRFHARRDLLYKMSVFVLTFLAYACYH
MCRKPISVVKSVLQGNCSTALAASGQDCGYAPFDVPDATTLFGMLDSAFL
FSYAIAMFASGFVAERVSLRYFLSMGMILTGVFTYMFGIARTSNIHSLWY
FIIVQIFAGIFQTTGWPGVVALVGRWFGKSKRGLIFGIWNSHTSIGNILG
TLIAAHYVESDWALSFVVPGIIIAAVGFLLFLFLVDQPEIVGCYPQAGQH
ERRVANESDVEQDDEEQVRHNDAEINYRSAPTERTPILPRSQPEAVPRGR
GRPISLIDALFIPGVVEFSLCLFFTKLVSYTFMYWLPLYIQKSSTLGPEL
SADLSTLFDVGGILGAIAAGYLSDVSGMSATVCTGMLFVASPILLMYQQY
GALSMTISIVLLIVVGIFVNGPYALITTSVSAELGQHSSLEGNANALATV
TAIIDGTGSIGAAVGPLLAGLISTAGWQYVFHMLIAADIIAMVLLGRLVF
KEFAALRRASHRIRIE*
BS14078.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:11:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MFS16-PB | 566 | CG10069-PB | 1..566 | 1..566 | 2915 | 100 | Plus |
MFS16-PD | 528 | CG10069-PD | 1..528 | 39..566 | 2702 | 100 | Plus |
MFS16-PC | 528 | CG10069-PC | 1..528 | 39..566 | 2702 | 100 | Plus |
MFS16-PA | 528 | CG10069-PA | 1..528 | 39..566 | 2702 | 100 | Plus |