Clone Sequence Records
BS14082.3prime Sequence
569 bp (567 high quality bases) assembled on 2006-10-13
> BS14082.3prime
ATGGTCTAGAAAGCTTTCAGTTGAAAATCAAATCGTTGTAGTTGCGGAGC
AGGTGATAGGGAGACACACGGCAGCAGGTGGTGGTGCGCACCACGGTGAT
GCGATCGGCACGCTCAAAGTTGGCCTTGACCGTCTCATAGTAGCGACCAT
CGCTGAGCACCATGCAGCGCAGCTTGAGGCACTTGACGCGCAGAATATCG
ATGGCCTTCTGGCTCTTGTCGGAGAAGCGCAGGTTGTCCGGATCCCAGCG
CAGCTCCAGCCGCTCCAAGTTGCCGCAATTCGAGGCGATGGTGTCCATCA
GCTGGTCCACGTGGATGTTGACGCCCAGCTTCTCTGCGGTGCCCATAACA
ATGATCTTGCAGTTGCCCAGCAGGGGCAGGATGCTCATCCACAGCTGGTC
GGTGATGTGGGGCATGCCCGAGAGACAGCAGGCGCTCAGCTGATGACCCT
GGCGCTGTATAAACTTAAGCAGGCCCTCATCCGAGATGTTGTCCGAGGAG
TCCAAGTCCAGGGAAATGAGCGACCTGGTGGTGCCCGATTCCATCCACTG
CTTGAGAACGCTGTCGTTG
BS14082.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:27:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2010-PB | 1536 | CG2010-RB | 984..1536 | 569..17 | 2765 | 100 | Minus |
CG2010-PA | 1548 | CG2010-RA | 996..1548 | 569..17 | 2765 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:26:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2010-RC | 2132 | CG2010-RC | 1355..1907 | 569..17 | 2765 | 100 | Minus |
CG2010-RA | 1910 | CG2010-RA | 1133..1685 | 569..17 | 2765 | 100 | Minus |
CG2010-RB | 2255 | CG2010-RB | 1478..2030 | 569..17 | 2765 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:26:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29498294..29498503 | 362..153 | 1035 | 99.5 | Minus |
3R | 32079331 | 3R | 29498062..29498232 | 526..356 | 855 | 100 | Minus |
3R | 32079331 | 3R | 29498560..29498698 | 155..17 | 695 | 100 | Minus |
3R | 32079331 | 3R | 29497961..29498007 | 569..523 | 235 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 04:26:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G5 | 4856 | G5 G5_DM 4856bp | 2601..2665 | 292..357 | 120 | 66.7 | Plus |
BS14082.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:34 Download gff for
BS14082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2010-PA | 996..1548 | 17..569 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:08:45 Download gff for
BS14082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2010-RB | 1478..2036 | 8..569 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:12:15 Download gff for
BS14082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2010-RB | 1478..2036 | 8..569 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:12:15 Download gff for
BS14082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29497961..29498005 | 525..569 | 100 | -> | Minus |
3R | 29498064..29498231 | 357..524 | 100 | -> | Minus |
3R | 29498300..29498503 | 153..356 | 100 | -> | Minus |
3R | 29498563..29498704 | 8..152 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:08:45 Download gff for
BS14082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25323683..25323727 | 525..569 | 100 | -> | Minus |
arm_3R | 25323786..25323953 | 357..524 | 100 | -> | Minus |
arm_3R | 25324022..25324225 | 153..356 | 100 | -> | Minus |
arm_3R | 25324285..25324426 | 8..152 | 97 | | Minus |
BS14082.5prime Sequence
722 bp (626 high quality bases) assembled on 2006-10-13
> BS14082.5prime
GAAGTTATCAGTCGACATGGATATATCCACCGATATCTGGGGTCAGCTGG
CCGTGGAGGCATCGCAGGTCTACCTCTCCGACGGCACAGTTCGCAGTCCC
TTCGCCGATACGACCATTGAGAAGCTGCCGGACAAGGTGCTGCTGCACAT
CTTCTCGTATCTGTCGCACCGCGAGATCTGCCGCCTGGCCAGGATTTGCC
GACGATGGCGGCAGATTGCATACGACACGCGGCTGTGGAAGAACGTGAGC
CTGCGACCGGAGGTCTCCGGACTGCACGTGGGCTCGCTGGAGATGCTGCT
GCAGCTGATCTCGGTGAGATTCGGACCGACTCTGCGCTACATCGAGCTGC
CCATCGAGCTGATCACGCACACGGTGCTCCACGAACTGTCCGCCAAGTGC
CCCAATTTGACCCACATGCTGCTGGACTTCTCCACAGCCATGCAGCTGCA
CGACTTCAGCGAGATGCAGGCCTTTCCCACCAAGCTGCGCTACATGTGCG
TCTGCCTCTCGGAGGTGATCTTCATGGAGGGCTTCATGCGCAAAATCTAC
AACTTCATCAACGGCCTGGAGGTGCTGCATCTAATTGGCACGTACGAGAA
GTGCGAGGAGGAGGAGGAGGAGATCTACGAAGTGATCAACGTGCACAAGC
TCAAGTCGGCCACGCCCAATTTGCGTGTGATCAACCTGTACGGAATCAAC
TTCATCGATGACTCGCACATCG
BS14082.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:27:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2010-PA | 1548 | CG2010-RA | 1..706 | 17..722 | 3480 | 99.7 | Plus |
CG2010-PB | 1536 | CG2010-RB | 84..694 | 112..722 | 3005 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:42:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2010-RA | 1910 | CG2010-RA | 137..843 | 16..722 | 3505 | 99.7 | Plus |
CG2010-RC | 2132 | CG2010-RC | 455..1065 | 112..722 | 3025 | 99.7 | Plus |
CG2010-RB | 2255 | CG2010-RB | 578..1188 | 112..722 | 3025 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:42:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29496999..29497324 | 112..437 | 1630 | 100 | Plus |
3R | 32079331 | 3R | 29497385..29497671 | 436..722 | 1405 | 99.3 | Plus |
3R | 32079331 | 3R | 29496677..29496773 | 16..112 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:42:16 has no hits.
