Clone Sequence Records
BS14080.3prime Sequence
588 bp (586 high quality bases) assembled on 2006-10-13
> BS14080.3prime
ATGGTCTAGAAAGCTTCTATTGTATGCTGGGCTTAATGGAGCCCATGGAG
TTTTTCCTATGATGATTGACCTCGAATCGCTTCATAATGCTGGCCACAAT
TGAGGAGGGCGGCATGTCCGGATTTCCGGTTAGACCCCTATAGCCCAGAA
CACTCGAATCGGCCAGGGATCGCGCCAGAGTCAGTCTTTGCACAAAGGCA
TCCGTATCGATGCCAGGCACTTGCGAGGGCTTCAGAAACCTCCGCGGTAT
CCGCGACAGCATATCCTCGGAGCTGAGCGGTCCAAAGCCCAGGTTGATGA
GTATGGCCTCGGGATCTGGCTTGCGTGCCTCCAGCAAGCTGTCCACGCTG
GAATATCGACTCGAGTCCGACTGCACGGATACGGAGCTGTCACGCAGGAG
CAGACTACTGAAGCGCTGTTGCCTCTGCGCCTGCGGACTCAGTTCGGGCG
CCGTGCTGGATGACTCAAAGGACTCCTCGTGGCGCAGGCAACGCGTACTG
GTGGCAGATATATGGCGCATGGGCATGGTGACGACGGGCGACATATGCTC
ATGTGCATCCGGATCGGCATTCTCCTCCAGATCGGCGG
BS14080.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14489-PA | 765 | olf186-M-RA | 194..765 | 588..17 | 2860 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:01:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| olf186-M-RA | 1746 | CG14489-RA | 927..1499 | 588..16 | 2865 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:01:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17847625..17848197 | 588..16 | 2865 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:01:32 has no hits.
BS14080.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:32 Download gff for
BS14080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14489-PA | 194..765 | 17..588 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:43 Download gff for
BS14080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| olf186-M-RA | 927..1501 | 13..588 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:33 Download gff for
BS14080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| olf186-M-RA | 927..1501 | 13..588 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:33 Download gff for
BS14080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17847625..17848199 | 13..588 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:43 Download gff for
BS14080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13735130..13735704 | 13..588 | 99 | | Minus |
BS14080.5prime Sequence
723 bp (607 high quality bases) assembled on 2006-10-13
> BS14080.5prime
GAAGTTATCAGTCGACATGGAACGTTCGCACAGCTGTAGCAATTTCGAGG
GCAGGACGGGAGCCAAGGTCATCGTTGGCGCAGTGGAGCAATTGGCCGGC
AGCAGTGAGCACCTGCCCAGCGTCCACTTTCCGCCCAGCAAGCCGCTGCG
CAGGCGCAGAAAATTGCAGCGACAGCAGAGTGCCGTCGATACGGATGACA
TGGAATATGCCGCCGATCTGGAGGAGAATGCCGATCCGGATGCACATGAG
CATATGTCGCCCGTCGTCACCATGCCCATGCGCCATATATCTGCCACCAG
TACGCGTTGCCTGCGCCACGAGGAGTCCTTTGAGTCATCCAGCACGGCGC
CCGAACTGAGTCCGCAGGCGCAGAGGCAACAGCGCTTCAGTAGTCTGCTC
CTGCGTGACAGCTCCGTATCCGTGCAGTCGGACTCGAGTCGATATTCCAG
CGTGGACAGCTTGCTGGAGGCACGCAAGCCAGATCCCGAGGCCATACTCA
TCAACCTGGGCTTTGGACCGCTCAGCTCCGAGGATATGCTGTCGCGGATA
CCGCGGAGGTTTCTGAAGCCCTCGCAAGTGCCTGGCATCGATACGGATGC
CTTTGTGCAAAGACTGACTCTGGCGCGATCCCTGGCCGATTCGAGTGTTC
TGGGCTATAGGGGTCTTACCGGAAATCCGGACATGCCGCCCTCCTCAATT
GTGGCCAGCATTATGAAGCGATT
BS14080.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:44:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14489-PA | 765 | olf186-M-RA | 1..707 | 17..723 | 3510 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:13:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| olf186-M-RA | 1746 | CG14489-RA | 733..1440 | 16..723 | 3525 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:13:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17847431..17848138 | 16..723 | 3525 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:13:02 has no hits.
