Clone Sequence Records
BS14079.complete Sequence
545 bp assembled on 2010-02-09
GenBank Submission: KX801409
> BS14079.complete
GAAGTTATCAGTCGACATGGGAAATGAAACATCACTGCCCATGGAAATGT
GTTCCAATTTCGACGCCGACGAGATCCGGCGGCTGGGCAAACGTTTCCGG
AAACTGGACCTGGACAATTCGGGCGCGCTGAGCGTGGACGAGTTCATGTC
GCTGCCGGAGCTGCAACAGAATCCGCTGGTGCAGCGCGTGATCGACATTT
TCGACGCGGACGGCAACGGCGAGGTGGACTTCAAGGAGTTCATCCAGGGC
GTGTCGCAGTTCAGCGTCAAGGGCGACAAGCTGTCCAAGTTGCGCTTCGC
CTTTCGCATCTATGACATGGACAACGATGGTTACATTTCCAATGGCGAAC
TGTTTCAGGTTTTAAAGATGATGGTAGGCAATAATCTGAAGGACACGCAA
CTGCAGCAGATTGTGGACAAGACGATCGGATTCGCGGATAAGGATGAGGA
TGGCAAGATCTCGTTCGATGAGTTCTGCTCTGTGGTCGGCAACACGGACA
TTCACAAGAAGATGGTAGTCGATGTCTAAAAGCTTTCTAGACCAT
BS14079.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:23:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CanB2-RB | 513 | CG11217-PB | 1..513 | 17..529 | 2565 | 100 | Plus |
CanB2-RA | 513 | CG11217-PA | 1..513 | 17..529 | 2565 | 100 | Plus |
CanB-RB | 513 | CG4209-PB | 1..509 | 17..525 | 1405 | 85.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:23:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CanB2-RB | 2061 | CG11217-RB | 257..771 | 17..531 | 2575 | 100 | Plus |
CanB2-RA | 1143 | CG11217-RA | 257..771 | 17..531 | 2575 | 100 | Plus |
CanB-RB | 1148 | CG4209-RB | 103..612 | 16..525 | 1410 | 85.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:23:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7787234..7787533 | 60..359 | 1500 | 100 | Plus |
X | 23542271 | X | 5333404..5333913 | 16..525 | 1410 | 85.1 | Plus |
2R | 25286936 | 2R | 7787589..7787763 | 357..531 | 875 | 100 | Plus |
2R | 25286936 | 2R | 7786499..7786539 | 19..59 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:23:41 has no hits.
BS14079.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:06 Download gff for
BS14079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB2-RA | 1..513 | 17..529 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:50 Download gff for
BS14079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB2-RA | 255..765 | 17..527 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:25 Download gff for
BS14079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB2-RA | 257..767 | 17..527 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:49:07 Download gff for
BS14079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB2-RA | 255..765 | 17..527 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:27:35 Download gff for
BS14079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB2-RA | 257..767 | 17..527 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:27:35 Download gff for
BS14079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7787591..7787759 | 359..527 | 100 | | Plus |
2R | 7786498..7786539 | 17..59 | 97 | -> | Plus |
2R | 7787234..7787532 | 60..358 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:25 Download gff for
BS14079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3674003..3674044 | 17..59 | 97 | -> | Plus |
arm_2R | 3674739..3675037 | 60..358 | 100 | -> | Plus |
arm_2R | 3675096..3675264 | 359..527 | 100 | | Plus |
BS14079.3prime Sequence
524 bp (482 high quality bases) assembled on 2006-10-13
> BS14079.3prime
ATGGTCTAGAAAGCTTTTAGACATCGACTACCATCTTCTTGTGAATGTCC
GTGTTGCCGACCACAGAGCAGAACTCATCGAACGAGATCTTGCCATCCTC
ATCCTTATCCGCGAATCCGATCGTCTTGTCCACAATCTGCTGCAGTTGCG
TGTCCTTCAGATTATTGCCTACCATCATCTTTAAAACCTGAAACAGTTCG
CCATTGGAAATGTAACCATCGTTGTCCATGTCATAGATGCGAAAGGCGAA
GCGCAACTTGGACAGCTTGTCGCCCTTGACGCTGAACTGCGACACGCCCT
GGATGAACTCCTTGAAGTCCACCTCGCCGTTGCCGTCCGCGTCGAAAATG
TCGATCACGCGCTGCACCAGCGGATTCTGTTGCAGCTCCGGCAGCGACAT
GAACTCGTCCACGCTCAGCGCGCCCGAATTGTCCAGGTCCAGTTTCCGGA
AACGTTTGCCCAGCCGCCGGATCTCGTCGGCGTCGAAATTGGAACACATT
TTCCTGGGCAGTGATGTTTCATTT
BS14079.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:26:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11217-PA | 513 | CanB2-RA | 6..513 | 524..17 | 2490 | 99.6 | Minus |
CG4209-PA | 513 | CanB-RA | 31..251 | 499..279 | 380 | 86.8 | Minus |
CG4209-PA | 513 | CanB-RA | 418..509 | 112..21 | 185 | 88 | Minus |
CG4209-PA | 513 | CanB-RA | 349..407 | 181..123 | 170 | 91.5 | Minus |
CG4209-PA | 513 | CanB-RA | 256..320 | 274..210 | 150 | 89.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:03:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CanB2-RB | 2061 | CG11217-RB | 262..771 | 524..15 | 2520 | 99.6 | Minus |
CanB2-RA | 1143 | CG11217-RA | 262..771 | 524..15 | 2520 | 99.6 | Minus |
CanB-RB | 1148 | CG4209-RB | 122..612 | 511..21 | 1360 | 85.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:03:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7787234..7787533 | 486..187 | 1500 | 100 | Minus |
X | 23542271 | X | 5333423..5333913 | 511..21 | 1360 | 85.1 | Minus |
2R | 25286936 | 2R | 7787589..7787763 | 189..15 | 875 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 19:03:31 has no hits.