BS14082.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:47:34 Download gff for
BS14082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2010-PA | 1..706 | 17..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:21:13 Download gff for
BS14082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2010-RA | 133..843 | 9..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:13:38 Download gff for
BS14082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2010-RA | 133..843 | 9..722 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:13:38 Download gff for
BS14082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29496673..29496773 | 9..112 | 97 | -> | Plus |
3R | 29497000..29497324 | 113..437 | 100 | -> | Plus |
3R | 29497387..29497671 | 438..722 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:21:13 Download gff for
BS14082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25322395..25322495 | 9..112 | 97 | -> | Plus |
arm_3R | 25322722..25323046 | 113..437 | 100 | -> | Plus |
arm_3R | 25323109..25323393 | 438..722 | 99 | | Plus |
BS14082.complete Sequence
1580 bp assembled on 2008-08-15
GenBank Submission: KX805633
> BS14082.complete
GAAGTTATCAGTCGACATGGATATATCCACCGATATCTGGGGTCAGCTGG
CCGTGGAGGCATCGCAGGTCTACCTCTCCGACGGCACAGTTCGCAGTCCC
TTCGCCGATACGACCATTGAGAAGCTGCCGGACAAGGTGCTGCTGCACAT
CTTCTCGTATCTGTCGCACCGCGAGATCTGCCGCCTGGCCAGGATTTGCC
GACGATGGCGGCAGATTGCATACGACACGCGGCTGTGGAAGAACGTGAGC
CTGCGACCGGAGGTCTCCGGACTGCACGTGGGCTCGCTGGAGATGCTGCT
GCAGCTGATCTCGGTGAGATTCGGACCGACTCTGCGCTACATCGAGCTGC
CCATCGAGCTGATCACGCACACGGTGCTCCACGAACTGTCCGCCAAGTGC
CCCAATTTGACCCACATGCTGCTGGACTTCTCCACAGCCATGCAGCTGCA
CGACTTCAGCGAGATGCAGGCCTTTCCCACCAAGCTGCGCTACATGTGCG
TCTGCCTCTCGGAGGTGATCTTCATGGAGGGCTTCATGCGCAAAATCTAC
AACTTCATCAACGGCCTGGAGGTGCTGCATCTAATTGGCACGTACGAGAA
GTGCGAGGAGGAGGAGGAGGAGATCTACGAGGTGATCAACGTGCACAAGC
TCAAGTCGGCCACGCCCAATTTGCGTGTGATCAACCTGTACGGCATCAAC
TTCATCGATGACTCGCACATCGACGCCTTCAGCTCGAACTGCATCCAGCT
GGAGTGCCTGGCCGTCAACTTCTGCAACAAAGTGACCGGCTCCACCCTGA
AGACCCTGATCCAGCGTTCCAAGCGCCTCACCTGCCTGCTCATGAACGGC
ACCAGCCTGAAGTCGGAGTTCGTCATGCAGGCCGAGTGGGACAAGTGCGC
CCTGCAGGAGCTGGACATCACGGCCACCGATCTTTCGACCGAATGCCTCG
TGGACATGCTGAGCAGGATCCCCAGCCTCAAGTTCCTCTCAGCCGGCCAG
ATCAATGGCTTCAACGACAGCGTTCTCAAGCAGTGGATGGAATCGGGCAC
CACCAGGTCGCTCATTTCCCTGGACTTGGACTCCTCGGACAACATCTCGG
ATGAGGGCCTGCTTAAGTTTATACAGCGCCAGGGTCATCAGCTGAGCGCC
TGCTGTCTCTCGGGCATGCCCCACATCACCGACCAGCTGTGGATGAGCAT
CCTGCCCCTGCTGGGCAACTGCAAGATCATTGTTATGGGCACCGCAGAGA
AGCTGGGCGTCAACATCCACGTGGACCAGCTGATGGACACCATCGCCTCG
AATTGCGGCAACTTGGAGCGGCTGGAGCTGCGCTGGGATCCGGACAACCT
GCGCTTCTCCGACAAGAGCCAGAAGGCCATCGATATTCTGCGCGTCAAGT
GCCTCAAGCTGCGCTGCATGGTGCTCAGCGATGGTCGCTACTATGAGACG
GTCAAGGCCAACTTTGAGCGTGCCGATCGCATCACCGTGGTGCGCACCAC
CACCTGCTGCCGTGTGTCTCCCTATCACCTGCTCCGCAACTACAACGATT
TGATTTTCAACTGAAAGCTTTCTAGACCAT
BS14082.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:15:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2010-RA | 1548 | CG2010-PA | 1..1548 | 17..1564 | 7740 | 100 | Plus |
CG2010-RC | 1536 | CG2010-PC | 84..1536 | 112..1564 | 7265 | 100 | Plus |
CG2010-RB | 1536 | CG2010-PB | 84..1536 | 112..1564 | 7265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2010-RA | 1910 | CG2010-RA | 137..1685 | 16..1564 | 7745 | 100 | Plus |
