Clone BS14082 Report

Search the DGRC for BS14082

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:140
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptCG2010-RA
Protein status:BS14082.pep: full length peptide match
Sequenced Size:1580

Clone Sequence Records

BS14082.3prime Sequence

569 bp (567 high quality bases) assembled on 2006-10-13

> BS14082.3prime
ATGGTCTAGAAAGCTTTCAGTTGAAAATCAAATCGTTGTAGTTGCGGAGC
AGGTGATAGGGAGACACACGGCAGCAGGTGGTGGTGCGCACCACGGTGAT
GCGATCGGCACGCTCAAAGTTGGCCTTGACCGTCTCATAGTAGCGACCAT
CGCTGAGCACCATGCAGCGCAGCTTGAGGCACTTGACGCGCAGAATATCG
ATGGCCTTCTGGCTCTTGTCGGAGAAGCGCAGGTTGTCCGGATCCCAGCG
CAGCTCCAGCCGCTCCAAGTTGCCGCAATTCGAGGCGATGGTGTCCATCA
GCTGGTCCACGTGGATGTTGACGCCCAGCTTCTCTGCGGTGCCCATAACA
ATGATCTTGCAGTTGCCCAGCAGGGGCAGGATGCTCATCCACAGCTGGTC
GGTGATGTGGGGCATGCCCGAGAGACAGCAGGCGCTCAGCTGATGACCCT
GGCGCTGTATAAACTTAAGCAGGCCCTCATCCGAGATGTTGTCCGAGGAG
TCCAAGTCCAGGGAAATGAGCGACCTGGTGGTGCCCGATTCCATCCACTG
CTTGAGAACGCTGTCGTTG

BS14082.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:27:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG2010-PB 1536 CG2010-RB 984..1536 569..17 2765 100 Minus
CG2010-PA 1548 CG2010-RA 996..1548 569..17 2765 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:26:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG2010-RC 2132 CG2010-RC 1355..1907 569..17 2765 100 Minus
CG2010-RA 1910 CG2010-RA 1133..1685 569..17 2765 100 Minus
CG2010-RB 2255 CG2010-RB 1478..2030 569..17 2765 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:26:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29498294..29498503 362..153 1035 99.5 Minus
3R 32079331 3R 29498062..29498232 526..356 855 100 Minus
3R 32079331 3R 29498560..29498698 155..17 695 100 Minus
3R 32079331 3R 29497961..29498007 569..523 235 100 Minus
Blast to na_te.dros performed 2015-02-11 04:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
G5 4856 G5 G5_DM 4856bp 2601..2665 292..357 120 66.7 Plus

BS14082.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:34 Download gff for BS14082.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2010-PA 996..1548 17..569 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:08:45 Download gff for BS14082.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2010-RB 1478..2036 8..569 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:12:15 Download gff for BS14082.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2010-RB 1478..2036 8..569 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:12:15 Download gff for BS14082.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29497961..29498005 525..569 100 -> Minus
3R 29498064..29498231 357..524 100 -> Minus
3R 29498300..29498503 153..356 100 -> Minus
3R 29498563..29498704 8..152 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:08:45 Download gff for BS14082.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25323683..25323727 525..569 100 -> Minus
arm_3R 25323786..25323953 357..524 100 -> Minus
arm_3R 25324022..25324225 153..356 100 -> Minus
arm_3R 25324285..25324426 8..152 97   Minus

BS14082.5prime Sequence

722 bp (626 high quality bases) assembled on 2006-10-13

> BS14082.5prime
GAAGTTATCAGTCGACATGGATATATCCACCGATATCTGGGGTCAGCTGG
CCGTGGAGGCATCGCAGGTCTACCTCTCCGACGGCACAGTTCGCAGTCCC
TTCGCCGATACGACCATTGAGAAGCTGCCGGACAAGGTGCTGCTGCACAT
CTTCTCGTATCTGTCGCACCGCGAGATCTGCCGCCTGGCCAGGATTTGCC
GACGATGGCGGCAGATTGCATACGACACGCGGCTGTGGAAGAACGTGAGC
CTGCGACCGGAGGTCTCCGGACTGCACGTGGGCTCGCTGGAGATGCTGCT
GCAGCTGATCTCGGTGAGATTCGGACCGACTCTGCGCTACATCGAGCTGC
CCATCGAGCTGATCACGCACACGGTGCTCCACGAACTGTCCGCCAAGTGC
CCCAATTTGACCCACATGCTGCTGGACTTCTCCACAGCCATGCAGCTGCA
CGACTTCAGCGAGATGCAGGCCTTTCCCACCAAGCTGCGCTACATGTGCG
TCTGCCTCTCGGAGGTGATCTTCATGGAGGGCTTCATGCGCAAAATCTAC
AACTTCATCAACGGCCTGGAGGTGCTGCATCTAATTGGCACGTACGAGAA
GTGCGAGGAGGAGGAGGAGGAGATCTACGAAGTGATCAACGTGCACAAGC
TCAAGTCGGCCACGCCCAATTTGCGTGTGATCAACCTGTACGGAATCAAC
TTCATCGATGACTCGCACATCG