BS14080.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:33 Download gff for
BS14080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14489-PA | 1..707 | 17..723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:03:48 Download gff for
BS14080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| olf186-M-RA | 721..1440 | 6..723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:26:09 Download gff for
BS14080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| olf186-M-RA | 721..1440 | 6..723 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:26:09 Download gff for
BS14080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17847419..17848138 | 6..723 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:03:48 Download gff for
BS14080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13734924..13735643 | 6..723 | 99 | | Plus |
BS14080.complete Sequence
797 bp assembled on 2006-11-01
GenBank Submission: FJ637597
> BS14080.complete
GAAGTTATCAGTCGACATGGAACGTTCGCACAGCTGTAGCAATTTCGAGG
GCAGGACGGGAGCCAAGGTCATCGTTGGCGCAGTGGAGCAATTGGCCGGC
AGCAGTGAGCACCTGCCCAGCGTCCACTTTCCGCCCAGCAAGCCGCTGCG
CAGGCGCAGAAAATTGCAGCGACAGCAGAGTGCCGTCGATACGGATGACA
TGGAATATGCCGCCGATCTGGAGGAGAATGCCGATCCGGATGCACATGAG
CATATGTCGCCCGTCGTCACCATGCCCATGCGCCATATATCTGCCACCAG
TACGCGTTGCCTGCGCCACGAGGAGTCCTTTGAGTCATCCAGCACGGCGC
CCGAACTGAGTCCGCAGGCGCAGAGGCAACAGCGCTTCAGTAGTCTGCTC
CTGCGTGACAGCTCCGTATCCGTGCAGTCGGACTCGAGTCGATATTCCAG
CGTGGACAGCTTGCTGGAGGCACGCAAGCCAGATCCCGAGGCCATACTCA
TCAACCTGGGCTTTGGACCGCTCAGCTCCGAGGATATGCTGTCGCGGATA
CCGCGGAGGTTTCTGAAGCCCTCGCAAGTGCCTGGCATCGATACGGATGC
CTTTGTGCAAAGACTGACTCTGGCGCGATCCCTGGCCGATTCGAGTGTTC
TGGGCTATAGGGGTCTAACCGGAAATCCGGACATGCCGCCCTCCTCAATT
GTGGCCAGCATTATGAAGCGATTCGAGGTCAATCATCATAGGAAAAACTC
CATGGGCTCCATTAAGCCCAGCATACAATAGAAGCTTTCTAGACCAT
BS14080.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:39:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| olf186-M-RA | 765 | CG14489-PA | 1..765 | 17..781 | 3825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:39:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| olf186-M-RA | 1746 | CG14489-RA | 733..1499 | 16..782 | 3835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:39:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17847431..17848197 | 16..782 | 3835 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:39:25 has no hits.
BS14080.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:05 Download gff for
BS14080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| olf186-M-RA | 1..765 | 17..781 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:21 Download gff for
BS14080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| olf186-M-RA | 719..1499 | 6..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:56 Download gff for
BS14080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| olf186-M-RA | 734..1498 | 17..781 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:05 Download gff for
BS14080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| olf186-M-RA | 719..1499 | 6..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:45 Download gff for
BS14080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| olf186-M-RA | 734..1498 | 17..781 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:45 Download gff for
BS14080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17847432..17848196 | 17..781 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:56 Download gff for
BS14080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13734937..13735701 | 17..781 | 100 | | Plus |
BS14080.pep Sequence
Translation from 16 to 780
> BS14080.pep
MERSHSCSNFEGRTGAKVIVGAVEQLAGSSEHLPSVHFPPSKPLRRRRKL
QRQQSAVDTDDMEYAADLEENADPDAHEHMSPVVTMPMRHISATSTRCLR
HEESFESSSTAPELSPQAQRQQRFSSLLLRDSSVSVQSDSSRYSSVDSLL
EARKPDPEAILINLGFGPLSSEDMLSRIPRRFLKPSQVPGIDTDAFVQRL
TLARSLADSSVLGYRGLTGNPDMPPSSIVASIMKRFEVNHHRKNSMGSIK
PSIQ*
BS14080.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| olf186-M-PA | 254 | CG14489-PA | 1..254 | 1..254 | 1285 | 100 | Plus |