BS14079.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:32 Download gff for
BS14079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11217-PA | 6..513 | 17..524 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:09:22 Download gff for
BS14079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB2-RA | 262..771 | 15..524 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:58:41 Download gff for
BS14079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB2-RA | 262..771 | 15..524 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:58:41 Download gff for
BS14079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7786502..7786539 | 487..524 | 94 | -> | Minus |
2R | 7787234..7787532 | 188..486 | 100 | -> | Minus |
2R | 7787591..7787763 | 15..187 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:09:22 Download gff for
BS14079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3674007..3674044 | 487..524 | 94 | -> | Minus |
arm_2R | 3674739..3675037 | 188..486 | 100 | -> | Minus |
arm_2R | 3675096..3675268 | 15..187 | 100 | | Minus |
BS14079.5prime Sequence
543 bp (501 high quality bases) assembled on 2006-10-13
> BS14079.5prime
GAAGTTATCAGTCGACATGGGAAATGAAACATCACTGCCCATGGAAATGT
GTTCCAATTTCGACGCCGACGAGATCCGGCGGCTGGGCAAACGTTTCCGG
AAACTGGACCTGGACAATTCGGGCGCGCTGAGCGTGGACGAGTTCATGTC
GCTGCCGGAGCTGCAACAGAATCCGCTGGTGCAGCGCGTGATCGACATTT
TCGACGCGGACGGCAACGGCGAGGTGGACTTCAAGGAGTTCATCCAGGGC
GTGTCGCAGTTCAGCGTCAAGGGCGACAAGCTGTCCAAGTTGCGCTTCGC
CTTTCGCATCTATGACATGGACAACGATGGTTACATTTCCAATGGCGAAC
TGTTTCAGGTTTTAAAGATGATGGTAGGCAATAATCTGAAGGACACGCAA
CTGCAGCAGATTGTGGACAAGACGATCGGATTCGCGGATAAGGATGAGGA
TGGCAAGATCTCGTTCGATGAGTTCTGCTCTGTGGTCGGCAACACGGACA
TTCACAAGAAGATGGTAGTCGATGTCTAAAAGCTTTCTAGACC
BS14079.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:26:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11217-PA | 513 | CanB2-RA | 1..513 | 17..529 | 2565 | 100 | Plus |
CG4209-PA | 513 | CanB-RA | 19..251 | 35..267 | 415 | 87.1 | Plus |
CG4209-PA | 513 | CanB-RA | 418..509 | 434..525 | 185 | 88 | Plus |
CG4209-PA | 513 | CanB-RA | 349..407 | 365..423 | 170 | 91.5 | Plus |
CG4209-PA | 513 | CanB-RA | 256..320 | 272..336 | 150 | 89.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:13:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CanB2-RB | 2061 | CG11217-RB | 257..771 | 17..531 | 2575 | 100 | Plus |
CanB2-RA | 1143 | CG11217-RA | 257..771 | 17..531 | 2575 | 100 | Plus |
CanB-RB | 1148 | CG4209-RB | 103..612 | 16..525 | 1410 | 85.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:12:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7787234..7787533 | 60..359 | 1500 | 100 | Plus |
X | 23542271 | X | 5333404..5333913 | 16..525 | 1410 | 85.1 | Plus |
2R | 25286936 | 2R | 7787589..7787763 | 357..531 | 875 | 100 | Plus |
2R | 25286936 | 2R | 7786499..7786539 | 19..59 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:12:56 has no hits.
BS14079.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:32 Download gff for
BS14079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11217-PA | 1..513 | 17..529 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:47:44 Download gff for
BS14079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB2-RA | 257..771 | 17..531 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:06:03 Download gff for
BS14079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB2-RA | 257..771 | 17..531 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:06:03 Download gff for
BS14079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7787234..7787532 | 60..358 | 100 | -> | Plus |
2R | 7787591..7787763 | 359..531 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:47:44 Download gff for
BS14079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3674739..3675037 | 60..358 | 100 | -> | Plus |
arm_2R | 3675096..3675268 | 359..531 | 100 | | Plus |
BS14079.pep Sequence
Translation from 16 to 528
> BS14079.pep
MGNETSLPMEMCSNFDADEIRRLGKRFRKLDLDNSGALSVDEFMSLPELQ
QNPLVQRVIDIFDADGNGEVDFKEFIQGVSQFSVKGDKLSKLRFAFRIYD
MDNDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIGFADKDEDGKISF
DEFCSVVGNTDIHKKMVVDV*
BS14079.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:05:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CanB2-PB | 170 | CG11217-PB | 1..170 | 1..170 | 874 | 100 | Plus |
CanB2-PA | 170 | CG11217-PA | 1..170 | 1..170 | 874 | 100 | Plus |
CanB-PB | 170 | CG4209-PB | 1..170 | 1..170 | 858 | 97.6 | Plus |
CanB-PA | 170 | CG4209-PA | 1..170 | 1..170 | 858 | 97.6 | Plus |
elm-PB | 189 | CG2185-PB | 1..185 | 1..168 | 308 | 38.9 | Plus |