BS14082.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:27:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG2010-PA 1548 CG2010-RA 1..706 17..722 3480 99.7 Plus
CG2010-PB 1536 CG2010-RB 84..694 112..722 3005 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:42:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG2010-RA 1910 CG2010-RA 137..843 16..722 3505 99.7 Plus
CG2010-RC 2132 CG2010-RC 455..1065 112..722 3025 99.7 Plus
CG2010-RB 2255 CG2010-RB 578..1188 112..722 3025 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:42:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29496999..29497324 112..437 1630 100 Plus
3R 32079331 3R 29497385..29497671 436..722 1405 99.3 Plus
3R 32079331 3R 29496677..29496773 16..112 485 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:42:16 has no hits.

BS14082.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:34 Download gff for BS14082.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2010-PA 1..706 17..722 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:21:13 Download gff for BS14082.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2010-RA 133..843 9..722 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:13:38 Download gff for BS14082.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2010-RA 133..843 9..722 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:13:38 Download gff for BS14082.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29496673..29496773 9..112 97 -> Plus
3R 29497000..29497324 113..437 100 -> Plus
3R 29497387..29497671 438..722 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:21:13 Download gff for BS14082.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25322395..25322495 9..112 97 -> Plus
arm_3R 25322722..25323046 113..437 100 -> Plus
arm_3R 25323109..25323393 438..722 99   Plus

BS14082.complete Sequence

1580 bp assembled on 2008-08-15

GenBank Submission: KX805633

> BS14082.complete
GAAGTTATCAGTCGACATGGATATATCCACCGATATCTGGGGTCAGCTGG
CCGTGGAGGCATCGCAGGTCTACCTCTCCGACGGCACAGTTCGCAGTCCC
TTCGCCGATACGACCATTGAGAAGCTGCCGGACAAGGTGCTGCTGCACAT
CTTCTCGTATCTGTCGCACCGCGAGATCTGCCGCCTGGCCAGGATTTGCC
GACGATGGCGGCAGATTGCATACGACACGCGGCTGTGGAAGAACGTGAGC
CTGCGACCGGAGGTCTCCGGACTGCACGTGGGCTCGCTGGAGATGCTGCT
GCAGCTGATCTCGGTGAGATTCGGACCGACTCTGCGCTACATCGAGCTGC
CCATCGAGCTGATCACGCACACGGTGCTCCACGAACTGTCCGCCAAGTGC
CCCAATTTGACCCACATGCTGCTGGACTTCTCCACAGCCATGCAGCTGCA
CGACTTCAGCGAGATGCAGGCCTTTCCCACCAAGCTGCGCTACATGTGCG
TCTGCCTCTCGGAGGTGATCTTCATGGAGGGCTTCATGCGCAAAATCTAC
AACTTCATCAACGGCCTGGAGGTGCTGCATCTAATTGGCACGTACGAGAA
GTGCGAGGAGGAGGAGGAGGAGATCTACGAGGTGATCAACGTGCACAAGC
TCAAGTCGGCCACGCCCAATTTGCGTGTGATCAACCTGTACGGCATCAAC
TTCATCGATGACTCGCACATCGACGCCTTCAGCTCGAACTGCATCCAGCT
GGAGTGCCTGGCCGTCAACTTCTGCAACAAAGTGACCGGCTCCACCCTGA
AGACCCTGATCCAGCGTTCCAAGCGCCTCACCTGCCTGCTCATGAACGGC
ACCAGCCTGAAGTCGGAGTTCGTCATGCAGGCCGAGTGGGACAAGTGCGC
CCTGCAGGAGCTGGACATCACGGCCACCGATCTTTCGACCGAATGCCTCG
TGGACATGCTGAGCAGGATCCCCAGCCTCAAGTTCCTCTCAGCCGGCCAG
ATCAATGGCTTCAACGACAGCGTTCTCAAGCAGTGGATGGAATCGGGCAC
CACCAGGTCGCTCATTTCCCTGGACTTGGACTCCTCGGACAACATCTCGG
ATGAGGGCCTGCTTAAGTTTATACAGCGCCAGGGTCATCAGCTGAGCGCC
TGCTGTCTCTCGGGCATGCCCCACATCACCGACCAGCTGTGGATGAGCAT
CCTGCCCCTGCTGGGCAACTGCAAGATCATTGTTATGGGCACCGCAGAGA
AGCTGGGCGTCAACATCCACGTGGACCAGCTGATGGACACCATCGCCTCG
AATTGCGGCAACTTGGAGCGGCTGGAGCTGCGCTGGGATCCGGACAACCT
GCGCTTCTCCGACAAGAGCCAGAAGGCCATCGATATTCTGCGCGTCAAGT
GCCTCAAGCTGCGCTGCATGGTGCTCAGCGATGGTCGCTACTATGAGACG
GTCAAGGCCAACTTTGAGCGTGCCGATCGCATCACCGTGGTGCGCACCAC
CACCTGCTGCCGTGTGTCTCCCTATCACCTGCTCCGCAACTACAACGATT
TGATTTTCAACTGAAAGCTTTCTAGACCAT