CG2010-RC | 2132 | CG2010-RC | 455..1907 | 112..1564 | 7265 | 100 | Plus |
CG2010-RB | 2255 | CG2010-RB | 578..2030 | 112..1564 | 7265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29497385..29498007 | 436..1058 | 3115 | 100 | Plus |
3R | 32079331 | 3R | 29496999..29497324 | 112..437 | 1630 | 100 | Plus |
3R | 32079331 | 3R | 29498294..29498503 | 1219..1428 | 1035 | 99.5 | Plus |
3R | 32079331 | 3R | 29498062..29498232 | 1055..1225 | 855 | 100 | Plus |
3R | 32079331 | 3R | 29498560..29498698 | 1426..1564 | 695 | 100 | Plus |
3R | 32079331 | 3R | 29496677..29496773 | 16..112 | 485 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:15:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G5 | 4856 | G5 G5_DM 4856bp | 2601..2665 | 1289..1224 | 120 | 66.7 | Minus |
BS14082.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:30:27 Download gff for
BS14082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2010-RA | 128..1686 | 9..1573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:44:19 Download gff for
BS14082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2010-RA | 138..1684 | 17..1563 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:22:23 Download gff for
BS14082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2010-RA | 133..1679 | 17..1563 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:15 Download gff for
BS14082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2010-RA | 138..1684 | 17..1563 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:15 Download gff for
BS14082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29496678..29496773 | 17..112 | 100 | -> | Plus |
3R | 29497000..29497324 | 113..437 | 100 | -> | Plus |
3R | 29497387..29498005 | 438..1056 | 100 | -> | Plus |
3R | 29498064..29498231 | 1057..1224 | 100 | -> | Plus |
3R | 29498300..29498503 | 1225..1428 | 100 | -> | Plus |
3R | 29498563..29498697 | 1429..1563 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:19 Download gff for
BS14082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25322400..25322495 | 17..112 | 100 | -> | Plus |
arm_3R | 25322722..25323046 | 113..437 | 100 | -> | Plus |
arm_3R | 25323109..25323727 | 438..1056 | 100 | -> | Plus |
arm_3R | 25323786..25323953 | 1057..1224 | 100 | -> | Plus |
arm_3R | 25324022..25324225 | 1225..1428 | 100 | -> | Plus |
arm_3R | 25324285..25324419 | 1429..1563 | 100 | | Plus |
BS14082.pep Sequence
Translation from 16 to 1563
> BS14082.pep
MDISTDIWGQLAVEASQVYLSDGTVRSPFADTTIEKLPDKVLLHIFSYLS
HREICRLARICRRWRQIAYDTRLWKNVSLRPEVSGLHVGSLEMLLQLISV
RFGPTLRYIELPIELITHTVLHELSAKCPNLTHMLLDFSTAMQLHDFSEM
QAFPTKLRYMCVCLSEVIFMEGFMRKIYNFINGLEVLHLIGTYEKCEEEE
EEIYEVINVHKLKSATPNLRVINLYGINFIDDSHIDAFSSNCIQLECLAV
NFCNKVTGSTLKTLIQRSKRLTCLLMNGTSLKSEFVMQAEWDKCALQELD
ITATDLSTECLVDMLSRIPSLKFLSAGQINGFNDSVLKQWMESGTTRSLI
SLDLDSSDNISDEGLLKFIQRQGHQLSACCLSGMPHITDQLWMSILPLLG
NCKIIVMGTAEKLGVNIHVDQLMDTIASNCGNLERLELRWDPDNLRFSDK
SQKAIDILRVKCLKLRCMVLSDGRYYETVKANFERADRITVVRTTTCCRV
SPYHLLRNYNDLIFN*
BS14082.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:42:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2010-PA | 515 | CG2010-PA | 1..515 | 1..515 | 2685 | 100 | Plus |
CG2010-PC | 511 | CG2010-PC | 2..511 | 6..515 | 2529 | 95.5 | Plus |
CG2010-PB | 511 | CG2010-PB | 2..511 | 6..515 | 2529 | 95.5 | Plus |