Clone BS14079 Report

Search the DGRC for BS14079

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:140
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCanB2-RA
Protein status:BS14079.pep: full length peptide match
Sequenced Size:545

Clone Sequence Records

BS14079.complete Sequence

545 bp assembled on 2010-02-09

GenBank Submission: KX801409

> BS14079.complete
GAAGTTATCAGTCGACATGGGAAATGAAACATCACTGCCCATGGAAATGT
GTTCCAATTTCGACGCCGACGAGATCCGGCGGCTGGGCAAACGTTTCCGG
AAACTGGACCTGGACAATTCGGGCGCGCTGAGCGTGGACGAGTTCATGTC
GCTGCCGGAGCTGCAACAGAATCCGCTGGTGCAGCGCGTGATCGACATTT
TCGACGCGGACGGCAACGGCGAGGTGGACTTCAAGGAGTTCATCCAGGGC
GTGTCGCAGTTCAGCGTCAAGGGCGACAAGCTGTCCAAGTTGCGCTTCGC
CTTTCGCATCTATGACATGGACAACGATGGTTACATTTCCAATGGCGAAC
TGTTTCAGGTTTTAAAGATGATGGTAGGCAATAATCTGAAGGACACGCAA
CTGCAGCAGATTGTGGACAAGACGATCGGATTCGCGGATAAGGATGAGGA
TGGCAAGATCTCGTTCGATGAGTTCTGCTCTGTGGTCGGCAACACGGACA
TTCACAAGAAGATGGTAGTCGATGTCTAAAAGCTTTCTAGACCAT

BS14079.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:23:42
Subject Length Description Subject Range Query Range Score Percent Strand
CanB2-RB 513 CG11217-PB 1..513 17..529 2565 100 Plus
CanB2-RA 513 CG11217-PA 1..513 17..529 2565 100 Plus
CanB-RB 513 CG4209-PB 1..509 17..525 1405 85.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:23:42
Subject Length Description Subject Range Query Range Score Percent Strand
CanB2-RB 2061 CG11217-RB 257..771 17..531 2575 100 Plus
CanB2-RA 1143 CG11217-RA 257..771 17..531 2575 100 Plus
CanB-RB 1148 CG4209-RB 103..612 16..525 1410 85.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7787234..7787533 60..359 1500 100 Plus
X 23542271 X 5333404..5333913 16..525 1410 85.1 Plus
2R 25286936 2R 7787589..7787763 357..531 875 100 Plus
2R 25286936 2R 7786499..7786539 19..59 205 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:23:41 has no hits.

BS14079.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:06 Download gff for BS14079.complete
Subject Subject Range Query Range Percent Splice Strand
CanB2-RA 1..513 17..529 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:50 Download gff for BS14079.complete
Subject Subject Range Query Range Percent Splice Strand
CanB2-RA 255..765 17..527 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:25 Download gff for BS14079.complete
Subject Subject Range Query Range Percent Splice Strand
CanB2-RA 257..767 17..527 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:49:07 Download gff for BS14079.complete
Subject Subject Range Query Range Percent Splice Strand
CanB2-RA 255..765 17..527 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:27:35 Download gff for BS14079.complete
Subject Subject Range Query Range Percent Splice Strand
CanB2-RA 257..767 17..527 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:27:35 Download gff for BS14079.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7787591..7787759 359..527 100   Plus
2R 7786498..7786539 17..59 97 -> Plus
2R 7787234..7787532 60..358 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:25 Download gff for BS14079.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3674003..3674044 17..59 97 -> Plus
arm_2R 3674739..3675037 60..358 100 -> Plus
arm_2R 3675096..3675264 359..527 100   Plus

BS14079.3prime Sequence

524 bp (482 high quality bases) assembled on 2006-10-13

> BS14079.3prime
ATGGTCTAGAAAGCTTTTAGACATCGACTACCATCTTCTTGTGAATGTCC
GTGTTGCCGACCACAGAGCAGAACTCATCGAACGAGATCTTGCCATCCTC
ATCCTTATCCGCGAATCCGATCGTCTTGTCCACAATCTGCTGCAGTTGCG
TGTCCTTCAGATTATTGCCTACCATCATCTTTAAAACCTGAAACAGTTCG
CCATTGGAAATGTAACCATCGTTGTCCATGTCATAGATGCGAAAGGCGAA
GCGCAACTTGGACAGCTTGTCGCCCTTGACGCTGAACTGCGACACGCCCT
GGATGAACTCCTTGAAGTCCACCTCGCCGTTGCCGTCCGCGTCGAAAATG
TCGATCACGCGCTGCACCAGCGGATTCTGTTGCAGCTCCGGCAGCGACAT
GAACTCGTCCACGCTCAGCGCGCCCGAATTGTCCAGGTCCAGTTTCCGGA
AACGTTTGCCCAGCCGCCGGATCTCGTCGGCGTCGAAATTGGAACACATT
TTCCTGGGCAGTGATGTTTCATTT

BS14079.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG11217-PA 513 CanB2-RA 6..513 524..17 2490 99.6 Minus
CG4209-PA 513 CanB-RA 31..251 499..279 380 86.8 Minus
CG4209-PA 513 CanB-RA 418..509 112..21 185 88 Minus
CG4209-PA 513 CanB-RA 349..407 181..123 170 91.5 Minus
CG4209-PA 513 CanB-RA 256..320 274..210 150 89.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:03:33
Subject Length Description Subject Range Query Range Score Percent Strand
CanB2-RB 2061 CG11217-RB 262..771 524..15 2520 99.6 Minus
CanB2-RA 1143 CG11217-RA 262..771 524..15 2520 99.6 Minus
CanB-RB 1148 CG4209-RB 122..612 511..21 1360 85.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:03:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7787234..7787533 486..187 1500 100 Minus
X 23542271 X 5333423..5333913 511..21 1360 85.1 Minus
2R 25286936 2R 7787589..7787763 189..15 875 100 Minus
Blast to na_te.dros performed on 2015-02-11 19:03:31 has no hits.