BS14082.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:15:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG2010-RA 1548 CG2010-PA 1..1548 17..1564 7740 100 Plus
CG2010-RC 1536 CG2010-PC 84..1536 112..1564 7265 100 Plus
CG2010-RB 1536 CG2010-PB 84..1536 112..1564 7265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG2010-RA 1910 CG2010-RA 137..1685 16..1564 7745 100 Plus
CG2010-RC 2132 CG2010-RC 455..1907 112..1564 7265 100 Plus
CG2010-RB 2255 CG2010-RB 578..2030 112..1564 7265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29497385..29498007 436..1058 3115 100 Plus
3R 32079331 3R 29496999..29497324 112..437 1630 100 Plus
3R 32079331 3R 29498294..29498503 1219..1428 1035 99.5 Plus
3R 32079331 3R 29498062..29498232 1055..1225 855 100 Plus
3R 32079331 3R 29498560..29498698 1426..1564 695 100 Plus
3R 32079331 3R 29496677..29496773 16..112 485 100 Plus
Blast to na_te.dros performed 2014-11-28 01:15:48
Subject Length Description Subject Range Query Range Score Percent Strand
G5 4856 G5 G5_DM 4856bp 2601..2665 1289..1224 120 66.7 Minus

BS14082.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:30:27 Download gff for BS14082.complete
Subject Subject Range Query Range Percent Splice Strand
CG2010-RA 128..1686 9..1573 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:44:19 Download gff for BS14082.complete
Subject Subject Range Query Range Percent Splice Strand
CG2010-RA 138..1684 17..1563 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:22:23 Download gff for BS14082.complete
Subject Subject Range Query Range Percent Splice Strand
CG2010-RA 133..1679 17..1563 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:15 Download gff for BS14082.complete
Subject Subject Range Query Range Percent Splice Strand
CG2010-RA 138..1684 17..1563 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:15 Download gff for BS14082.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29496678..29496773 17..112 100 -> Plus
3R 29497000..29497324 113..437 100 -> Plus
3R 29497387..29498005 438..1056 100 -> Plus
3R 29498064..29498231 1057..1224 100 -> Plus
3R 29498300..29498503 1225..1428 100 -> Plus
3R 29498563..29498697 1429..1563 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:19 Download gff for BS14082.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25322400..25322495 17..112 100 -> Plus
arm_3R 25322722..25323046 113..437 100 -> Plus
arm_3R 25323109..25323727 438..1056 100 -> Plus
arm_3R 25323786..25323953 1057..1224 100 -> Plus
arm_3R 25324022..25324225 1225..1428 100 -> Plus
arm_3R 25324285..25324419 1429..1563 100   Plus

BS14082.pep Sequence

Translation from 16 to 1563

> BS14082.pep
MDISTDIWGQLAVEASQVYLSDGTVRSPFADTTIEKLPDKVLLHIFSYLS
HREICRLARICRRWRQIAYDTRLWKNVSLRPEVSGLHVGSLEMLLQLISV
RFGPTLRYIELPIELITHTVLHELSAKCPNLTHMLLDFSTAMQLHDFSEM
QAFPTKLRYMCVCLSEVIFMEGFMRKIYNFINGLEVLHLIGTYEKCEEEE
EEIYEVINVHKLKSATPNLRVINLYGINFIDDSHIDAFSSNCIQLECLAV
NFCNKVTGSTLKTLIQRSKRLTCLLMNGTSLKSEFVMQAEWDKCALQELD
ITATDLSTECLVDMLSRIPSLKFLSAGQINGFNDSVLKQWMESGTTRSLI
SLDLDSSDNISDEGLLKFIQRQGHQLSACCLSGMPHITDQLWMSILPLLG
NCKIIVMGTAEKLGVNIHVDQLMDTIASNCGNLERLELRWDPDNLRFSDK
SQKAIDILRVKCLKLRCMVLSDGRYYETVKANFERADRITVVRTTTCCRV
SPYHLLRNYNDLIFN*

BS14082.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG2010-PA 515 CG2010-PA 1..515 1..515 2685 100 Plus
CG2010-PC 511 CG2010-PC 2..511 6..515 2529 95.5 Plus
CG2010-PB 511 CG2010-PB 2..511 6..515 2529 95.5 Plus