BS14079.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:32 Download gff for BS14079.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11217-PA 6..513 17..524 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:09:22 Download gff for BS14079.3prime
Subject Subject Range Query Range Percent Splice Strand
CanB2-RA 262..771 15..524 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:58:41 Download gff for BS14079.3prime
Subject Subject Range Query Range Percent Splice Strand
CanB2-RA 262..771 15..524 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:58:41 Download gff for BS14079.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7786502..7786539 487..524 94 -> Minus
2R 7787234..7787532 188..486 100 -> Minus
2R 7787591..7787763 15..187 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:09:22 Download gff for BS14079.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3674007..3674044 487..524 94 -> Minus
arm_2R 3674739..3675037 188..486 100 -> Minus
arm_2R 3675096..3675268 15..187 100   Minus

BS14079.5prime Sequence

543 bp (501 high quality bases) assembled on 2006-10-13

> BS14079.5prime
GAAGTTATCAGTCGACATGGGAAATGAAACATCACTGCCCATGGAAATGT
GTTCCAATTTCGACGCCGACGAGATCCGGCGGCTGGGCAAACGTTTCCGG
AAACTGGACCTGGACAATTCGGGCGCGCTGAGCGTGGACGAGTTCATGTC
GCTGCCGGAGCTGCAACAGAATCCGCTGGTGCAGCGCGTGATCGACATTT
TCGACGCGGACGGCAACGGCGAGGTGGACTTCAAGGAGTTCATCCAGGGC
GTGTCGCAGTTCAGCGTCAAGGGCGACAAGCTGTCCAAGTTGCGCTTCGC
CTTTCGCATCTATGACATGGACAACGATGGTTACATTTCCAATGGCGAAC
TGTTTCAGGTTTTAAAGATGATGGTAGGCAATAATCTGAAGGACACGCAA
CTGCAGCAGATTGTGGACAAGACGATCGGATTCGCGGATAAGGATGAGGA
TGGCAAGATCTCGTTCGATGAGTTCTGCTCTGTGGTCGGCAACACGGACA
TTCACAAGAAGATGGTAGTCGATGTCTAAAAGCTTTCTAGACC

BS14079.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG11217-PA 513 CanB2-RA 1..513 17..529 2565 100 Plus
CG4209-PA 513 CanB-RA 19..251 35..267 415 87.1 Plus
CG4209-PA 513 CanB-RA 418..509 434..525 185 88 Plus
CG4209-PA 513 CanB-RA 349..407 365..423 170 91.5 Plus
CG4209-PA 513 CanB-RA 256..320 272..336 150 89.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
CanB2-RB 2061 CG11217-RB 257..771 17..531 2575 100 Plus
CanB2-RA 1143 CG11217-RA 257..771 17..531 2575 100 Plus
CanB-RB 1148 CG4209-RB 103..612 16..525 1410 85.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:12:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7787234..7787533 60..359 1500 100 Plus
X 23542271 X 5333404..5333913 16..525 1410 85.1 Plus
2R 25286936 2R 7787589..7787763 357..531 875 100 Plus
2R 25286936 2R 7786499..7786539 19..59 205 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:12:56 has no hits.

BS14079.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:32 Download gff for BS14079.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11217-PA 1..513 17..529 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:47:44 Download gff for BS14079.5prime
Subject Subject Range Query Range Percent Splice Strand
CanB2-RA 257..771 17..531 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:06:03 Download gff for BS14079.5prime
Subject Subject Range Query Range Percent Splice Strand
CanB2-RA 257..771 17..531 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:06:03 Download gff for BS14079.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7787234..7787532 60..358 100 -> Plus
2R 7787591..7787763 359..531 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:47:44 Download gff for BS14079.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3674739..3675037 60..358 100 -> Plus
arm_2R 3675096..3675268 359..531 100   Plus

BS14079.pep Sequence

Translation from 16 to 528

> BS14079.pep
MGNETSLPMEMCSNFDADEIRRLGKRFRKLDLDNSGALSVDEFMSLPELQ
QNPLVQRVIDIFDADGNGEVDFKEFIQGVSQFSVKGDKLSKLRFAFRIYD
MDNDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIGFADKDEDGKISF
DEFCSVVGNTDIHKKMVVDV*

BS14079.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:05:05
Subject Length Description Subject Range Query Range Score Percent Strand
CanB2-PB 170 CG11217-PB 1..170 1..170 874 100 Plus
CanB2-PA 170 CG11217-PA 1..170 1..170 874 100 Plus
CanB-PB 170 CG4209-PB 1..170 1..170 858 97.6 Plus
CanB-PA 170 CG4209-PA 1..170 1..170 858 97.6 Plus
elm-PB 189 CG2185-PB 1..185 1..168 308 38.9 Plus